Wall clock time and date at job start Tue Mar 31 2020 00:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47251 * 2 1 4 4 N 1.46504 * 109.46991 * 180.02562 * 3 2 1 5 5 C 1.36937 * 119.99809 * 272.72723 * 4 3 2 6 6 H 1.07994 * 120.00093 * 146.19802 * 5 4 3 7 7 C 1.38816 * 119.99945 * 326.19337 * 5 4 3 8 8 N 1.31612 * 120.00313 * 337.94313 * 7 5 4 9 9 Si 1.86799 * 119.99602 * 157.93945 * 7 5 4 10 10 H 1.48498 * 109.47432 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47036 * 120.00435 * 9 7 5 12 12 H 1.48498 * 109.47201 * 239.99941 * 9 7 5 13 13 C 1.46501 * 120.00063 * 92.73057 * 4 3 2 14 14 C 1.50696 * 109.46805 * 269.99564 * 13 4 3 15 15 C 1.32574 * 120.00029 * 128.05298 * 14 13 4 16 16 C 1.47805 * 119.99790 * 9.23637 * 15 14 13 17 17 C 1.39544 * 120.12700 * 34.39640 * 16 15 14 18 18 C 1.37951 * 119.87276 * 180.02562 * 17 16 15 19 19 C 1.38468 * 120.12456 * 0.25824 * 18 17 16 20 20 Cl 1.73603 * 119.87020 * 179.72578 * 19 18 17 21 21 C 1.38465 * 120.26126 * 359.48363 * 19 18 17 22 22 C 1.37949 * 120.12292 * 0.51461 * 21 19 18 23 23 H 1.09006 * 109.47342 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47200 * 299.99693 * 1 2 3 25 25 H 1.08997 * 109.47217 * 59.99870 * 1 2 3 26 26 H 1.09002 * 109.47331 * 239.99533 * 2 1 3 27 27 H 1.09005 * 109.46966 * 119.99958 * 2 1 3 28 28 H 1.08995 * 109.47046 * 59.99823 * 3 2 1 29 29 H 1.08993 * 109.46791 * 299.99837 * 3 2 1 30 30 H 0.97004 * 120.00644 * 179.97438 * 8 7 5 31 31 H 1.08994 * 109.46887 * 149.99544 * 13 4 3 32 32 H 1.09000 * 109.46810 * 29.99674 * 13 4 3 33 33 H 1.08002 * 120.00552 * 308.05131 * 14 13 4 34 34 H 1.07996 * 120.00648 * 189.23494 * 15 14 13 35 35 H 1.07999 * 120.07059 * 0.04530 * 17 16 15 36 36 H 1.07996 * 119.93838 * 179.97438 * 18 17 16 37 37 H 1.07990 * 119.94025 * 180.23631 * 21 19 18 38 38 H 1.08008 * 120.06265 * 179.76229 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.3858 1.1837 6 1 5.1332 0.8623 1.2374 7 6 3.6726 2.0014 2.3151 8 7 2.7957 2.9751 2.1916 9 14 4.2206 1.4477 4.0129 10 1 5.2061 0.3450 3.8798 11 1 4.8483 2.5885 4.7269 12 1 3.0434 0.9701 4.7817 13 6 4.2370 1.5030 -1.2682 14 6 4.4879 0.1046 -1.7706 15 6 4.1486 -0.2257 -3.0089 16 6 3.7156 0.8193 -3.9602 17 6 4.2826 2.0933 -3.9070 18 6 3.8743 3.0648 -4.7971 19 6 2.8999 2.7794 -5.7386 20 17 2.3858 4.0092 -6.8510 21 6 2.3375 1.5156 -5.7997 22 6 2.7380 0.5361 -4.9147 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 2.4337 3.4051 2.9822 31 1 5.1894 2.0101 -1.1138 32 1 3.6476 2.0526 -2.0022 33 1 4.9443 -0.6285 -1.1220 34 1 4.1884 -1.2584 -3.3225 35 1 5.0399 2.3182 -3.1706 36 1 4.3121 4.0512 -4.7566 37 1 1.5807 1.2976 -6.5385 38 1 2.2959 -0.4482 -4.9608 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000254988600.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:01 Heat of formation + Delta-G solvation = 37.201915 kcal Electronic energy + Delta-G solvation = -19344.111516 eV Core-core repulsion = 16405.670962 eV Total energy + Delta-G solvation = -2938.440554 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.46148 -38.25383 -37.41202 -35.42290 -34.11258 -32.72080 -32.03928 -30.22684 -27.47880 -27.38179 -24.31496 -23.59414 -22.87464 -21.77765 -20.14041 -18.67305 -17.73351 -17.01743 -16.67548 -16.25282 -15.86522 -15.74263 -15.00088 -14.77262 -14.72833 -14.36054 -14.19790 -13.93382 -13.43277 -13.34686 -13.00954 -12.90796 -12.66743 -12.44668 -12.39514 -12.30859 -12.13714 -11.90992 -11.77693 -11.67919 -11.54407 -11.28996 -10.53227 -10.45088 -9.91567 -9.01321 -8.58786 -7.77697 -5.40119 -0.04787 0.38220 1.18038 1.44021 1.47532 1.51179 1.58167 2.52607 2.79673 3.25637 3.75552 3.87807 3.90956 3.97851 4.28639 4.33955 4.41111 4.48931 4.53169 4.59996 4.72559 4.75135 4.88476 4.89784 5.03416 5.13106 5.20288 5.21700 5.29126 5.32603 5.37789 5.49048 5.57299 5.68970 5.73551 5.85395 5.93728 6.01741 6.48663 7.18803 7.89591 8.39642 9.15778 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.021589 B = 0.004290 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.653152 B = 6525.987274 C = 6661.421773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.126 4.126 3 C 0.143 3.857 4 N -0.596 5.596 5 C -0.262 4.262 6 H 0.058 0.942 7 C -0.038 4.038 8 N -0.918 5.918 9 Si 0.954 3.046 10 H -0.268 1.268 11 H -0.292 1.292 12 H -0.290 1.290 13 C 0.155 3.845 14 C -0.131 4.131 15 C -0.142 4.142 16 C -0.049 4.049 17 C -0.110 4.110 18 C -0.120 4.120 19 C -0.049 4.049 20 Cl -0.075 7.075 21 C -0.113 4.113 22 C -0.101 4.101 23 H 0.064 0.936 24 H 0.040 0.960 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.033 0.967 28 H 0.069 0.931 29 H 0.017 0.983 30 H 0.251 0.749 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.138 0.862 35 H 0.132 0.868 36 H 0.140 0.860 37 H 0.152 0.848 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.200 -4.581 -15.778 16.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.165 4.165 3 C 0.018 3.982 4 N -0.316 5.316 5 C -0.392 4.392 6 H 0.076 0.924 7 C -0.235 4.235 8 N -0.563 5.563 9 Si 0.782 3.218 10 H -0.192 1.192 11 H -0.219 1.219 12 H -0.217 1.217 13 C 0.030 3.970 14 C -0.152 4.152 15 C -0.161 4.161 16 C -0.049 4.049 17 C -0.128 4.128 18 C -0.138 4.138 19 C -0.075 4.075 20 Cl -0.046 7.046 21 C -0.131 4.131 22 C -0.119 4.119 23 H 0.083 0.917 24 H 0.059 0.941 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.087 0.913 29 H 0.035 0.965 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.123 0.877 34 H 0.156 0.844 35 H 0.150 0.850 36 H 0.157 0.843 37 H 0.170 0.830 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -1.304 -4.335 -15.753 16.391 hybrid contribution 0.266 0.136 1.177 1.214 sum -1.037 -4.199 -14.576 15.205 Atomic orbital electron populations 1.21635 0.95232 1.01559 1.01141 1.21880 0.95617 0.99181 0.99851 1.20985 0.83078 0.94204 0.99964 1.44061 1.01470 1.85046 1.01019 1.19314 1.05413 1.26655 0.87863 0.92414 1.25706 1.00351 0.95777 1.01682 1.70083 1.34472 1.23036 1.28728 0.85428 0.77603 0.77862 0.80891 1.19237 1.21868 1.21712 1.20577 0.95710 0.92798 0.87892 1.24106 0.95612 0.99992 0.95493 1.21628 1.03278 0.98063 0.93098 1.19324 0.96196 0.93679 0.95709 1.21585 1.00711 0.92681 0.97862 1.21124 0.97290 1.00690 0.94738 1.21098 0.99860 0.91093 0.95456 1.98352 1.90165 1.54483 1.61579 1.21198 1.00610 0.90964 1.00326 1.21461 0.96151 1.00411 0.93899 0.91682 0.94077 0.92555 0.93046 0.94829 0.91295 0.96453 0.94007 0.93803 0.91948 0.87748 0.84422 0.85018 0.84263 0.82986 0.82906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.56 9.91 71.98 0.71 -3.84 16 2 C -0.13 -5.05 6.25 30.59 0.19 -4.86 16 3 C 0.14 6.83 5.35 86.38 0.46 7.29 16 4 N -0.60 -29.24 2.44 -706.36 -1.72 -30.96 16 5 C -0.26 -14.14 9.49 84.03 0.80 -13.35 16 6 H 0.06 3.09 7.92 -2.91 -0.02 3.07 16 7 C -0.04 -2.11 5.00 84.86 0.42 -1.69 16 8 N -0.92 -53.45 11.21 21.65 0.24 -53.21 16 9 Si 0.95 44.33 29.61 68.60 2.03 46.36 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 12 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 13 C 0.15 6.29 4.37 85.63 0.37 6.67 16 14 C -0.13 -4.44 9.38 24.53 0.23 -4.21 16 15 C -0.14 -3.92 9.81 23.65 0.23 -3.68 16 16 C -0.05 -1.32 5.24 -20.12 -0.11 -1.42 16 17 C -0.11 -3.09 7.31 22.52 0.16 -2.93 16 18 C -0.12 -3.10 9.81 22.26 0.22 -2.89 16 19 C -0.05 -1.18 6.32 22.38 0.14 -1.03 16 20 Cl -0.07 -1.64 28.95 -2.72 -0.08 -1.72 16 21 C -0.11 -2.45 9.81 22.26 0.22 -2.23 16 22 C -0.10 -2.29 9.78 22.52 0.22 -2.07 16 23 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 24 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.05 1.94 7.74 -2.39 -0.02 1.92 16 27 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 28 H 0.07 3.80 5.25 -2.39 -0.01 3.78 16 29 H 0.02 0.80 7.86 -2.39 -0.02 0.78 16 30 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 31 H 0.04 1.84 7.77 -2.39 -0.02 1.82 16 32 H 0.06 2.47 4.52 -2.39 -0.01 2.46 16 33 H 0.10 3.62 8.06 -2.91 -0.02 3.60 16 34 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 35 H 0.13 3.83 5.98 -2.91 -0.02 3.81 16 36 H 0.14 3.25 8.06 -2.91 -0.02 3.22 16 37 H 0.15 2.54 8.06 -2.92 -0.02 2.52 16 38 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -60.06 329.58 5.79 -54.27 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 1.04 Total: 15.52 kcal Atomic # 6 Polarization: -34.54 SS G_CDS: 4.28 Total: -30.25 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -1.48 Total: -84.17 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 17 Polarization: -1.64 SS G_CDS: -0.08 Total: -1.72 kcal Total: -60.06 5.79 -54.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254988600.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.472 kcal (2) G-P(sol) polarization free energy of solvation -60.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds