Wall clock time and date at job start Tue Mar 31 2020 01:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46886 * 2 1 4 4 C 1.50705 * 109.46867 * 240.01170 * 2 1 3 5 5 H 1.08004 * 119.99159 * 239.99715 * 4 2 1 6 6 C 1.37867 * 120.00658 * 59.99364 * 4 2 1 7 7 N 1.31520 * 120.00078 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00479 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47224 * 89.99940 * 8 6 4 10 10 H 1.48499 * 109.47651 * 210.00558 * 8 6 4 11 11 H 1.48509 * 109.46869 * 330.00124 * 8 6 4 12 12 N 1.46895 * 109.47545 * 120.00717 * 2 1 3 13 13 C 1.46895 * 111.00248 * 176.04586 * 12 2 1 14 14 C 1.46904 * 110.99752 * 300.00160 * 12 2 1 15 15 C 1.50701 * 109.46995 * 170.00168 * 14 12 2 16 16 C 1.32576 * 120.00169 * 127.27316 * 15 14 12 17 17 C 1.47804 * 119.99644 * 8.05010 * 16 15 14 18 18 C 1.39541 * 120.12464 * 217.90766 * 17 16 15 19 19 C 1.37954 * 119.86905 * 179.76853 * 18 17 16 20 20 C 1.38462 * 120.12430 * 0.52286 * 19 18 17 21 21 Cl 1.73598 * 119.86958 * 179.76448 * 20 19 18 22 22 C 1.38466 * 120.26267 * 359.73190 * 20 19 18 23 23 C 1.37943 * 120.12538 * 0.02562 * 22 20 19 24 24 H 1.08999 * 109.46986 * 299.99274 * 1 2 3 25 25 H 1.09004 * 109.47345 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47377 * 59.99317 * 1 2 3 27 27 H 0.97000 * 120.00306 * 179.97438 * 7 6 4 28 28 H 1.09007 * 109.47343 * 59.99696 * 13 12 2 29 29 H 1.09005 * 109.47470 * 179.97438 * 13 12 2 30 30 H 1.08999 * 109.47153 * 300.00125 * 13 12 2 31 31 H 1.09009 * 109.46790 * 289.99572 * 14 12 2 32 32 H 1.08995 * 109.47553 * 49.99493 * 14 12 2 33 33 H 1.07999 * 119.99893 * 307.26708 * 15 14 12 34 34 H 1.07995 * 119.99726 * 188.05292 * 16 15 14 35 35 H 1.07997 * 120.06855 * 0.02562 * 18 17 16 36 36 H 1.07994 * 119.93932 * 180.23540 * 19 18 17 37 37 H 1.07998 * 119.93665 * 179.97438 * 22 20 19 38 38 H 1.08000 * 120.06303 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2307 5 1 2.6532 -1.5883 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9433 0.8305 -2.6034 8 14 2.3211 -1.1198 -4.0082 9 1 1.3426 -2.1612 -4.4121 10 1 2.4864 -0.1408 -5.1124 11 1 3.6292 -1.7578 -3.7125 12 7 2.0197 -0.6926 1.1993 13 6 3.4851 -0.7946 1.1868 14 6 1.5487 -0.0266 2.4210 15 6 1.8581 -0.8915 3.6157 16 6 2.5181 -0.3847 4.6479 17 6 2.7945 1.0660 4.7080 18 6 4.0109 1.5268 5.2130 19 6 4.2653 2.8818 5.2622 20 6 3.3120 3.7843 4.8218 21 17 3.6366 5.4882 4.8925 22 6 2.1010 3.3331 4.3246 23 6 1.8375 1.9803 4.2659 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8899 27 1 0.7093 1.1622 -3.4843 28 1 3.9187 0.2051 1.1590 29 1 3.8211 -1.3111 2.0860 30 1 3.8029 -1.3531 0.3064 31 1 2.0520 0.9344 2.5280 32 1 0.4723 0.1322 2.3564 33 1 1.5422 -1.9241 3.6312 34 1 2.8537 -1.0319 5.4446 35 1 4.7535 0.8240 5.5608 36 1 5.2079 3.2396 5.6493 37 1 1.3611 4.0417 3.9829 38 1 0.8928 1.6295 3.8775 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255372505.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:00 Heat of formation + Delta-G solvation = 44.014420 kcal Electronic energy + Delta-G solvation = -19226.237434 eV Core-core repulsion = 16288.092293 eV Total energy + Delta-G solvation = -2938.145142 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -39.57336 -37.34732 -36.47911 -34.31938 -32.48172 -31.20510 -29.68852 -28.90199 -26.93844 -24.71456 -23.56483 -22.73009 -22.11003 -19.53171 -19.05165 -16.85731 -16.24327 -15.82341 -15.46653 -15.08203 -14.64170 -14.12013 -13.83202 -13.60168 -13.34725 -13.16681 -12.98296 -12.40406 -12.06677 -11.88071 -11.62688 -11.44740 -11.15243 -11.05485 -10.88508 -10.80955 -10.68206 -10.62309 -10.12790 -10.05165 -9.81727 -9.52508 -9.07359 -8.84661 -8.43759 -8.10569 -7.14012 -6.01489 -4.06030 0.88561 1.27007 2.08485 2.41734 3.30674 3.37048 3.40120 3.68292 4.40982 4.73453 4.80283 4.82283 5.03039 5.25734 5.27972 5.33385 5.41001 5.58980 5.76154 5.86763 6.02055 6.11671 6.17014 6.19265 6.27374 6.39153 6.47777 6.65688 6.73128 6.79552 6.83459 6.91703 7.03090 7.15086 7.50511 7.71842 7.82433 8.19030 8.31334 8.59119 9.00317 9.59064 11.05371 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019708 B = 0.004168 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.389747 B = 6716.987661 C = 7387.281604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.212 3.788 3 H -0.002 1.002 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.534 5.534 13 C 0.041 3.959 14 C 0.055 3.945 15 C -0.093 4.093 16 C -0.161 4.161 17 C -0.036 4.036 18 C -0.104 4.104 19 C -0.113 4.113 20 C -0.040 4.040 21 Cl -0.080 7.080 22 C -0.110 4.110 23 C -0.095 4.095 24 H 0.007 0.993 25 H 0.035 0.965 26 H 0.085 0.915 27 H 0.260 0.740 28 H 0.009 0.991 29 H 0.042 0.958 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.084 0.916 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.607 3.234 16.388 17.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.106 3.894 3 H 0.015 0.985 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.259 5.259 13 C -0.107 4.107 14 C -0.072 4.072 15 C -0.112 4.112 16 C -0.179 4.179 17 C -0.036 4.036 18 C -0.122 4.122 19 C -0.131 4.131 20 C -0.066 4.066 21 Cl -0.051 7.051 22 C -0.129 4.129 23 C -0.113 4.113 24 H 0.026 0.974 25 H 0.054 0.946 26 H 0.104 0.896 27 H 0.070 0.930 28 H 0.028 0.972 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.362 3.040 16.215 16.837 hybrid contribution 0.688 0.537 -0.907 1.259 sum 4.050 3.578 15.308 16.234 Atomic orbital electron populations 1.21867 0.97784 0.99664 0.99836 1.19246 0.92254 0.92015 0.85841 0.98474 1.21150 1.31036 1.12266 0.89733 0.91863 1.24927 0.95224 0.95063 0.99014 1.69890 1.36992 1.22981 1.23414 0.86523 0.79219 0.79295 0.82508 1.20659 1.21339 1.19946 1.62101 1.09350 1.52655 1.01748 1.22171 0.88684 0.98979 1.00911 1.21728 1.01162 0.94760 0.89551 1.23542 0.93791 1.00434 0.93404 1.21525 1.03469 0.92299 1.00640 1.19181 0.93606 0.93872 0.96957 1.21193 0.96656 0.94583 0.99760 1.20926 0.98815 0.92622 1.00779 1.20950 0.96553 0.84520 1.04595 1.98357 1.95590 1.13959 1.97168 1.21005 0.95885 0.96234 0.99754 1.21463 1.00008 0.91802 0.98043 0.97372 0.94628 0.89602 0.92989 0.97202 0.93906 0.90741 0.93851 0.89796 0.86178 0.86194 0.85145 0.85192 0.84908 0.84532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 8.76 37.16 0.33 -2.89 16 2 C 0.21 5.33 2.06 -68.87 -0.14 5.19 16 3 H 0.00 -0.07 8.14 -51.93 -0.42 -0.49 16 4 C -0.50 -13.73 7.93 -34.44 -0.27 -14.00 16 5 H 0.06 1.72 6.39 -52.48 -0.34 1.38 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -25.41 11.32 55.43 0.63 -24.79 16 8 Si 0.90 21.29 29.54 -169.99 -5.02 16.26 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.53 -11.35 4.61 -237.73 -1.10 -12.44 16 13 C 0.04 0.82 9.07 60.06 0.54 1.37 16 14 C 0.06 0.97 3.53 -4.97 -0.02 0.95 16 15 C -0.09 -1.33 8.50 -36.21 -0.31 -1.64 16 16 C -0.16 -2.00 9.79 -37.58 -0.37 -2.37 16 17 C -0.04 -0.47 5.15 -105.01 -0.54 -1.01 16 18 C -0.10 -1.21 9.78 -39.20 -0.38 -1.59 16 19 C -0.11 -1.30 9.81 -39.60 -0.39 -1.69 16 20 C -0.04 -0.50 6.32 -39.41 -0.25 -0.75 16 21 Cl -0.08 -0.93 28.95 -51.86 -1.50 -2.43 16 22 C -0.11 -1.42 9.81 -39.61 -0.39 -1.81 16 23 C -0.10 -1.26 7.32 -39.20 -0.29 -1.55 16 24 H 0.01 0.16 6.20 -51.93 -0.32 -0.16 16 25 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.09 2.27 6.07 -51.93 -0.32 1.96 16 27 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.04 0.74 7.17 -51.93 -0.37 0.37 16 30 H 0.07 1.58 6.23 -51.93 -0.32 1.26 16 31 H 0.04 0.78 4.81 -51.92 -0.25 0.53 16 32 H 0.08 1.48 5.68 -51.93 -0.29 1.18 16 33 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 38 H 0.14 1.77 6.35 -52.49 -0.33 1.44 16 LS Contribution 320.80 15.07 4.83 4.83 Total: -1.00 -28.52 320.80 -9.79 -38.31 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -5.06 Total: 0.51 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -2.57 Total: -20.25 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: -0.47 Total: -37.23 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.50 Total: -2.43 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.52 -9.79 -38.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255372505.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.322 kcal (2) G-P(sol) polarization free energy of solvation -28.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds