Wall clock time and date at job start Tue Mar 31 2020 01:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46886 * 2 1 4 4 C 1.50705 * 109.46867 * 240.01170 * 2 1 3 5 5 H 1.08004 * 119.99159 * 239.99715 * 4 2 1 6 6 C 1.37867 * 120.00658 * 59.99364 * 4 2 1 7 7 N 1.31520 * 120.00078 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00479 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47224 * 89.99940 * 8 6 4 10 10 H 1.48499 * 109.47651 * 210.00558 * 8 6 4 11 11 H 1.48509 * 109.46869 * 330.00124 * 8 6 4 12 12 N 1.46895 * 109.47545 * 120.00717 * 2 1 3 13 13 C 1.46895 * 111.00248 * 176.04586 * 12 2 1 14 14 C 1.46904 * 110.99752 * 300.00160 * 12 2 1 15 15 C 1.50701 * 109.46995 * 170.00168 * 14 12 2 16 16 C 1.32576 * 120.00169 * 127.27316 * 15 14 12 17 17 C 1.47804 * 119.99644 * 8.05010 * 16 15 14 18 18 C 1.39541 * 120.12464 * 217.90766 * 17 16 15 19 19 C 1.37954 * 119.86905 * 179.76853 * 18 17 16 20 20 C 1.38462 * 120.12430 * 0.52286 * 19 18 17 21 21 Cl 1.73598 * 119.86958 * 179.76448 * 20 19 18 22 22 C 1.38466 * 120.26267 * 359.73190 * 20 19 18 23 23 C 1.37943 * 120.12538 * 0.02562 * 22 20 19 24 24 H 1.08999 * 109.46986 * 299.99274 * 1 2 3 25 25 H 1.09004 * 109.47345 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47377 * 59.99317 * 1 2 3 27 27 H 0.97000 * 120.00306 * 179.97438 * 7 6 4 28 28 H 1.09007 * 109.47343 * 59.99696 * 13 12 2 29 29 H 1.09005 * 109.47470 * 179.97438 * 13 12 2 30 30 H 1.08999 * 109.47153 * 300.00125 * 13 12 2 31 31 H 1.09009 * 109.46790 * 289.99572 * 14 12 2 32 32 H 1.08995 * 109.47553 * 49.99493 * 14 12 2 33 33 H 1.07999 * 119.99893 * 307.26708 * 15 14 12 34 34 H 1.07995 * 119.99726 * 188.05292 * 16 15 14 35 35 H 1.07997 * 120.06855 * 0.02562 * 18 17 16 36 36 H 1.07994 * 119.93932 * 180.23540 * 19 18 17 37 37 H 1.07998 * 119.93665 * 179.97438 * 22 20 19 38 38 H 1.08000 * 120.06303 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2307 5 1 2.6532 -1.5883 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9433 0.8305 -2.6034 8 14 2.3211 -1.1198 -4.0082 9 1 1.3426 -2.1612 -4.4121 10 1 2.4864 -0.1408 -5.1124 11 1 3.6292 -1.7578 -3.7125 12 7 2.0197 -0.6926 1.1993 13 6 3.4851 -0.7946 1.1868 14 6 1.5487 -0.0266 2.4210 15 6 1.8581 -0.8915 3.6157 16 6 2.5181 -0.3847 4.6479 17 6 2.7945 1.0660 4.7080 18 6 4.0109 1.5268 5.2130 19 6 4.2653 2.8818 5.2622 20 6 3.3120 3.7843 4.8218 21 17 3.6366 5.4882 4.8925 22 6 2.1010 3.3331 4.3246 23 6 1.8375 1.9803 4.2659 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8899 27 1 0.7093 1.1622 -3.4843 28 1 3.9187 0.2051 1.1590 29 1 3.8211 -1.3111 2.0860 30 1 3.8029 -1.3531 0.3064 31 1 2.0520 0.9344 2.5280 32 1 0.4723 0.1322 2.3564 33 1 1.5422 -1.9241 3.6312 34 1 2.8537 -1.0319 5.4446 35 1 4.7535 0.8240 5.5608 36 1 5.2079 3.2396 5.6493 37 1 1.3611 4.0417 3.9829 38 1 0.8928 1.6295 3.8775 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255372505.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:00 Heat of formation + Delta-G solvation = 29.339855 kcal Electronic energy + Delta-G solvation = -19226.873771 eV Core-core repulsion = 16288.092293 eV Total energy + Delta-G solvation = -2938.781478 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.58105 -38.85768 -37.51461 -35.69988 -34.27250 -32.16026 -31.23039 -30.35683 -28.45632 -26.60472 -25.09040 -23.69952 -23.34440 -21.30240 -20.14668 -18.37771 -17.74832 -17.13918 -16.85452 -16.30837 -16.02509 -15.72813 -15.18085 -14.84759 -14.55089 -14.42049 -14.29289 -13.96692 -13.60188 -13.25279 -12.98171 -12.87978 -12.65233 -12.58808 -12.41213 -12.37450 -12.08131 -11.96450 -11.89950 -11.78180 -11.56732 -10.95942 -10.56424 -10.43551 -10.01764 -9.19445 -8.81604 -8.10874 -6.22930 -0.10672 0.32458 1.13352 1.38132 1.42756 1.43410 1.53419 2.42847 2.71633 3.17351 3.46576 3.81813 3.84036 3.91945 4.18643 4.30151 4.40282 4.47519 4.58693 4.62006 4.70243 4.74522 4.92366 4.95684 5.01995 5.07372 5.10999 5.15391 5.24057 5.26287 5.40892 5.50840 5.63806 5.72939 5.73513 5.80477 5.94260 6.26686 6.39895 6.75512 6.92054 7.46465 8.95010 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019708 B = 0.004168 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.389747 B = 6716.987661 C = 7387.281604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.217 3.783 3 H -0.043 1.043 4 C -0.520 4.520 5 H 0.060 0.940 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.959 3.041 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.268 1.268 12 N -0.539 5.539 13 C 0.048 3.952 14 C 0.060 3.940 15 C -0.115 4.115 16 C -0.130 4.130 17 C -0.056 4.056 18 C -0.099 4.099 19 C -0.115 4.115 20 C -0.049 4.049 21 Cl -0.076 7.076 22 C -0.125 4.125 23 C -0.108 4.108 24 H 0.031 0.969 25 H 0.033 0.967 26 H 0.059 0.941 27 H 0.261 0.739 28 H -0.004 1.004 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.037 0.963 32 H 0.076 0.924 33 H 0.131 0.869 34 H 0.153 0.847 35 H 0.159 0.841 36 H 0.152 0.848 37 H 0.136 0.864 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.834 2.191 17.801 18.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.110 3.890 3 H -0.025 1.025 4 C -0.558 4.558 5 H 0.078 0.922 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.193 1.193 12 N -0.263 5.263 13 C -0.100 4.100 14 C -0.067 4.067 15 C -0.134 4.134 16 C -0.148 4.148 17 C -0.056 4.056 18 C -0.117 4.117 19 C -0.133 4.133 20 C -0.076 4.076 21 Cl -0.047 7.047 22 C -0.143 4.143 23 C -0.126 4.126 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.015 0.985 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.149 0.851 34 H 0.170 0.830 35 H 0.176 0.824 36 H 0.170 0.830 37 H 0.154 0.846 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.590 1.992 17.650 18.345 hybrid contribution 0.340 0.964 -1.235 1.603 sum 4.930 2.956 16.415 17.392 Atomic orbital electron populations 1.21674 0.97215 0.99353 0.99718 1.19028 0.92688 0.89930 0.87339 1.02535 1.21449 1.31104 1.12290 0.90946 0.92152 1.25716 0.95391 0.95741 1.01932 1.70025 1.37887 1.24187 1.24016 0.85532 0.78909 0.78224 0.78827 1.20027 1.21085 1.19252 1.62037 1.10058 1.52401 1.01817 1.22109 0.87942 0.98272 1.01667 1.21697 1.00527 0.95109 0.89322 1.23293 0.96582 1.00558 0.92942 1.21801 1.00625 0.92186 1.00215 1.19408 0.94293 0.94219 0.97702 1.21517 0.96535 0.95113 0.98568 1.21242 0.99360 0.92609 1.00123 1.21140 0.96728 0.85059 1.04643 1.98357 1.95524 1.13653 1.97139 1.21141 0.96511 0.96397 1.00285 1.21539 1.00322 0.92259 0.98503 0.94983 0.94804 0.92243 0.92983 0.98530 0.90654 0.92454 0.94470 0.90565 0.85130 0.82988 0.82381 0.83009 0.84564 0.85023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.97 8.76 71.98 0.63 -5.34 16 2 C 0.22 11.18 2.06 44.17 0.09 11.27 16 3 H -0.04 -2.50 8.14 -2.39 -0.02 -2.52 16 4 C -0.52 -28.78 7.93 25.60 0.20 -28.58 16 5 H 0.06 3.31 6.39 -2.91 -0.02 3.29 16 6 C 0.01 0.59 5.30 84.65 0.45 1.04 16 7 N -0.92 -53.52 11.32 21.44 0.24 -53.28 16 8 Si 0.96 43.85 29.54 68.60 2.03 45.88 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 10 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 12 N -0.54 -22.89 4.61 -906.03 -4.18 -27.07 16 13 C 0.05 1.92 9.07 127.69 1.16 3.08 16 14 C 0.06 2.09 3.53 85.56 0.30 2.39 16 15 C -0.12 -3.04 8.50 24.53 0.21 -2.84 16 16 C -0.13 -2.82 9.79 23.65 0.23 -2.59 16 17 C -0.06 -1.33 5.15 -20.12 -0.10 -1.44 16 18 C -0.10 -2.02 9.78 22.52 0.22 -1.80 16 19 C -0.11 -2.39 9.81 22.26 0.22 -2.17 16 20 C -0.05 -1.18 6.32 22.38 0.14 -1.04 16 21 Cl -0.08 -1.69 28.95 -2.72 -0.08 -1.77 16 22 C -0.12 -3.18 9.81 22.25 0.22 -2.96 16 23 C -0.11 -2.82 7.32 22.51 0.16 -2.65 16 24 H 0.03 1.37 6.20 -2.39 -0.01 1.35 16 25 H 0.03 1.62 8.14 -2.38 -0.02 1.60 16 26 H 0.06 3.23 6.07 -2.39 -0.01 3.22 16 27 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 28 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 29 H 0.07 2.46 7.17 -2.38 -0.02 2.44 16 30 H 0.06 2.43 6.23 -2.39 -0.01 2.42 16 31 H 0.04 1.35 4.81 -2.38 -0.01 1.34 16 32 H 0.08 2.69 5.68 -2.39 -0.01 2.68 16 33 H 0.13 3.20 8.06 -2.91 -0.02 3.17 16 34 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 35 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 36 H 0.15 2.44 8.06 -2.91 -0.02 2.41 16 37 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 38 H 0.13 3.45 6.35 -2.91 -0.02 3.43 16 Total: -1.00 -61.76 320.80 3.20 -58.57 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 1.05 Total: 11.31 kcal Atomic # 6 Polarization: -37.76 SS G_CDS: 4.13 Total: -33.63 kcal Atomic # 7 Polarization: -76.41 SS G_CDS: -3.94 Total: -80.35 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -0.08 Total: -1.77 kcal Total: -61.76 3.20 -58.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255372505.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.907 kcal (2) G-P(sol) polarization free energy of solvation -61.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds