Wall clock time and date at job start Tue Mar 31 2020 00:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31782 * 122.74843 * 2 1 4 4 C 1.29029 * 117.12531 * 179.72671 * 3 2 1 5 5 S 1.70974 * 110.16604 * 359.97438 * 4 3 2 6 6 C 1.33644 * 122.74982 * 179.69804 * 2 1 3 7 7 C 1.50699 * 126.03839 * 0.25795 * 6 2 1 8 8 C 1.52999 * 109.47208 * 89.99712 * 7 6 2 9 9 N 1.46902 * 109.47258 * 180.02562 * 8 7 6 10 10 C 1.46898 * 111.00002 * 169.99783 * 9 8 7 11 11 C 1.50697 * 109.47451 * 284.31350 * 10 9 8 12 12 H 1.08006 * 120.00068 * 4.65328 * 11 10 9 13 13 C 1.37878 * 120.00301 * 184.65987 * 11 10 9 14 14 N 1.31510 * 119.99866 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00116 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47283 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47545 * 119.99772 * 15 13 11 18 18 H 1.48506 * 109.47183 * 240.00137 * 15 13 11 19 19 C 1.46894 * 110.99896 * 293.95227 * 9 8 7 20 20 C 1.52993 * 109.47342 * 164.04914 * 19 9 8 21 21 C 1.47199 * 109.47615 * 179.53988 * 20 19 9 22 22 N 8.45508 * 100.04904 * 176.78161 * 2 1 3 23 23 H 1.09007 * 109.46897 * 90.03170 * 1 2 3 24 24 H 1.09002 * 109.47018 * 210.02290 * 1 2 3 25 25 H 1.08991 * 109.47348 * 330.02542 * 1 2 3 26 26 H 1.07993 * 124.91441 * 180.02562 * 4 3 2 27 27 H 1.08998 * 109.47274 * 209.99390 * 7 6 2 28 28 H 1.09001 * 109.47162 * 329.99736 * 7 6 2 29 29 H 1.09002 * 109.47228 * 300.00037 * 8 7 6 30 30 H 1.08997 * 109.47650 * 59.99542 * 8 7 6 31 31 H 1.09005 * 109.47090 * 44.31099 * 10 9 8 32 32 H 1.09002 * 109.47257 * 164.30843 * 10 9 8 33 33 H 0.96997 * 119.99763 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.47160 * 284.05213 * 19 9 8 35 35 H 1.09010 * 109.47212 * 44.04898 * 19 9 8 36 36 H 1.08994 * 109.47305 * 299.54462 * 20 19 9 37 37 H 1.09008 * 109.47175 * 59.54452 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5040 0.9819 0.0055 5 16 3.9333 -0.6730 0.0122 6 6 2.2300 -1.1240 0.0059 7 6 1.6847 -2.5289 0.0078 8 6 1.5056 -3.0084 -1.4340 9 7 0.9735 -4.3777 -1.4321 10 6 0.5661 -4.7860 -2.7831 11 6 -0.7390 -4.1207 -3.1369 12 1 -1.1800 -3.4030 -2.4608 13 6 -1.3702 -4.4282 -4.3234 14 7 -0.8331 -5.3017 -5.1468 15 14 -2.9883 -3.6040 -4.7615 16 1 -3.3775 -2.6688 -3.6756 17 1 -2.8323 -2.8507 -6.0318 18 1 -4.0420 -4.6376 -4.9252 19 6 1.9489 -5.3207 -0.8689 20 6 1.2446 -6.6317 -0.5141 21 6 2.2240 -7.5806 0.0401 22 7 2.9823 -8.3122 0.4674 23 1 -0.3633 -0.0006 -1.0277 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3633 0.8901 0.5134 26 1 4.2058 1.8027 0.0066 27 1 2.3810 -3.1882 0.5261 28 1 0.7217 -2.5442 0.5181 29 1 0.8093 -2.3491 -1.9523 30 1 2.4686 -2.9931 -1.9444 31 1 1.3318 -4.4876 -3.4993 32 1 0.4421 -5.8685 -2.8137 33 1 -1.2770 -5.5177 -5.9818 34 1 2.7313 -5.5155 -1.6023 35 1 2.3921 -4.8915 0.0298 36 1 0.4676 -6.4382 0.2254 37 1 0.7945 -7.0568 -1.4113 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265732808.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:15 Heat of formation + Delta-G solvation = 64.082377 kcal Electronic energy + Delta-G solvation = -18940.020688 eV Core-core repulsion = 16037.082216 eV Total energy + Delta-G solvation = -2902.938472 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.86333 -37.74826 -36.20056 -33.61015 -32.69437 -31.10164 -29.85813 -27.29742 -25.95302 -24.59559 -23.42990 -22.39117 -19.98097 -18.74375 -18.04605 -17.29626 -16.58145 -15.63825 -15.24175 -14.91916 -14.67256 -14.36227 -14.05022 -13.55530 -13.46780 -13.23227 -12.69359 -12.51883 -12.42047 -12.38298 -12.22434 -12.10669 -11.58830 -11.36954 -11.25994 -11.08479 -10.94454 -10.73730 -10.52190 -10.28596 -9.87029 -9.62741 -9.31658 -9.16683 -8.62659 -8.48330 -7.49665 -6.09645 -4.10964 0.75207 1.39555 1.77642 2.83624 2.93043 2.98912 3.27460 3.36103 3.39367 4.11478 4.26011 4.39534 4.77668 5.07262 5.14506 5.23502 5.27061 5.35297 5.45871 5.48591 5.59929 5.73588 5.79339 5.89274 5.95744 5.98035 6.13875 6.22015 6.34777 6.41183 6.55100 7.04923 7.19720 7.70407 7.74967 7.75434 7.93284 8.03746 8.39303 8.96576 9.53936 11.00918 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.010303 B = 0.006032 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.080349 B = 4640.741713 C = 6831.837238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.056 3.944 3 N -0.466 5.466 4 C 0.009 3.991 5 S 0.102 5.898 6 C -0.198 4.198 7 C -0.044 4.044 8 C 0.073 3.927 9 N -0.532 5.532 10 C 0.188 3.812 11 C -0.505 4.505 12 H 0.065 0.935 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.895 3.105 16 H -0.271 1.271 17 H -0.286 1.286 18 H -0.284 1.284 19 C 0.056 3.944 20 C -0.027 4.027 21 C 0.219 3.781 22 N -0.460 5.460 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.195 0.805 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.023 0.977 31 H -0.008 1.008 32 H 0.039 0.961 33 H 0.261 0.739 34 H 0.034 0.966 35 H 0.069 0.931 36 H 0.116 0.884 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.054 8.212 10.176 14.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.075 4.075 3 N -0.180 5.180 4 C -0.289 4.289 5 S 0.355 5.645 6 C -0.320 4.320 7 C -0.084 4.084 8 C -0.056 4.056 9 N -0.256 5.256 10 C 0.064 3.936 11 C -0.543 4.543 12 H 0.083 0.917 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.723 3.277 16 H -0.196 1.196 17 H -0.212 1.212 18 H -0.210 1.210 19 C -0.074 4.074 20 C -0.067 4.067 21 C -0.098 4.098 22 N -0.138 5.138 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.088 0.912 26 H 0.212 0.788 27 H 0.090 0.910 28 H 0.114 0.886 29 H 0.107 0.893 30 H 0.041 0.959 31 H 0.010 0.990 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.087 0.913 36 H 0.134 0.866 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.489 7.067 10.936 15.021 hybrid contribution -1.132 0.803 -1.194 1.831 sum 6.357 7.870 9.742 14.045 Atomic orbital electron populations 1.20394 0.86761 1.03102 1.03555 1.20269 0.98417 0.86035 1.02802 1.66163 1.05007 1.31860 1.14961 1.28160 0.95259 0.99801 1.05647 1.83998 1.08113 1.03873 1.68482 1.25794 0.94270 1.01161 1.10732 1.20248 1.01406 0.87447 0.99307 1.21938 0.98568 0.91586 0.93503 1.62085 1.36320 0.99884 1.27323 1.19863 0.95477 0.97037 0.81265 1.21151 1.05605 1.24187 1.03383 0.91662 1.24969 0.97859 0.95314 0.96380 1.69948 1.39377 1.33478 1.10980 0.86491 0.83565 0.79350 0.78325 1.19561 1.21218 1.21041 1.21955 0.93990 0.91999 0.99498 1.19385 0.93503 0.90928 1.02922 1.29534 0.93894 0.93741 0.92649 1.81208 1.10750 1.11111 1.10716 0.90157 0.90185 0.91151 0.78816 0.91012 0.88584 0.89281 0.95866 0.99025 0.94336 0.92923 0.94803 0.91250 0.86633 0.86480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.06 36.01 0.36 -0.61 16 2 C 0.06 0.77 6.74 -84.22 -0.57 0.20 16 3 N -0.47 -6.49 10.53 -11.90 -0.13 -6.61 16 4 C 0.01 0.11 12.23 51.59 0.63 0.74 16 5 S 0.10 1.14 23.22 -107.50 -2.50 -1.35 16 6 C -0.20 -2.60 5.84 -35.92 -0.21 -2.81 16 7 C -0.04 -0.57 5.40 -27.88 -0.15 -0.72 16 8 C 0.07 1.18 4.77 -3.82 -0.02 1.16 16 9 N -0.53 -9.28 4.38 -236.08 -1.03 -10.31 16 10 C 0.19 4.23 4.59 -4.98 -0.02 4.20 16 11 C -0.50 -12.68 8.61 -34.44 -0.30 -12.98 16 12 H 0.07 1.62 7.66 -52.48 -0.40 1.22 16 13 C 0.06 1.48 5.46 -17.82 -0.10 1.38 16 14 N -0.90 -24.99 13.29 55.43 0.74 -24.26 16 15 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 16 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 C 0.06 0.80 4.79 -3.83 -0.02 0.78 16 20 C -0.03 -0.35 5.77 -29.52 -0.17 -0.52 16 21 C 0.22 3.12 15.44 -20.72 -0.32 2.80 16 22 N -0.46 -7.58 18.54 42.20 0.78 -6.80 16 23 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.08 0.90 6.71 -51.93 -0.35 0.55 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.20 1.47 8.06 -52.49 -0.42 1.05 16 27 H 0.07 0.85 6.28 -51.93 -0.33 0.53 16 28 H 0.10 1.21 6.75 -51.93 -0.35 0.86 16 29 H 0.09 1.64 7.32 -51.93 -0.38 1.26 16 30 H 0.02 0.39 8.12 -51.93 -0.42 -0.04 16 31 H -0.01 -0.20 8.00 -51.93 -0.42 -0.62 16 32 H 0.04 0.90 6.24 -51.93 -0.32 0.58 16 33 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.03 0.52 8.05 -51.93 -0.42 0.10 16 35 H 0.07 0.86 5.94 -51.92 -0.31 0.55 16 36 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.12 1.66 6.53 -51.92 -0.34 1.32 16 LS Contribution 328.91 15.07 4.96 4.96 Total: -1.00 -29.50 328.91 -7.94 -37.44 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -4.86 Total: -2.03 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -0.88 Total: -6.38 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: 0.36 Total: -47.98 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -2.50 Total: -1.35 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.50 -7.94 -37.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265732808.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.524 kcal (2) G-P(sol) polarization free energy of solvation -29.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds