Wall clock time and date at job start Tue Mar 31 2020 00:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31782 * 122.74843 * 2 1 4 4 C 1.29029 * 117.12531 * 179.72671 * 3 2 1 5 5 S 1.70974 * 110.16604 * 359.97438 * 4 3 2 6 6 C 1.33644 * 122.74982 * 179.69804 * 2 1 3 7 7 C 1.50699 * 126.03839 * 0.25795 * 6 2 1 8 8 C 1.52999 * 109.47208 * 89.99712 * 7 6 2 9 9 N 1.46902 * 109.47258 * 180.02562 * 8 7 6 10 10 C 1.46898 * 111.00002 * 169.99783 * 9 8 7 11 11 C 1.50697 * 109.47451 * 284.31350 * 10 9 8 12 12 H 1.08006 * 120.00068 * 4.65328 * 11 10 9 13 13 C 1.37878 * 120.00301 * 184.65987 * 11 10 9 14 14 N 1.31510 * 119.99866 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00116 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47283 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47545 * 119.99772 * 15 13 11 18 18 H 1.48506 * 109.47183 * 240.00137 * 15 13 11 19 19 C 1.46894 * 110.99896 * 293.95227 * 9 8 7 20 20 C 1.52993 * 109.47342 * 164.04914 * 19 9 8 21 21 C 1.47199 * 109.47615 * 179.53988 * 20 19 9 22 22 N 8.45508 * 100.04904 * 176.78161 * 2 1 3 23 23 H 1.09007 * 109.46897 * 90.03170 * 1 2 3 24 24 H 1.09002 * 109.47018 * 210.02290 * 1 2 3 25 25 H 1.08991 * 109.47348 * 330.02542 * 1 2 3 26 26 H 1.07993 * 124.91441 * 180.02562 * 4 3 2 27 27 H 1.08998 * 109.47274 * 209.99390 * 7 6 2 28 28 H 1.09001 * 109.47162 * 329.99736 * 7 6 2 29 29 H 1.09002 * 109.47228 * 300.00037 * 8 7 6 30 30 H 1.08997 * 109.47650 * 59.99542 * 8 7 6 31 31 H 1.09005 * 109.47090 * 44.31099 * 10 9 8 32 32 H 1.09002 * 109.47257 * 164.30843 * 10 9 8 33 33 H 0.96997 * 119.99763 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.47160 * 284.05213 * 19 9 8 35 35 H 1.09010 * 109.47212 * 44.04898 * 19 9 8 36 36 H 1.08994 * 109.47305 * 299.54462 * 20 19 9 37 37 H 1.09008 * 109.47175 * 59.54452 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5040 0.9819 0.0055 5 16 3.9333 -0.6730 0.0122 6 6 2.2300 -1.1240 0.0059 7 6 1.6847 -2.5289 0.0078 8 6 1.5056 -3.0084 -1.4340 9 7 0.9735 -4.3777 -1.4321 10 6 0.5661 -4.7860 -2.7831 11 6 -0.7390 -4.1207 -3.1369 12 1 -1.1800 -3.4030 -2.4608 13 6 -1.3702 -4.4282 -4.3234 14 7 -0.8331 -5.3017 -5.1468 15 14 -2.9883 -3.6040 -4.7615 16 1 -3.3775 -2.6688 -3.6756 17 1 -2.8323 -2.8507 -6.0318 18 1 -4.0420 -4.6376 -4.9252 19 6 1.9489 -5.3207 -0.8689 20 6 1.2446 -6.6317 -0.5141 21 6 2.2240 -7.5806 0.0401 22 7 2.9823 -8.3122 0.4674 23 1 -0.3633 -0.0006 -1.0277 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3633 0.8901 0.5134 26 1 4.2058 1.8027 0.0066 27 1 2.3810 -3.1882 0.5261 28 1 0.7217 -2.5442 0.5181 29 1 0.8093 -2.3491 -1.9523 30 1 2.4686 -2.9931 -1.9444 31 1 1.3318 -4.4876 -3.4993 32 1 0.4421 -5.8685 -2.8137 33 1 -1.2770 -5.5177 -5.9818 34 1 2.7313 -5.5155 -1.6023 35 1 2.3921 -4.8915 0.0298 36 1 0.4676 -6.4382 0.2254 37 1 0.7945 -7.0568 -1.4113 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265732808.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:14 Heat of formation + Delta-G solvation = 46.266500 kcal Electronic energy + Delta-G solvation = -18940.793242 eV Core-core repulsion = 16037.082216 eV Total energy + Delta-G solvation = -2903.711027 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.83169 -39.09365 -37.45593 -34.96425 -34.34854 -32.28403 -31.10119 -28.83929 -27.19522 -25.58683 -24.90661 -23.78128 -21.39497 -19.72322 -18.98975 -18.57573 -18.34938 -16.88245 -16.54191 -16.08970 -15.93853 -15.90946 -15.26702 -14.85270 -14.55362 -14.33168 -14.14023 -13.87115 -13.66248 -13.53432 -13.41902 -13.30251 -12.96882 -12.78877 -12.56486 -12.49586 -12.36416 -12.21899 -12.01760 -11.72067 -11.33007 -11.15379 -10.57048 -10.50231 -10.12269 -9.58074 -9.00741 -8.10400 -6.17050 -0.18086 0.49500 0.85225 1.46624 1.49920 1.60518 1.75696 1.83115 1.86282 2.47878 2.91621 3.23916 3.39602 3.55530 4.01534 4.10866 4.20177 4.30645 4.30742 4.39587 4.49443 4.60468 4.76869 4.82863 4.90943 4.98849 4.99595 5.12394 5.18821 5.21213 5.36062 5.38299 5.48093 5.78106 6.17306 6.37502 6.60518 6.66670 6.81643 6.99182 7.51985 9.00019 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.010303 B = 0.006032 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.080349 B = 4640.741713 C = 6831.837238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.043 3.957 3 N -0.499 5.499 4 C 0.016 3.984 5 S 0.132 5.868 6 C -0.221 4.221 7 C -0.030 4.030 8 C 0.078 3.922 9 N -0.527 5.527 10 C 0.200 3.800 11 C -0.507 4.507 12 H 0.067 0.933 13 C 0.004 3.996 14 N -0.935 5.935 15 Si 0.954 3.046 16 H -0.260 1.260 17 H -0.289 1.289 18 H -0.282 1.282 19 C 0.055 3.945 20 C -0.017 4.017 21 C 0.244 3.756 22 N -0.496 5.496 23 H 0.068 0.932 24 H 0.088 0.912 25 H 0.076 0.924 26 H 0.229 0.771 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.062 0.938 30 H 0.015 0.985 31 H -0.041 1.041 32 H 0.029 0.971 33 H 0.261 0.739 34 H 0.024 0.976 35 H 0.098 0.902 36 H 0.141 0.859 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.198 9.109 11.690 16.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.088 4.088 3 N -0.213 5.213 4 C -0.281 4.281 5 S 0.385 5.615 6 C -0.343 4.343 7 C -0.070 4.070 8 C -0.051 4.051 9 N -0.251 5.251 10 C 0.074 3.926 11 C -0.546 4.546 12 H 0.085 0.915 13 C -0.193 4.193 14 N -0.577 5.577 15 Si 0.781 3.219 16 H -0.184 1.184 17 H -0.215 1.215 18 H -0.208 1.208 19 C -0.074 4.074 20 C -0.057 4.057 21 C -0.072 4.072 22 N -0.175 5.175 23 H 0.087 0.913 24 H 0.107 0.893 25 H 0.095 0.905 26 H 0.245 0.755 27 H 0.106 0.894 28 H 0.120 0.880 29 H 0.081 0.919 30 H 0.034 0.966 31 H -0.023 1.023 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.043 0.957 35 H 0.116 0.884 36 H 0.159 0.841 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 7.640 7.971 12.477 16.660 hybrid contribution -1.077 0.587 -1.657 2.061 sum 6.564 8.558 10.820 15.277 Atomic orbital electron populations 1.20404 0.86457 1.03889 1.03010 1.20508 0.99058 0.86425 1.02784 1.66212 1.06176 1.32204 1.16743 1.28803 0.95059 1.00962 1.03271 1.83874 1.06368 1.03531 1.67687 1.25830 0.95658 1.00915 1.11877 1.20065 1.02316 0.87802 0.96768 1.21855 0.97173 0.90340 0.95707 1.61975 1.37944 1.01113 1.24091 1.19539 0.93710 0.96087 0.83216 1.21501 1.06284 1.23636 1.03133 0.91531 1.25736 1.01017 0.95990 0.96583 1.70062 1.40930 1.35177 1.11486 0.85550 0.79897 0.78501 0.77995 1.18394 1.21538 1.20823 1.22044 0.93189 0.92086 1.00103 1.19339 0.93473 0.89772 1.03088 1.29541 0.93104 0.93030 0.91556 1.81242 1.11876 1.12205 1.12157 0.91288 0.89308 0.90487 0.75496 0.89364 0.87987 0.91924 0.96638 1.02305 0.95339 0.93059 0.95719 0.88413 0.84126 0.87569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.87 10.06 71.24 0.72 -1.16 16 2 C 0.04 1.14 6.74 41.52 0.28 1.42 16 3 N -0.50 -13.15 10.53 -191.55 -2.02 -15.17 16 4 C 0.02 0.33 12.23 130.65 1.60 1.93 16 5 S 0.13 2.65 23.22 -56.49 -1.31 1.34 16 6 C -0.22 -5.46 5.84 24.64 0.14 -5.32 16 7 C -0.03 -0.71 5.40 29.85 0.16 -0.55 16 8 C 0.08 2.49 4.77 86.30 0.41 2.90 16 9 N -0.53 -18.00 4.38 -900.81 -3.95 -21.95 16 10 C 0.20 9.13 4.59 85.56 0.39 9.53 16 11 C -0.51 -25.62 8.61 25.60 0.22 -25.40 16 12 H 0.07 3.29 7.66 -2.91 -0.02 3.26 16 13 C 0.00 0.23 5.46 84.66 0.46 0.70 16 14 N -0.94 -52.93 13.29 21.45 0.28 -52.64 16 15 Si 0.95 41.83 29.54 68.60 2.03 43.86 16 16 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 17 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 19 C 0.06 1.50 4.79 86.30 0.41 1.91 16 20 C -0.02 -0.40 5.77 28.79 0.17 -0.23 16 21 C 0.24 6.54 15.44 89.43 1.38 7.92 16 22 N -0.50 -15.76 18.54 20.02 0.37 -15.38 16 23 H 0.07 1.77 8.14 -2.38 -0.02 1.76 16 24 H 0.09 1.90 6.71 -2.39 -0.02 1.88 16 25 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.23 2.71 8.06 -2.91 -0.02 2.69 16 27 H 0.09 1.82 6.28 -2.39 -0.02 1.81 16 28 H 0.10 2.35 6.75 -2.39 -0.02 2.33 16 29 H 0.06 2.32 7.32 -2.39 -0.02 2.31 16 30 H 0.02 0.51 8.12 -2.39 -0.02 0.49 16 31 H -0.04 -2.10 8.00 -2.38 -0.02 -2.12 16 32 H 0.03 1.36 6.24 -2.39 -0.01 1.34 16 33 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 34 H 0.02 0.73 8.05 -2.39 -0.02 0.71 16 35 H 0.10 2.13 5.94 -2.38 -0.01 2.12 16 36 H 0.14 2.77 8.14 -2.39 -0.02 2.76 16 37 H 0.11 2.92 6.53 -2.38 -0.02 2.90 16 Total: -1.00 -63.58 328.91 2.83 -60.74 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: 1.08 Total: 5.56 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: 6.35 Total: -6.35 kcal Atomic # 7 Polarization: -99.84 SS G_CDS: -5.31 Total: -105.15 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -1.31 Total: 1.34 kcal Total: -63.58 2.83 -60.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265732808.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.011 kcal (2) G-P(sol) polarization free energy of solvation -63.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds