Wall clock time and date at job start Tue Mar 31 2020 00:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33638 * 126.03854 * 2 1 4 4 N 1.31785 * 114.50130 * 179.78985 * 3 2 1 5 5 C 1.29031 * 117.11884 * 0.51781 * 4 3 2 6 6 C 1.50705 * 124.90906 * 179.67999 * 5 4 3 7 7 H 1.09003 * 109.46403 * 165.04227 * 6 5 4 8 8 C 1.53001 * 109.47143 * 285.03637 * 6 5 4 9 9 N 1.46895 * 109.47349 * 45.04159 * 6 5 4 10 10 C 1.46903 * 111.00159 * 154.99599 * 9 6 5 11 11 C 1.52994 * 109.47054 * 179.97438 * 10 9 6 12 12 H 1.08992 * 109.47378 * 304.99740 * 11 10 9 13 13 C 1.47202 * 109.47205 * 65.00493 * 11 10 9 14 14 N 6.87664 * 138.10305 * 86.71242 * 2 1 3 15 15 C 1.53006 * 109.46658 * 185.00073 * 11 10 9 16 16 C 1.50705 * 109.46836 * 175.00183 * 15 11 10 17 17 H 1.07993 * 119.99972 * 0.02562 * 16 15 11 18 18 C 1.37879 * 119.99753 * 180.02562 * 16 15 11 19 19 N 1.31512 * 119.99781 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99639 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47030 * 60.00200 * 20 18 16 22 22 H 1.48504 * 109.46665 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47247 * 299.99877 * 20 18 16 24 24 S 1.70976 * 110.17099 * 359.71846 * 5 4 3 25 25 H 1.09002 * 109.47152 * 269.69193 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.69293 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.69274 * 1 2 3 28 28 H 1.08000 * 122.74772 * 359.97438 * 3 2 1 29 29 H 1.08994 * 109.47613 * 300.00947 * 8 6 5 30 30 H 1.09008 * 109.46882 * 60.00500 * 8 6 5 31 31 H 1.09000 * 109.47023 * 179.97438 * 8 6 5 32 32 H 1.00895 * 111.00050 * 278.95176 * 9 6 5 33 33 H 1.08997 * 109.46742 * 300.00693 * 10 9 6 34 34 H 1.09007 * 109.46722 * 60.00101 * 10 9 6 35 35 H 1.08996 * 109.47257 * 294.99747 * 15 11 10 36 36 H 1.08998 * 109.47183 * 55.00543 * 15 11 10 37 37 H 0.97001 * 119.98975 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0806 0.0000 4 7 3.5845 0.8171 0.0044 5 6 3.9311 -0.4258 -0.0023 6 6 5.3532 -0.9245 -0.0057 7 1 5.3675 -1.9831 0.2540 8 6 5.9575 -0.7329 -1.3982 9 7 6.1398 -0.1683 0.9777 10 6 7.2949 -0.9490 1.4406 11 6 8.0882 -0.1300 2.4608 12 1 8.3600 0.8305 2.0232 13 6 7.2632 0.0927 3.6594 14 7 6.6256 0.2633 4.5846 15 6 9.3574 -0.8909 2.8494 16 6 10.1989 -0.0329 3.7588 17 1 9.8618 0.9559 4.0325 18 6 11.3989 -0.5104 4.2413 19 7 11.8095 -1.7144 3.9076 20 14 12.4422 0.5534 5.3680 21 1 11.6693 0.8840 6.5922 22 1 13.6747 -0.1847 5.7443 23 1 12.8123 1.8067 4.6627 24 16 2.5436 -1.4248 -0.0077 25 1 -0.3633 -0.0055 1.0277 26 1 -0.3633 -0.8872 -0.5186 27 1 -0.3633 0.8928 -0.5091 28 1 1.9025 2.0874 -0.0004 29 1 5.3739 -1.2940 -2.1280 30 1 5.9431 0.3256 -1.6580 31 1 6.9862 -1.0932 -1.4006 32 1 6.4319 0.7207 0.6005 33 1 6.9471 -1.8713 1.9058 34 1 7.9348 -1.1892 0.5915 35 1 9.0855 -1.8108 3.3670 36 1 9.9250 -1.1335 1.9511 37 1 12.6537 -2.0503 4.2474 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267480016.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:45 Heat of formation + Delta-G solvation = 52.073667 kcal Electronic energy + Delta-G solvation = -18473.504593 eV Core-core repulsion = 15570.045384 eV Total energy + Delta-G solvation = -2903.459209 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.86672 -37.65934 -35.79565 -33.77963 -32.81278 -31.86088 -29.62921 -27.17917 -26.22716 -24.69099 -23.05229 -22.14609 -21.72051 -19.00470 -18.27674 -16.97721 -16.38602 -15.64516 -15.13038 -14.90242 -14.57046 -14.49164 -14.17530 -13.48783 -13.42910 -13.22448 -13.01261 -12.82676 -12.56467 -12.27358 -12.06685 -11.92237 -11.63157 -11.47371 -11.32322 -11.22930 -11.04232 -10.67976 -10.55001 -10.22900 -9.68372 -9.51599 -9.30172 -9.24028 -8.85559 -8.45210 -8.32926 -6.09148 -4.12106 0.62008 1.21031 1.64232 2.79423 3.32111 3.36111 3.40283 3.76990 3.87111 4.06043 4.26618 4.43593 4.72561 4.76037 4.90524 4.92150 4.95951 5.13781 5.19712 5.29108 5.48328 5.50182 5.54221 5.57056 5.66056 5.77322 5.92023 6.03086 6.14537 6.37156 6.49472 7.00215 7.41887 7.46832 7.53548 7.73894 7.86273 8.23792 8.62248 8.92469 9.53333 11.01737 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.034610 B = 0.003234 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.819352 B = 8657.188675 C = 9008.815354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.233 4.233 3 C 0.036 3.964 4 N -0.458 5.458 5 C 0.073 3.927 6 C 0.161 3.839 7 H 0.097 0.903 8 C -0.175 4.175 9 N -0.678 5.678 10 C 0.066 3.934 11 C 0.010 3.990 12 H 0.100 0.900 13 C 0.255 3.745 14 N -0.479 5.479 15 C 0.033 3.967 16 C -0.527 4.527 17 H 0.056 0.944 18 C 0.063 3.937 19 N -0.892 5.892 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.275 1.275 24 S 0.108 5.892 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.171 0.829 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.352 0.648 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.026 0.974 36 H 0.038 0.962 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.207 -0.129 -14.401 23.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.354 4.354 3 C -0.115 4.115 4 N -0.171 5.171 5 C -0.206 4.206 6 C 0.047 3.953 7 H 0.115 0.885 8 C -0.236 4.236 9 N -0.310 5.310 10 C -0.064 4.064 11 C -0.012 4.012 12 H 0.118 0.882 13 C -0.062 4.062 14 N -0.155 5.155 15 C -0.006 4.006 16 C -0.565 4.565 17 H 0.075 0.925 18 C -0.139 4.139 19 N -0.531 5.531 20 Si 0.719 3.281 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.201 1.201 24 S 0.363 5.637 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.188 0.812 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.172 0.828 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.045 0.955 36 H 0.056 0.944 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.158 -0.847 -12.434 22.855 hybrid contribution 1.123 1.450 -0.350 1.867 sum -18.035 0.603 -12.784 22.114 Atomic orbital electron populations 1.20194 0.86995 1.03134 1.02859 1.25922 1.01438 0.95099 1.12979 1.21720 0.87127 0.99916 1.02759 1.66142 1.17179 1.18664 1.15085 1.27048 1.00146 0.91212 1.02216 1.20022 0.85478 0.97772 0.91989 0.88456 1.22478 1.01639 1.03279 0.96162 1.60362 1.24154 1.06733 1.39754 1.22161 0.90166 0.96896 0.97193 1.19205 0.93835 1.01664 0.86461 0.88202 1.28859 0.91516 0.92023 0.93846 1.81000 1.12406 1.09954 1.12187 1.19162 0.88277 0.95393 0.97769 1.21113 1.04367 1.01542 1.29469 0.92535 1.24946 0.97688 0.95027 0.96274 1.69928 1.21848 1.16525 1.44782 0.86653 0.79604 0.80497 0.81327 1.20216 1.21199 1.20052 1.83916 0.99115 1.11735 1.68929 0.90659 0.91287 0.90392 0.81169 0.91981 0.91388 0.90885 0.82760 0.90380 0.92838 0.95544 0.94393 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.42 36.01 0.38 -0.11 16 2 C -0.23 -2.36 6.60 -35.92 -0.24 -2.59 16 3 C 0.04 0.41 11.25 -19.18 -0.22 0.20 16 4 N -0.46 -6.22 10.50 -11.86 -0.12 -6.34 16 5 C 0.07 0.91 6.25 -13.45 -0.08 0.82 16 6 C 0.16 1.84 3.09 -68.86 -0.21 1.63 16 7 H 0.10 1.02 7.80 -51.93 -0.40 0.62 16 8 C -0.18 -1.64 9.14 37.16 0.34 -1.30 16 9 N -0.68 -9.17 5.90 -107.95 -0.64 -9.81 16 10 C 0.07 0.94 4.85 -3.83 -0.02 0.92 16 11 C 0.01 0.19 2.35 -93.41 -0.22 -0.03 16 12 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 13 C 0.25 5.45 13.67 -20.74 -0.28 5.16 16 14 N -0.48 -11.25 18.54 42.17 0.78 -10.47 16 15 C 0.03 0.75 4.42 -27.88 -0.12 0.62 16 16 C -0.53 -14.04 8.60 -34.44 -0.30 -14.33 16 17 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 20 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 S 0.11 1.14 23.18 -107.50 -2.49 -1.36 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.67 8.13 -51.92 -0.42 0.25 16 31 H 0.07 0.63 7.45 -51.93 -0.39 0.25 16 32 H 0.35 4.60 8.47 -39.29 -0.33 4.27 16 33 H 0.08 1.14 8.05 -51.93 -0.42 0.73 16 34 H 0.05 0.67 7.44 -51.93 -0.39 0.28 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 336.66 15.07 5.07 5.07 Total: -1.00 -31.83 336.66 -8.02 -39.85 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -5.27 Total: -1.20 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -1.07 Total: -7.38 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: 0.76 Total: -51.36 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -2.49 Total: -1.36 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.83 -8.02 -39.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267480016.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.926 kcal (2) G-P(sol) polarization free energy of solvation -31.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds