Wall clock time and date at job start Tue Mar 31 2020 00:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33638 * 126.03854 * 2 1 4 4 N 1.31785 * 114.50130 * 179.78985 * 3 2 1 5 5 C 1.29031 * 117.11884 * 0.51781 * 4 3 2 6 6 C 1.50705 * 124.90906 * 179.67999 * 5 4 3 7 7 H 1.09003 * 109.46403 * 165.04227 * 6 5 4 8 8 C 1.53001 * 109.47143 * 285.03637 * 6 5 4 9 9 N 1.46895 * 109.47349 * 45.04159 * 6 5 4 10 10 C 1.46903 * 111.00159 * 154.99599 * 9 6 5 11 11 C 1.52994 * 109.47054 * 179.97438 * 10 9 6 12 12 H 1.08992 * 109.47378 * 304.99740 * 11 10 9 13 13 C 1.47202 * 109.47205 * 65.00493 * 11 10 9 14 14 N 6.87664 * 138.10305 * 86.71242 * 2 1 3 15 15 C 1.53006 * 109.46658 * 185.00073 * 11 10 9 16 16 C 1.50705 * 109.46836 * 175.00183 * 15 11 10 17 17 H 1.07993 * 119.99972 * 0.02562 * 16 15 11 18 18 C 1.37879 * 119.99753 * 180.02562 * 16 15 11 19 19 N 1.31512 * 119.99781 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99639 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47030 * 60.00200 * 20 18 16 22 22 H 1.48504 * 109.46665 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47247 * 299.99877 * 20 18 16 24 24 S 1.70976 * 110.17099 * 359.71846 * 5 4 3 25 25 H 1.09002 * 109.47152 * 269.69193 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.69293 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.69274 * 1 2 3 28 28 H 1.08000 * 122.74772 * 359.97438 * 3 2 1 29 29 H 1.08994 * 109.47613 * 300.00947 * 8 6 5 30 30 H 1.09008 * 109.46882 * 60.00500 * 8 6 5 31 31 H 1.09000 * 109.47023 * 179.97438 * 8 6 5 32 32 H 1.00895 * 111.00050 * 278.95176 * 9 6 5 33 33 H 1.08997 * 109.46742 * 300.00693 * 10 9 6 34 34 H 1.09007 * 109.46722 * 60.00101 * 10 9 6 35 35 H 1.08996 * 109.47257 * 294.99747 * 15 11 10 36 36 H 1.08998 * 109.47183 * 55.00543 * 15 11 10 37 37 H 0.97001 * 119.98975 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0806 0.0000 4 7 3.5845 0.8171 0.0044 5 6 3.9311 -0.4258 -0.0023 6 6 5.3532 -0.9245 -0.0057 7 1 5.3675 -1.9831 0.2540 8 6 5.9575 -0.7329 -1.3982 9 7 6.1398 -0.1683 0.9777 10 6 7.2949 -0.9490 1.4406 11 6 8.0882 -0.1300 2.4608 12 1 8.3600 0.8305 2.0232 13 6 7.2632 0.0927 3.6594 14 7 6.6256 0.2633 4.5846 15 6 9.3574 -0.8909 2.8494 16 6 10.1989 -0.0329 3.7588 17 1 9.8618 0.9559 4.0325 18 6 11.3989 -0.5104 4.2413 19 7 11.8095 -1.7144 3.9076 20 14 12.4422 0.5534 5.3680 21 1 11.6693 0.8840 6.5922 22 1 13.6747 -0.1847 5.7443 23 1 12.8123 1.8067 4.6627 24 16 2.5436 -1.4248 -0.0077 25 1 -0.3633 -0.0055 1.0277 26 1 -0.3633 -0.8872 -0.5186 27 1 -0.3633 0.8928 -0.5091 28 1 1.9025 2.0874 -0.0004 29 1 5.3739 -1.2940 -2.1280 30 1 5.9431 0.3256 -1.6580 31 1 6.9862 -1.0932 -1.4006 32 1 6.4319 0.7207 0.6005 33 1 6.9471 -1.8713 1.9058 34 1 7.9348 -1.1892 0.5915 35 1 9.0855 -1.8108 3.3670 36 1 9.9250 -1.1335 1.9511 37 1 12.6537 -2.0503 4.2474 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267480016.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:44 Heat of formation + Delta-G solvation = 31.766068 kcal Electronic energy + Delta-G solvation = -18474.385197 eV Core-core repulsion = 15570.045384 eV Total energy + Delta-G solvation = -2904.339812 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.72286 -38.93066 -37.19288 -35.54809 -34.14958 -33.04287 -30.87331 -27.95026 -27.86729 -25.50636 -24.46118 -23.48067 -23.00909 -19.87394 -19.19423 -18.49826 -18.25874 -16.68799 -16.57119 -15.95302 -15.80437 -15.52494 -15.29440 -14.74301 -14.54186 -14.31605 -14.05944 -13.84937 -13.72025 -13.57681 -13.42429 -13.19549 -13.02208 -12.85008 -12.75146 -12.46560 -12.37018 -12.27783 -12.06022 -11.89324 -11.40032 -11.16272 -10.53737 -10.50412 -10.12346 -9.68025 -9.32296 -8.18565 -6.26215 -0.20682 0.41111 0.81281 1.41349 1.43035 1.50008 1.93202 2.07313 2.14498 2.42336 3.16451 3.19508 3.28388 3.38513 3.93144 4.06760 4.10145 4.28041 4.30486 4.36033 4.42466 4.71497 4.72235 4.72668 4.85653 4.91466 4.96684 5.01959 5.07500 5.24162 5.36444 5.48727 5.64527 5.80437 5.97129 6.22749 6.45863 6.84273 6.89375 6.94317 7.42056 8.92048 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.034610 B = 0.003234 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.819352 B = 8657.188675 C = 9008.815354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.226 4.226 3 C 0.010 3.990 4 N -0.485 5.485 5 C 0.050 3.950 6 C 0.161 3.839 7 H 0.105 0.895 8 C -0.166 4.166 9 N -0.691 5.691 10 C 0.079 3.921 11 C 0.020 3.980 12 H 0.118 0.882 13 C 0.266 3.734 14 N -0.519 5.519 15 C 0.040 3.960 16 C -0.541 4.541 17 H 0.052 0.948 18 C 0.013 3.987 19 N -0.922 5.922 20 Si 0.946 3.054 21 H -0.283 1.283 22 H -0.281 1.281 23 H -0.263 1.263 24 S 0.124 5.876 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.186 0.814 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.354 0.646 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.002 0.998 36 H 0.040 0.960 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.998 0.091 -15.498 24.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.348 4.348 3 C -0.141 4.141 4 N -0.199 5.199 5 C -0.229 4.229 6 C 0.047 3.953 7 H 0.123 0.877 8 C -0.227 4.227 9 N -0.324 5.324 10 C -0.051 4.051 11 C -0.002 4.002 12 H 0.136 0.864 13 C -0.050 4.050 14 N -0.197 5.197 15 C 0.001 3.999 16 C -0.579 4.579 17 H 0.070 0.930 18 C -0.186 4.186 19 N -0.562 5.562 20 Si 0.772 3.228 21 H -0.209 1.209 22 H -0.206 1.206 23 H -0.188 1.188 24 S 0.379 5.621 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.113 0.887 28 H 0.203 0.797 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.175 0.825 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.020 0.980 36 H 0.058 0.942 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.954 -0.618 -13.545 24.125 hybrid contribution 1.280 1.373 -0.015 1.878 sum -18.674 0.755 -13.560 23.090 Atomic orbital electron populations 1.20347 0.84620 1.04611 1.03681 1.26382 1.02991 0.94428 1.10965 1.22039 0.86881 1.01153 1.03980 1.66131 1.18444 1.19528 1.15759 1.27213 1.01069 0.91490 1.03140 1.20114 0.84950 0.97720 0.92479 0.87695 1.22395 1.02147 1.03015 0.95113 1.60267 1.23824 1.07063 1.41202 1.21969 0.90576 0.95804 0.96758 1.19213 0.92128 1.02592 0.86279 0.86387 1.29476 0.90919 0.90813 0.93836 1.80995 1.13915 1.11436 1.13371 1.18980 0.89793 0.94273 0.96853 1.21538 1.04833 1.01773 1.29740 0.92993 1.25677 0.99066 0.96135 0.97741 1.70015 1.22349 1.17801 1.46014 0.85789 0.78175 0.79510 0.79340 1.20882 1.20642 1.18786 1.83796 0.98383 1.11531 1.68420 0.89997 0.90081 0.88660 0.79736 0.90859 0.92137 0.89957 0.82546 0.90740 0.90320 0.97972 0.94168 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 10.42 71.24 0.74 -0.07 16 2 C -0.23 -4.22 6.60 24.64 0.16 -4.06 16 3 C 0.01 0.21 11.25 83.66 0.94 1.15 16 4 N -0.48 -12.85 10.50 -191.44 -2.01 -14.87 16 5 C 0.05 1.18 6.25 88.52 0.55 1.74 16 6 C 0.16 3.44 3.09 44.17 0.14 3.58 16 7 H 0.11 2.04 7.80 -2.39 -0.02 2.02 16 8 C -0.17 -2.81 9.14 71.98 0.66 -2.15 16 9 N -0.69 -17.81 5.90 -495.44 -2.93 -20.73 16 10 C 0.08 2.13 4.85 86.30 0.42 2.55 16 11 C 0.02 0.70 2.35 -12.60 -0.03 0.67 16 12 H 0.12 3.82 8.14 -2.39 -0.02 3.80 16 13 C 0.27 11.29 13.67 89.44 1.22 12.51 16 14 N -0.52 -24.48 18.54 20.01 0.37 -24.11 16 15 C 0.04 1.81 4.42 29.85 0.13 1.94 16 16 C -0.54 -28.67 8.60 25.60 0.22 -28.45 16 17 H 0.05 2.74 7.59 -2.91 -0.02 2.72 16 18 C 0.01 0.71 5.46 84.66 0.46 1.17 16 19 N -0.92 -52.67 13.29 21.45 0.28 -52.39 16 20 Si 0.95 43.60 29.54 68.60 2.03 45.62 16 21 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 24 S 0.12 2.44 23.18 -56.49 -1.31 1.13 16 25 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 28 H 0.19 3.25 8.06 -2.91 -0.02 3.22 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 1.12 8.13 -2.38 -0.02 1.10 16 31 H 0.08 1.23 7.45 -2.39 -0.02 1.21 16 32 H 0.35 8.80 8.47 -89.70 -0.76 8.04 16 33 H 0.07 2.09 8.05 -2.39 -0.02 2.07 16 34 H 0.08 1.76 7.44 -2.38 -0.02 1.74 16 35 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 36 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -67.70 336.66 2.37 -65.33 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 0.32 Total: 9.44 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: 5.62 Total: -9.42 kcal Atomic # 7 Polarization: -107.82 SS G_CDS: -4.28 Total: -112.10 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -1.31 Total: 1.13 kcal Total: -67.70 2.37 -65.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267480016.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.092 kcal (2) G-P(sol) polarization free energy of solvation -67.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds