Wall clock time and date at job start Tue Mar 31 2020 00:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33638 * 126.03854 * 2 1 4 4 N 1.31785 * 114.50130 * 179.78985 * 3 2 1 5 5 C 1.29031 * 117.11884 * 0.51781 * 4 3 2 6 6 C 1.50705 * 124.90906 * 179.67999 * 5 4 3 7 7 H 1.09003 * 109.46403 * 165.04227 * 6 5 4 8 8 C 1.53001 * 109.47143 * 285.03637 * 6 5 4 9 9 N 1.46895 * 109.47349 * 45.04159 * 6 5 4 10 10 C 1.46903 * 111.00159 * 154.99599 * 9 6 5 11 11 C 1.52994 * 109.47054 * 179.97438 * 10 9 6 12 12 H 1.09001 * 109.47093 * 55.00626 * 11 10 9 13 13 C 1.47197 * 109.47359 * 294.99896 * 11 10 9 14 14 N 7.94928 * 162.74662 * 33.27170 * 2 1 3 15 15 C 1.53009 * 109.46703 * 175.00000 * 11 10 9 16 16 C 1.50698 * 109.46825 * 184.99823 * 15 11 10 17 17 H 1.08003 * 120.00543 * 0.02562 * 16 15 11 18 18 C 1.37875 * 119.99835 * 180.02562 * 16 15 11 19 19 N 1.31510 * 120.00066 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99955 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47199 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47005 * 120.00085 * 20 18 16 23 23 H 1.48499 * 109.46910 * 239.99944 * 20 18 16 24 24 S 1.70976 * 110.17099 * 359.71846 * 5 4 3 25 25 H 1.09002 * 109.47152 * 269.69193 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.69293 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.69274 * 1 2 3 28 28 H 1.08000 * 122.74772 * 359.97438 * 3 2 1 29 29 H 1.09008 * 109.46882 * 60.00500 * 8 6 5 30 30 H 1.09000 * 109.47023 * 179.97438 * 8 6 5 31 31 H 1.08994 * 109.47613 * 300.00947 * 8 6 5 32 32 H 1.00895 * 111.00050 * 278.95176 * 9 6 5 33 33 H 1.08997 * 109.46742 * 300.00693 * 10 9 6 34 34 H 1.09007 * 109.46722 * 60.00101 * 10 9 6 35 35 H 1.08998 * 109.47361 * 304.99988 * 15 11 10 36 36 H 1.08998 * 109.47127 * 65.00310 * 15 11 10 37 37 H 0.97003 * 120.00221 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0806 0.0000 4 7 3.5845 0.8171 0.0044 5 6 3.9311 -0.4258 -0.0023 6 6 5.3532 -0.9245 -0.0057 7 1 5.3675 -1.9831 0.2540 8 6 5.9575 -0.7329 -1.3982 9 7 6.1398 -0.1683 0.9777 10 6 7.2949 -0.9490 1.4406 11 6 8.0882 -0.1300 2.4608 12 1 7.4260 0.1860 3.2669 13 6 8.6587 1.0558 1.8011 14 7 9.0986 1.9713 1.2935 15 6 9.2179 -0.9872 3.0352 16 6 9.9223 -0.2237 4.1270 17 1 9.5966 0.7730 4.3857 18 6 10.9827 -0.7977 4.7957 19 7 11.3791 -2.0115 4.4811 20 14 11.8554 0.1484 6.1496 21 1 11.2205 1.4811 6.3105 22 1 11.7532 -0.6053 7.4250 23 1 13.2858 0.3210 5.7898 24 16 2.5436 -1.4248 -0.0077 25 1 -0.3633 -0.0055 1.0277 26 1 -0.3633 -0.8872 -0.5186 27 1 -0.3633 0.8928 -0.5091 28 1 1.9025 2.0874 -0.0004 29 1 5.9431 0.3256 -1.6580 30 1 6.9862 -1.0932 -1.4006 31 1 5.3739 -1.2940 -2.1280 32 1 6.4319 0.7207 0.6005 33 1 6.9471 -1.8713 1.9058 34 1 7.9348 -1.1892 0.5915 35 1 8.8030 -1.9079 3.4452 36 1 9.9283 -1.2292 2.2447 37 1 12.1254 -2.4152 4.9513 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267480019.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:47 Heat of formation + Delta-G solvation = 51.972220 kcal Electronic energy + Delta-G solvation = -18463.033645 eV Core-core repulsion = 15559.570037 eV Total energy + Delta-G solvation = -2903.463608 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.88257 -37.74594 -35.85474 -33.86709 -32.82045 -31.87845 -29.64053 -27.18827 -26.22757 -24.69671 -23.06494 -22.20778 -21.72468 -18.97763 -18.26552 -16.73830 -16.54650 -15.81302 -15.14472 -15.04770 -14.68815 -14.43128 -14.10103 -13.55664 -13.27331 -13.15097 -13.03421 -12.82072 -12.74082 -12.39158 -12.09221 -12.00287 -11.71238 -11.50564 -11.33218 -11.22272 -11.03194 -10.75091 -10.52447 -10.27427 -9.68697 -9.52685 -9.31420 -9.21817 -8.87183 -8.45721 -8.36004 -6.09469 -4.12230 0.60610 1.19571 1.62755 2.78248 3.29111 3.37284 3.42423 3.59199 3.65619 4.04926 4.26459 4.43425 4.71429 4.73413 4.82916 4.89571 4.96238 5.13235 5.18635 5.28825 5.46871 5.49398 5.51447 5.55198 5.64912 5.74981 5.95017 6.12191 6.13425 6.34799 6.54121 6.99795 7.40327 7.43928 7.53148 7.73430 7.86163 8.23604 8.42466 8.92608 9.53335 11.01470 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.029506 B = 0.003192 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.728615 B = 8770.487311 C = 8831.513735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.233 4.233 3 C 0.036 3.964 4 N -0.459 5.459 5 C 0.073 3.927 6 C 0.161 3.839 7 H 0.100 0.900 8 C -0.177 4.177 9 N -0.676 5.676 10 C 0.066 3.934 11 C 0.008 3.992 12 H 0.111 0.889 13 C 0.240 3.760 14 N -0.474 5.474 15 C 0.033 3.967 16 C -0.525 4.525 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.891 3.109 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.284 1.284 24 S 0.111 5.889 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.171 0.829 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.350 0.650 33 H 0.093 0.907 34 H 0.039 0.961 35 H 0.040 0.960 36 H 0.025 0.975 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.000 -2.040 -10.779 23.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.354 4.354 3 C -0.115 4.115 4 N -0.172 5.172 5 C -0.206 4.206 6 C 0.046 3.954 7 H 0.118 0.882 8 C -0.237 4.237 9 N -0.308 5.308 10 C -0.064 4.064 11 C -0.014 4.014 12 H 0.129 0.871 13 C -0.076 4.076 14 N -0.151 5.151 15 C -0.006 4.006 16 C -0.563 4.563 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.210 1.210 24 S 0.366 5.634 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.188 0.812 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.170 0.830 33 H 0.111 0.889 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.043 0.957 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.346 -1.635 -10.956 23.166 hybrid contribution 0.687 1.113 0.316 1.346 sum -19.659 -0.522 -10.639 22.359 Atomic orbital electron populations 1.20195 0.86981 1.03143 1.02865 1.25931 1.01436 0.95115 1.12959 1.21725 0.87083 0.99939 1.02754 1.66156 1.17219 1.18723 1.15056 1.27028 1.00119 0.91211 1.02276 1.20039 0.85502 0.97868 0.91945 0.88160 1.22486 1.01604 1.03256 0.96367 1.60436 1.24017 1.06714 1.39667 1.22175 0.89867 0.97028 0.97284 1.19314 0.98390 0.88050 0.95694 0.87110 1.29259 0.92117 0.93949 0.92316 1.81012 1.10589 1.12211 1.11322 1.19168 0.90860 0.94521 0.96045 1.21188 1.15293 1.01531 1.18318 0.92436 1.24949 0.96903 0.94899 0.97240 1.69943 1.27374 1.14056 1.41690 0.86539 0.79561 0.80211 0.81806 1.19661 1.20831 1.21006 1.83903 0.98983 1.11615 1.68927 0.90620 0.91287 0.90420 0.81175 0.91538 0.91068 0.91830 0.83034 0.88884 0.94295 0.94175 0.95688 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.42 36.01 0.38 -0.08 16 2 C -0.23 -2.23 6.60 -35.92 -0.24 -2.47 16 3 C 0.04 0.40 11.25 -19.18 -0.22 0.19 16 4 N -0.46 -6.20 10.50 -11.86 -0.12 -6.32 16 5 C 0.07 0.89 6.25 -13.45 -0.08 0.80 16 6 C 0.16 1.86 3.09 -68.86 -0.21 1.65 16 7 H 0.10 1.01 7.80 -51.93 -0.40 0.60 16 8 C -0.18 -1.86 9.14 37.16 0.34 -1.52 16 9 N -0.68 -9.39 6.20 -107.95 -0.67 -10.05 16 10 C 0.07 0.96 4.92 -3.83 -0.02 0.94 16 11 C 0.01 0.14 2.42 -93.41 -0.23 -0.09 16 12 H 0.11 2.01 8.14 -51.93 -0.42 1.58 16 13 C 0.24 4.92 12.97 -20.78 -0.27 4.65 16 14 N -0.47 -10.50 18.53 42.13 0.78 -9.72 16 15 C 0.03 0.75 4.42 -27.88 -0.12 0.63 16 16 C -0.53 -14.02 8.60 -34.44 -0.30 -14.31 16 17 H 0.06 1.54 7.59 -52.48 -0.40 1.14 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -25.48 13.29 55.43 0.74 -24.75 16 20 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 S 0.11 1.09 23.18 -107.50 -2.49 -1.40 16 25 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.17 1.53 8.06 -52.49 -0.42 1.10 16 29 H 0.07 0.78 8.13 -51.92 -0.42 0.35 16 30 H 0.07 0.73 7.45 -51.93 -0.39 0.35 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.35 5.29 7.55 -39.29 -0.30 5.00 16 33 H 0.09 1.23 8.05 -51.93 -0.42 0.81 16 34 H 0.04 0.55 7.43 -51.93 -0.39 0.16 16 35 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 335.47 15.07 5.06 5.06 Total: -1.00 -30.94 335.47 -8.03 -38.97 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -5.23 Total: -0.20 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -1.07 Total: -7.99 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: 0.72 Total: -50.85 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.49 Total: -1.40 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.94 -8.03 -38.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267480019.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.946 kcal (2) G-P(sol) polarization free energy of solvation -30.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds