Wall clock time and date at job start Tue Mar 31 2020 00:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33638 * 126.03854 * 2 1 4 4 N 1.31785 * 114.50130 * 179.78985 * 3 2 1 5 5 C 1.29031 * 117.11884 * 0.51781 * 4 3 2 6 6 C 1.50705 * 124.90906 * 179.67999 * 5 4 3 7 7 H 1.09003 * 109.46403 * 165.04227 * 6 5 4 8 8 C 1.53001 * 109.47143 * 285.03637 * 6 5 4 9 9 N 1.46895 * 109.47349 * 45.04159 * 6 5 4 10 10 C 1.46903 * 111.00159 * 154.99599 * 9 6 5 11 11 C 1.52994 * 109.47054 * 179.97438 * 10 9 6 12 12 H 1.09001 * 109.47093 * 55.00626 * 11 10 9 13 13 C 1.47197 * 109.47359 * 294.99896 * 11 10 9 14 14 N 7.94928 * 162.74662 * 33.27170 * 2 1 3 15 15 C 1.53009 * 109.46703 * 175.00000 * 11 10 9 16 16 C 1.50698 * 109.46825 * 184.99823 * 15 11 10 17 17 H 1.08003 * 120.00543 * 0.02562 * 16 15 11 18 18 C 1.37875 * 119.99835 * 180.02562 * 16 15 11 19 19 N 1.31510 * 120.00066 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99955 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47199 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47005 * 120.00085 * 20 18 16 23 23 H 1.48499 * 109.46910 * 239.99944 * 20 18 16 24 24 S 1.70976 * 110.17099 * 359.71846 * 5 4 3 25 25 H 1.09002 * 109.47152 * 269.69193 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.69293 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.69274 * 1 2 3 28 28 H 1.08000 * 122.74772 * 359.97438 * 3 2 1 29 29 H 1.09008 * 109.46882 * 60.00500 * 8 6 5 30 30 H 1.09000 * 109.47023 * 179.97438 * 8 6 5 31 31 H 1.08994 * 109.47613 * 300.00947 * 8 6 5 32 32 H 1.00895 * 111.00050 * 278.95176 * 9 6 5 33 33 H 1.08997 * 109.46742 * 300.00693 * 10 9 6 34 34 H 1.09007 * 109.46722 * 60.00101 * 10 9 6 35 35 H 1.08998 * 109.47361 * 304.99988 * 15 11 10 36 36 H 1.08998 * 109.47127 * 65.00310 * 15 11 10 37 37 H 0.97003 * 120.00221 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0806 0.0000 4 7 3.5845 0.8171 0.0044 5 6 3.9311 -0.4258 -0.0023 6 6 5.3532 -0.9245 -0.0057 7 1 5.3675 -1.9831 0.2540 8 6 5.9575 -0.7329 -1.3982 9 7 6.1398 -0.1683 0.9777 10 6 7.2949 -0.9490 1.4406 11 6 8.0882 -0.1300 2.4608 12 1 7.4260 0.1860 3.2669 13 6 8.6587 1.0558 1.8011 14 7 9.0986 1.9713 1.2935 15 6 9.2179 -0.9872 3.0352 16 6 9.9223 -0.2237 4.1270 17 1 9.5966 0.7730 4.3857 18 6 10.9827 -0.7977 4.7957 19 7 11.3791 -2.0115 4.4811 20 14 11.8554 0.1484 6.1496 21 1 11.2205 1.4811 6.3105 22 1 11.7532 -0.6053 7.4250 23 1 13.2858 0.3210 5.7898 24 16 2.5436 -1.4248 -0.0077 25 1 -0.3633 -0.0055 1.0277 26 1 -0.3633 -0.8872 -0.5186 27 1 -0.3633 0.8928 -0.5091 28 1 1.9025 2.0874 -0.0004 29 1 5.9431 0.3256 -1.6580 30 1 6.9862 -1.0932 -1.4006 31 1 5.3739 -1.2940 -2.1280 32 1 6.4319 0.7207 0.6005 33 1 6.9471 -1.8713 1.9058 34 1 7.9348 -1.1892 0.5915 35 1 8.8030 -1.9079 3.4452 36 1 9.9283 -1.2292 2.2447 37 1 12.1254 -2.4152 4.9513 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267480019.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:46 Heat of formation + Delta-G solvation = 32.434191 kcal Electronic energy + Delta-G solvation = -18463.880877 eV Core-core repulsion = 15559.570037 eV Total energy + Delta-G solvation = -2904.310840 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.72081 -39.04275 -37.20872 -35.61136 -34.15862 -33.04088 -30.91038 -27.99317 -27.85388 -25.50457 -24.46981 -23.57439 -22.98331 -19.82122 -19.13301 -18.47948 -18.22794 -16.89925 -16.66891 -15.97358 -15.91675 -15.52040 -15.03880 -14.86053 -14.52528 -14.31857 -14.12278 -13.90610 -13.81290 -13.56576 -13.38145 -13.33559 -13.07037 -12.89702 -12.68195 -12.50662 -12.36464 -12.27485 -12.03588 -11.99403 -11.40594 -11.17091 -10.54846 -10.47504 -10.08835 -9.67166 -9.39688 -8.19398 -6.26938 -0.18737 0.43315 0.83275 1.38708 1.41856 1.52260 1.93560 1.95325 1.98300 2.41653 3.15706 3.17224 3.25116 3.29212 3.90035 4.04314 4.11110 4.23502 4.32916 4.33855 4.40377 4.62381 4.73875 4.75875 4.80148 4.94129 4.97803 4.98761 5.08308 5.16399 5.36605 5.48454 5.64021 5.80076 5.94138 6.21536 6.25501 6.75631 6.87847 6.92779 7.41428 8.91586 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.029506 B = 0.003192 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.728615 B = 8770.487311 C = 8831.513735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.225 4.225 3 C 0.009 3.991 4 N -0.491 5.491 5 C 0.047 3.953 6 C 0.159 3.841 7 H 0.118 0.882 8 C -0.170 4.170 9 N -0.682 5.682 10 C 0.078 3.922 11 C 0.019 3.981 12 H 0.118 0.882 13 C 0.251 3.749 14 N -0.505 5.505 15 C 0.040 3.960 16 C -0.539 4.539 17 H 0.051 0.949 18 C 0.013 3.987 19 N -0.922 5.922 20 Si 0.947 3.053 21 H -0.272 1.272 22 H -0.272 1.272 23 H -0.284 1.284 24 S 0.143 5.857 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.184 0.816 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.340 0.660 33 H 0.112 0.888 34 H 0.044 0.956 35 H 0.039 0.961 36 H 0.004 0.996 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.725 -2.637 -10.773 25.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.346 4.346 3 C -0.141 4.141 4 N -0.205 5.205 5 C -0.232 4.232 6 C 0.046 3.954 7 H 0.136 0.864 8 C -0.231 4.231 9 N -0.313 5.313 10 C -0.052 4.052 11 C -0.003 4.003 12 H 0.136 0.864 13 C -0.065 4.065 14 N -0.183 5.183 15 C 0.001 3.999 16 C -0.577 4.577 17 H 0.069 0.931 18 C -0.186 4.186 19 N -0.562 5.562 20 Si 0.773 3.227 21 H -0.196 1.196 22 H -0.198 1.198 23 H -0.211 1.211 24 S 0.397 5.603 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.111 0.889 28 H 0.200 0.800 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.159 0.841 33 H 0.130 0.870 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.022 0.978 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.083 -2.237 -10.951 24.751 hybrid contribution 1.130 1.291 0.295 1.740 sum -20.954 -0.946 -10.656 23.527 Atomic orbital electron populations 1.20354 0.84563 1.04517 1.03857 1.26405 1.03015 0.94537 1.10637 1.21999 0.86757 1.01179 1.04210 1.66138 1.18694 1.19845 1.15800 1.27069 1.00991 0.91592 1.03530 1.20156 0.85163 0.98357 0.91734 0.86384 1.22415 1.01903 1.02405 0.96351 1.60403 1.23539 1.06487 1.40862 1.22042 0.89933 0.96765 0.96493 1.19234 0.97227 0.86996 0.96866 0.86428 1.29660 0.91394 0.93882 0.91605 1.81008 1.11426 1.13256 1.12582 1.18984 0.91552 0.94801 0.94548 1.21581 1.15544 1.01500 1.19092 0.93093 1.25676 0.97834 0.95751 0.99383 1.70024 1.28036 1.15226 1.42869 0.85670 0.78256 0.79057 0.79745 1.19624 1.19754 1.21051 1.83717 0.97626 1.10871 1.68049 0.89652 0.90058 0.88919 0.79954 0.93204 0.90939 0.90167 0.84115 0.86964 0.93798 0.94228 0.97756 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.42 71.24 0.74 0.03 16 2 C -0.22 -3.86 6.60 24.64 0.16 -3.70 16 3 C 0.01 0.19 11.25 83.66 0.94 1.13 16 4 N -0.49 -13.03 10.50 -191.44 -2.01 -15.04 16 5 C 0.05 1.08 6.25 88.52 0.55 1.63 16 6 C 0.16 3.48 3.09 44.17 0.14 3.62 16 7 H 0.12 2.11 7.80 -2.39 -0.02 2.09 16 8 C -0.17 -3.42 9.14 71.98 0.66 -2.76 16 9 N -0.68 -18.29 6.20 -495.44 -3.07 -21.36 16 10 C 0.08 2.15 4.92 86.30 0.42 2.57 16 11 C 0.02 0.68 2.42 -12.60 -0.03 0.65 16 12 H 0.12 4.15 8.14 -2.39 -0.02 4.13 16 13 C 0.25 10.26 12.97 89.45 1.16 11.42 16 14 N -0.51 -22.48 18.53 20.00 0.37 -22.11 16 15 C 0.04 1.83 4.42 29.85 0.13 1.96 16 16 C -0.54 -28.75 8.60 25.60 0.22 -28.53 16 17 H 0.05 2.73 7.59 -2.91 -0.02 2.71 16 18 C 0.01 0.69 5.46 84.65 0.46 1.15 16 19 N -0.92 -52.69 13.29 21.45 0.28 -52.41 16 20 Si 0.95 43.78 29.54 68.60 2.03 45.80 16 21 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 23 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 24 S 0.14 2.53 23.18 -56.49 -1.31 1.22 16 25 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.18 3.14 8.06 -2.91 -0.02 3.12 16 29 H 0.05 1.16 8.13 -2.38 -0.02 1.14 16 30 H 0.07 1.41 7.45 -2.39 -0.02 1.39 16 31 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.34 10.24 7.55 -89.70 -0.68 9.57 16 33 H 0.11 2.71 8.05 -2.39 -0.02 2.69 16 34 H 0.04 1.18 7.43 -2.38 -0.02 1.16 16 35 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 37 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -65.72 335.47 2.25 -63.47 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 0.40 Total: 11.25 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: 5.56 Total: -10.83 kcal Atomic # 7 Polarization: -106.49 SS G_CDS: -4.43 Total: -110.92 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -1.31 Total: 1.22 kcal Total: -65.72 2.25 -63.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267480019.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.906 kcal (2) G-P(sol) polarization free energy of solvation -65.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds