Wall clock time and date at job start Tue Mar 31 2020 00:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33638 * 126.03854 * 2 1 4 4 N 1.31785 * 114.50130 * 179.78985 * 3 2 1 5 5 C 1.29031 * 117.11884 * 0.51781 * 4 3 2 6 6 C 1.50703 * 124.90978 * 179.74811 * 5 4 3 7 7 H 1.09003 * 109.46711 * 194.95953 * 6 5 4 8 8 C 1.53002 * 109.46736 * 74.96269 * 6 5 4 9 9 N 1.46890 * 109.47688 * 314.96189 * 6 5 4 10 10 C 1.46900 * 111.00466 * 205.00037 * 9 6 5 11 11 C 1.52995 * 109.47379 * 179.97438 * 10 9 6 12 12 H 1.08995 * 109.47501 * 54.99961 * 11 10 9 13 13 C 1.47201 * 109.46982 * 294.99850 * 11 10 9 14 14 N 6.87665 * 138.10223 * 273.90323 * 2 1 3 15 15 C 1.52998 * 109.47212 * 174.99969 * 11 10 9 16 16 C 1.50699 * 109.47177 * 184.99877 * 15 11 10 17 17 H 1.07995 * 120.00026 * 359.97438 * 16 15 11 18 18 C 1.37884 * 119.99783 * 179.97438 * 16 15 11 19 19 N 1.31511 * 120.00048 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99833 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46938 * 60.00378 * 20 18 16 22 22 H 1.48496 * 109.47178 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47671 * 300.00603 * 20 18 16 24 24 S 1.70976 * 110.17099 * 359.71846 * 5 4 3 25 25 H 1.09002 * 109.47152 * 269.69193 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.69293 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.69274 * 1 2 3 28 28 H 1.08000 * 122.74772 * 359.97438 * 3 2 1 29 29 H 1.08994 * 109.47187 * 299.99604 * 8 6 5 30 30 H 1.08997 * 109.47131 * 60.00049 * 8 6 5 31 31 H 1.09008 * 109.46848 * 179.97438 * 8 6 5 32 32 H 1.00902 * 111.00224 * 81.04088 * 9 6 5 33 33 H 1.09003 * 109.46612 * 299.99981 * 10 9 6 34 34 H 1.09001 * 109.46881 * 59.99420 * 10 9 6 35 35 H 1.08998 * 109.47336 * 304.99854 * 15 11 10 36 36 H 1.09007 * 109.46995 * 64.99726 * 15 11 10 37 37 H 0.97003 * 120.00072 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0806 0.0000 4 7 3.5845 0.8171 0.0044 5 6 3.9311 -0.4258 -0.0023 6 6 5.3532 -0.9246 -0.0043 7 1 5.3676 -1.9802 -0.2754 8 6 5.9575 -0.7478 1.3902 9 7 6.1398 -0.1578 -0.9795 10 6 7.2949 -0.9334 -1.4507 11 6 8.0875 -0.1041 -2.4630 12 1 8.3593 0.8521 -2.0160 13 6 7.2618 0.1304 -3.6589 14 7 6.6256 0.3126 -4.5816 15 6 9.3567 -0.8606 -2.8599 16 6 10.1974 0.0068 -3.7610 17 1 9.8600 0.9982 -4.0246 18 6 11.3975 -0.4655 -4.2489 19 7 11.8081 -1.6731 -3.9282 20 14 12.4393 0.6093 -5.3664 21 1 12.8092 1.8561 -4.6496 22 1 13.6712 -0.1250 -5.7515 23 1 11.6653 0.9510 -6.5868 24 16 2.5436 -1.4248 -0.0077 25 1 -0.3633 -0.0055 1.0277 26 1 -0.3633 -0.8872 -0.5186 27 1 -0.3633 0.8928 -0.5091 28 1 1.9025 2.0874 -0.0004 29 1 5.9431 0.3078 1.6613 30 1 5.3739 -1.3168 2.1139 31 1 6.9860 -1.1090 1.3889 32 1 6.4319 0.7272 -0.5928 33 1 7.9348 -1.1828 -0.6043 34 1 6.9471 -1.8507 -1.9259 35 1 9.9249 -1.1121 -1.9643 36 1 9.0848 -1.7754 -3.3865 37 1 12.6526 -2.0052 -4.2711 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267480020.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:49 Heat of formation + Delta-G solvation = 52.169728 kcal Electronic energy + Delta-G solvation = -18474.116695 eV Core-core repulsion = 15570.661652 eV Total energy + Delta-G solvation = -2903.455043 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.86688 -37.66162 -35.80657 -33.78757 -32.81249 -31.86153 -29.62974 -27.17864 -26.22741 -24.69079 -23.05244 -22.14588 -21.71945 -19.00401 -18.27696 -16.97601 -16.38660 -15.63961 -15.14799 -14.90350 -14.55701 -14.48022 -14.17871 -13.50813 -13.45708 -13.18816 -13.01240 -12.82326 -12.56918 -12.27405 -12.06903 -11.92655 -11.63050 -11.47635 -11.31950 -11.23269 -11.04241 -10.67961 -10.55100 -10.22923 -9.68667 -9.51576 -9.29940 -9.24107 -8.85638 -8.45183 -8.32883 -6.09109 -4.12091 0.61868 1.21185 1.64267 2.79257 3.32075 3.36160 3.40302 3.77579 3.87704 4.06169 4.26586 4.43595 4.72636 4.76147 4.91323 4.92240 4.95852 5.13731 5.18731 5.29105 5.48496 5.50330 5.54261 5.57129 5.66077 5.77452 5.92030 6.03129 6.14523 6.37203 6.49584 7.00270 7.41915 7.46818 7.53542 7.73833 7.86246 8.23824 8.62313 8.92478 9.53328 11.01758 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.034600 B = 0.003234 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.050136 B = 8655.013333 C = 9007.637363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.233 4.233 3 C 0.036 3.964 4 N -0.458 5.458 5 C 0.073 3.927 6 C 0.162 3.838 7 H 0.097 0.903 8 C -0.175 4.175 9 N -0.678 5.678 10 C 0.066 3.934 11 C 0.010 3.990 12 H 0.100 0.900 13 C 0.255 3.745 14 N -0.479 5.479 15 C 0.033 3.967 16 C -0.527 4.527 17 H 0.056 0.944 18 C 0.063 3.937 19 N -0.892 5.892 20 Si 0.892 3.108 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.277 1.277 24 S 0.108 5.892 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.171 0.829 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.352 0.648 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.038 0.962 36 H 0.026 0.974 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.203 -0.280 14.389 23.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.355 4.355 3 C -0.115 4.115 4 N -0.171 5.171 5 C -0.206 4.206 6 C 0.047 3.953 7 H 0.115 0.885 8 C -0.236 4.236 9 N -0.310 5.310 10 C -0.064 4.064 11 C -0.012 4.012 12 H 0.118 0.882 13 C -0.062 4.062 14 N -0.155 5.155 15 C -0.006 4.006 16 C -0.565 4.565 17 H 0.075 0.925 18 C -0.139 4.139 19 N -0.531 5.531 20 Si 0.719 3.281 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.202 1.202 24 S 0.363 5.637 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.188 0.812 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.172 0.828 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.056 0.944 36 H 0.045 0.955 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.153 -0.976 12.418 22.847 hybrid contribution 1.123 1.444 0.376 1.868 sum -18.030 0.468 12.794 22.113 Atomic orbital electron populations 1.20192 0.86995 1.03330 1.02661 1.25920 1.01437 0.95094 1.13007 1.21720 0.87124 0.99919 1.02728 1.66144 1.17177 1.18647 1.15113 1.27047 1.00149 0.91218 1.02202 1.20020 0.85477 0.97687 0.92071 0.88451 1.22479 1.01646 1.03283 0.96158 1.60357 1.24152 1.06821 1.39673 1.22160 0.90168 0.96892 0.97194 1.19204 0.93830 1.01550 0.86594 0.88206 1.28816 0.91531 0.92044 0.93840 1.80958 1.12431 1.09931 1.12208 1.19160 0.88280 0.95428 0.97732 1.21112 1.04384 1.01186 1.29810 0.92536 1.24946 0.97693 0.95032 0.96261 1.69925 1.21823 1.16448 1.44890 0.86653 0.79597 0.80546 0.81282 1.20048 1.21201 1.20222 1.83917 0.99118 1.11738 1.68927 0.90781 0.91235 0.90336 0.81167 0.91384 0.91990 0.90888 0.82758 0.92837 0.90386 0.94398 0.95546 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.42 36.01 0.38 -0.11 16 2 C -0.23 -2.36 6.60 -35.92 -0.24 -2.60 16 3 C 0.04 0.42 11.25 -19.18 -0.22 0.20 16 4 N -0.46 -6.22 10.50 -11.86 -0.12 -6.34 16 5 C 0.07 0.91 6.25 -13.45 -0.08 0.83 16 6 C 0.16 1.84 3.09 -68.87 -0.21 1.63 16 7 H 0.10 1.02 7.80 -51.93 -0.40 0.62 16 8 C -0.18 -1.64 9.14 37.16 0.34 -1.30 16 9 N -0.68 -9.17 5.90 -107.96 -0.64 -9.81 16 10 C 0.07 0.94 4.85 -3.83 -0.02 0.92 16 11 C 0.01 0.19 2.35 -93.41 -0.22 -0.03 16 12 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 13 C 0.25 5.45 13.67 -20.78 -0.28 5.17 16 14 N -0.48 -11.24 18.53 42.13 0.78 -10.46 16 15 C 0.03 0.75 4.42 -27.88 -0.12 0.62 16 16 C -0.53 -14.04 8.60 -34.44 -0.30 -14.34 16 17 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -25.48 13.29 55.43 0.74 -24.75 16 20 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 S 0.11 1.14 23.18 -107.50 -2.49 -1.36 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 29 H 0.07 0.68 8.13 -51.93 -0.42 0.25 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.63 7.45 -51.92 -0.39 0.25 16 32 H 0.35 4.60 8.47 -39.29 -0.33 4.26 16 33 H 0.05 0.67 7.44 -51.93 -0.39 0.28 16 34 H 0.08 1.14 8.05 -51.93 -0.42 0.73 16 35 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.03 0.65 8.14 -51.92 -0.42 0.23 16 37 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 336.65 15.07 5.07 5.07 Total: -1.00 -31.82 336.65 -8.02 -39.85 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -5.27 Total: -1.20 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -1.07 Total: -7.38 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: 0.76 Total: -51.35 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -2.49 Total: -1.36 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.82 -8.02 -39.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267480020.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.016 kcal (2) G-P(sol) polarization free energy of solvation -31.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds