Wall clock time and date at job start Tue Mar 31 2020 00:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33638 * 126.03854 * 2 1 4 4 N 1.31785 * 114.50130 * 179.78985 * 3 2 1 5 5 C 1.29031 * 117.11884 * 0.51781 * 4 3 2 6 6 C 1.50703 * 124.90978 * 179.74811 * 5 4 3 7 7 H 1.09003 * 109.46711 * 194.95953 * 6 5 4 8 8 C 1.53002 * 109.46736 * 74.96269 * 6 5 4 9 9 N 1.46890 * 109.47688 * 314.96189 * 6 5 4 10 10 C 1.46900 * 111.00466 * 205.00037 * 9 6 5 11 11 C 1.52995 * 109.47379 * 179.97438 * 10 9 6 12 12 H 1.08995 * 109.47501 * 54.99961 * 11 10 9 13 13 C 1.47201 * 109.46982 * 294.99850 * 11 10 9 14 14 N 6.87665 * 138.10223 * 273.90323 * 2 1 3 15 15 C 1.52998 * 109.47212 * 174.99969 * 11 10 9 16 16 C 1.50699 * 109.47177 * 184.99877 * 15 11 10 17 17 H 1.07995 * 120.00026 * 359.97438 * 16 15 11 18 18 C 1.37884 * 119.99783 * 179.97438 * 16 15 11 19 19 N 1.31511 * 120.00048 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99833 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46938 * 60.00378 * 20 18 16 22 22 H 1.48496 * 109.47178 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47671 * 300.00603 * 20 18 16 24 24 S 1.70976 * 110.17099 * 359.71846 * 5 4 3 25 25 H 1.09002 * 109.47152 * 269.69193 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.69293 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.69274 * 1 2 3 28 28 H 1.08000 * 122.74772 * 359.97438 * 3 2 1 29 29 H 1.08994 * 109.47187 * 299.99604 * 8 6 5 30 30 H 1.08997 * 109.47131 * 60.00049 * 8 6 5 31 31 H 1.09008 * 109.46848 * 179.97438 * 8 6 5 32 32 H 1.00902 * 111.00224 * 81.04088 * 9 6 5 33 33 H 1.09003 * 109.46612 * 299.99981 * 10 9 6 34 34 H 1.09001 * 109.46881 * 59.99420 * 10 9 6 35 35 H 1.08998 * 109.47336 * 304.99854 * 15 11 10 36 36 H 1.09007 * 109.46995 * 64.99726 * 15 11 10 37 37 H 0.97003 * 120.00072 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0806 0.0000 4 7 3.5845 0.8171 0.0044 5 6 3.9311 -0.4258 -0.0023 6 6 5.3532 -0.9246 -0.0043 7 1 5.3676 -1.9802 -0.2754 8 6 5.9575 -0.7478 1.3902 9 7 6.1398 -0.1578 -0.9795 10 6 7.2949 -0.9334 -1.4507 11 6 8.0875 -0.1041 -2.4630 12 1 8.3593 0.8521 -2.0160 13 6 7.2618 0.1304 -3.6589 14 7 6.6256 0.3126 -4.5816 15 6 9.3567 -0.8606 -2.8599 16 6 10.1974 0.0068 -3.7610 17 1 9.8600 0.9982 -4.0246 18 6 11.3975 -0.4655 -4.2489 19 7 11.8081 -1.6731 -3.9282 20 14 12.4393 0.6093 -5.3664 21 1 12.8092 1.8561 -4.6496 22 1 13.6712 -0.1250 -5.7515 23 1 11.6653 0.9510 -6.5868 24 16 2.5436 -1.4248 -0.0077 25 1 -0.3633 -0.0055 1.0277 26 1 -0.3633 -0.8872 -0.5186 27 1 -0.3633 0.8928 -0.5091 28 1 1.9025 2.0874 -0.0004 29 1 5.9431 0.3078 1.6613 30 1 5.3739 -1.3168 2.1139 31 1 6.9860 -1.1090 1.3889 32 1 6.4319 0.7272 -0.5928 33 1 7.9348 -1.1828 -0.6043 34 1 6.9471 -1.8507 -1.9259 35 1 9.9249 -1.1121 -1.9643 36 1 9.0848 -1.7754 -3.3865 37 1 12.6526 -2.0052 -4.2711 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267480020.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:48 Heat of formation + Delta-G solvation = 31.872870 kcal Electronic energy + Delta-G solvation = -18474.996833 eV Core-core repulsion = 15570.661652 eV Total energy + Delta-G solvation = -2904.335181 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.72297 -38.93473 -37.20295 -35.55375 -34.15061 -33.04322 -30.87371 -27.94985 -27.86737 -25.50618 -24.46118 -23.47891 -23.00956 -19.87345 -19.19435 -18.49827 -18.25830 -16.68649 -16.57014 -15.96498 -15.80889 -15.51055 -15.28621 -14.74610 -14.54090 -14.33242 -14.08517 -13.81409 -13.71926 -13.58214 -13.42840 -13.19628 -13.02438 -12.85005 -12.75150 -12.46563 -12.36996 -12.28153 -12.06093 -11.89326 -11.40089 -11.16290 -10.53722 -10.50631 -10.12087 -9.67940 -9.32199 -8.18533 -6.26205 -0.20742 0.41214 0.81274 1.41232 1.43141 1.49994 1.93053 2.07969 2.15128 2.42334 3.16495 3.19672 3.28384 3.38588 3.93243 4.06758 4.10073 4.28087 4.30063 4.36010 4.42589 4.72180 4.72310 4.72678 4.85675 4.91211 4.96706 5.02004 5.07513 5.24103 5.36397 5.48740 5.64532 5.80432 5.97197 6.22777 6.45864 6.84299 6.89332 6.94401 7.42045 8.92064 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.034600 B = 0.003234 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.050136 B = 8655.013333 C = 9007.637363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.226 4.226 3 C 0.009 3.991 4 N -0.485 5.485 5 C 0.049 3.951 6 C 0.161 3.839 7 H 0.105 0.895 8 C -0.167 4.167 9 N -0.691 5.691 10 C 0.079 3.921 11 C 0.020 3.980 12 H 0.118 0.882 13 C 0.266 3.734 14 N -0.519 5.519 15 C 0.040 3.960 16 C -0.541 4.541 17 H 0.052 0.948 18 C 0.013 3.987 19 N -0.922 5.922 20 Si 0.946 3.054 21 H -0.263 1.263 22 H -0.281 1.281 23 H -0.283 1.283 24 S 0.124 5.876 25 H 0.090 0.910 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.186 0.814 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.354 0.646 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.040 0.960 36 H 0.002 0.998 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.997 -0.077 15.481 24.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.348 4.348 3 C -0.141 4.141 4 N -0.199 5.199 5 C -0.229 4.229 6 C 0.047 3.953 7 H 0.123 0.877 8 C -0.227 4.227 9 N -0.324 5.324 10 C -0.051 4.051 11 C -0.002 4.002 12 H 0.136 0.864 13 C -0.050 4.050 14 N -0.197 5.197 15 C 0.001 3.999 16 C -0.579 4.579 17 H 0.070 0.930 18 C -0.186 4.186 19 N -0.562 5.562 20 Si 0.772 3.228 21 H -0.188 1.188 22 H -0.206 1.206 23 H -0.209 1.209 24 S 0.379 5.621 25 H 0.109 0.891 26 H 0.095 0.905 27 H 0.109 0.891 28 H 0.202 0.798 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.175 0.825 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.020 0.980 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.953 -0.764 13.523 24.116 hybrid contribution 1.280 1.372 0.046 1.877 sum -18.673 0.608 13.569 23.090 Atomic orbital electron populations 1.20347 0.84618 1.04291 1.04003 1.26381 1.02991 0.94427 1.10959 1.22035 0.86883 1.01151 1.03995 1.66132 1.18435 1.19511 1.15778 1.27211 1.01071 0.91496 1.03140 1.20111 0.84949 0.97617 0.92577 0.87688 1.22396 1.02155 1.03028 0.95101 1.60262 1.23823 1.07166 1.41101 1.21967 0.90578 0.95774 0.96784 1.19210 0.92121 1.02497 0.86397 0.86397 1.29431 0.90935 0.90841 0.93827 1.80953 1.13937 1.11412 1.13387 1.18978 0.89797 0.94298 0.96825 1.21537 1.04849 1.01434 1.30065 0.92998 1.25677 0.99068 0.96167 0.97702 1.70012 1.22324 1.17730 1.46113 0.85789 0.78172 0.79526 0.79327 1.18776 1.20641 1.20897 1.83798 0.98378 1.11524 1.68427 0.89121 0.90515 0.89092 0.79753 0.92136 0.90871 0.89958 0.82545 0.90321 0.90743 0.94174 0.97972 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 10.42 71.24 0.74 -0.07 16 2 C -0.23 -4.22 6.60 24.64 0.16 -4.06 16 3 C 0.01 0.21 11.25 83.66 0.94 1.15 16 4 N -0.48 -12.85 10.50 -191.44 -2.01 -14.87 16 5 C 0.05 1.18 6.25 88.52 0.55 1.74 16 6 C 0.16 3.44 3.09 44.17 0.14 3.58 16 7 H 0.11 2.04 7.80 -2.39 -0.02 2.02 16 8 C -0.17 -2.81 9.14 71.98 0.66 -2.15 16 9 N -0.69 -17.80 5.90 -495.46 -2.92 -20.73 16 10 C 0.08 2.13 4.85 86.30 0.42 2.55 16 11 C 0.02 0.70 2.35 -12.60 -0.03 0.67 16 12 H 0.12 3.82 8.14 -2.39 -0.02 3.80 16 13 C 0.27 11.29 13.67 89.45 1.22 12.51 16 14 N -0.52 -24.46 18.53 20.00 0.37 -24.09 16 15 C 0.04 1.81 4.42 29.85 0.13 1.94 16 16 C -0.54 -28.67 8.60 25.60 0.22 -28.45 16 17 H 0.05 2.74 7.59 -2.91 -0.02 2.72 16 18 C 0.01 0.71 5.46 84.66 0.46 1.17 16 19 N -0.92 -52.67 13.29 21.45 0.28 -52.39 16 20 Si 0.95 43.60 29.54 68.60 2.03 45.63 16 21 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 24 S 0.12 2.44 23.18 -56.49 -1.31 1.13 16 25 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.08 0.76 8.14 -2.39 -0.02 0.75 16 27 H 0.09 0.81 8.14 -2.38 -0.02 0.80 16 28 H 0.19 3.25 8.06 -2.91 -0.02 3.23 16 29 H 0.06 1.12 8.13 -2.39 -0.02 1.10 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.23 7.45 -2.38 -0.02 1.21 16 32 H 0.35 8.80 8.47 -89.69 -0.76 8.04 16 33 H 0.08 1.76 7.44 -2.39 -0.02 1.74 16 34 H 0.07 2.09 8.05 -2.39 -0.02 2.07 16 35 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 37 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -67.67 336.65 2.37 -65.30 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 0.32 Total: 9.43 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: 5.62 Total: -9.42 kcal Atomic # 7 Polarization: -107.79 SS G_CDS: -4.28 Total: -112.07 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -1.31 Total: 1.13 kcal Total: -67.67 2.37 -65.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267480020.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.175 kcal (2) G-P(sol) polarization free energy of solvation -67.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds