Wall clock time and date at job start Tue Mar 31 2020 00:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33641 * 126.03506 * 2 1 4 4 N 1.31780 * 114.49976 * 179.78637 * 3 2 1 5 5 C 1.29021 * 117.12396 * 0.48061 * 4 3 2 6 6 C 1.50708 * 124.91519 * 179.81108 * 5 4 3 7 7 H 1.09003 * 109.47038 * 194.69315 * 6 5 4 8 8 C 1.52998 * 109.47160 * 74.69188 * 6 5 4 9 9 N 1.46893 * 109.46798 * 314.69217 * 6 5 4 10 10 C 1.46910 * 110.99761 * 204.99886 * 9 6 5 11 11 C 1.53002 * 109.46906 * 180.02562 * 10 9 6 12 12 H 1.08996 * 109.47407 * 304.99784 * 11 10 9 13 13 C 1.47206 * 109.47021 * 65.00197 * 11 10 9 14 14 N 7.94924 * 162.72548 * 326.98651 * 2 1 3 15 15 C 1.52997 * 109.46817 * 185.00004 * 11 10 9 16 16 C 1.50698 * 109.46933 * 175.00167 * 15 11 10 17 17 H 1.08003 * 120.00121 * 0.02562 * 16 15 11 18 18 C 1.37882 * 119.99840 * 179.97438 * 16 15 11 19 19 N 1.31510 * 120.00071 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99922 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47013 * 60.00187 * 20 18 16 22 22 H 1.48503 * 109.47171 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47177 * 300.00419 * 20 18 16 24 24 S 1.70970 * 110.16669 * 359.54206 * 5 4 3 25 25 H 1.09001 * 109.47026 * 269.95289 * 1 2 3 26 26 H 1.08995 * 109.47503 * 29.96038 * 1 2 3 27 27 H 1.09005 * 109.46430 * 149.95459 * 1 2 3 28 28 H 1.08008 * 122.74832 * 0.04467 * 3 2 1 29 29 H 1.09002 * 109.47595 * 300.00416 * 8 6 5 30 30 H 1.09008 * 109.46957 * 60.00061 * 8 6 5 31 31 H 1.08998 * 109.47237 * 180.02562 * 8 6 5 32 32 H 1.00897 * 111.00751 * 328.95660 * 9 6 5 33 33 H 1.08997 * 109.46998 * 60.00442 * 10 9 6 34 34 H 1.08997 * 109.46873 * 300.00074 * 10 9 6 35 35 H 1.08998 * 109.47192 * 294.99969 * 15 11 10 36 36 H 1.09000 * 109.47325 * 55.00085 * 15 11 10 37 37 H 0.97004 * 119.99924 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0807 0.0000 4 7 3.5844 0.8172 0.0045 5 6 3.9311 -0.4255 -0.0014 6 6 5.3533 -0.9243 -0.0018 7 1 5.3676 -1.9812 -0.2679 8 6 5.9585 -0.7408 1.3914 9 7 6.1391 -0.1621 -0.9813 10 6 7.2940 -0.9400 -1.4495 11 6 8.0866 -0.1149 -2.4653 12 1 7.4240 0.2058 -3.2691 13 6 8.6575 1.0671 -1.7989 14 7 9.0977 1.9794 -1.2861 15 6 9.2160 -0.9685 -3.0455 16 6 9.9197 -0.1985 -4.1332 17 1 9.5941 0.8000 -4.3852 18 6 10.9797 -0.7684 -4.8060 19 7 11.3765 -1.9840 -4.4988 20 14 11.8515 0.1857 -6.1548 21 1 12.4164 1.4375 -5.5897 22 1 12.9478 -0.6427 -6.7178 23 1 10.8828 0.5208 -7.2294 24 16 2.5437 -1.4246 -0.0011 25 1 -0.3633 -0.0008 1.0277 26 1 -0.3634 0.8903 -0.5132 27 1 -0.3632 -0.8897 -0.5146 28 1 1.9023 2.0876 0.0007 29 1 5.9442 0.3161 1.6575 30 1 5.3753 -1.3064 2.1182 31 1 6.9872 -1.1011 1.3910 32 1 5.5637 0.1328 -1.7559 33 1 6.9461 -1.8595 -1.9201 34 1 7.9345 -1.1852 -0.6022 35 1 9.9269 -1.2151 -2.2569 36 1 8.8009 -1.8868 -3.4607 37 1 12.1220 -2.3851 -4.9724 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267480023.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:50 Heat of formation + Delta-G solvation = 33.955415 kcal Electronic energy + Delta-G solvation = -18460.422149 eV Core-core repulsion = 15556.177273 eV Total energy + Delta-G solvation = -2904.244875 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.80198 -38.90021 -37.13907 -35.55080 -34.16473 -33.01876 -31.00942 -28.18952 -27.80406 -25.52986 -24.47929 -23.47605 -22.74652 -19.91890 -19.18174 -18.52255 -18.31659 -16.74232 -16.56118 -16.07713 -15.97537 -15.54483 -15.21406 -14.86055 -14.46701 -14.20013 -14.08418 -13.79389 -13.66704 -13.52537 -13.43666 -13.25710 -13.02060 -12.85000 -12.78656 -12.46455 -12.35422 -12.24428 -12.07539 -11.86600 -11.39883 -11.16645 -10.54060 -10.49419 -10.15166 -9.70227 -9.37369 -8.18755 -6.26577 -0.27489 0.36554 0.76857 1.41137 1.42985 1.49951 1.88744 2.09360 2.16766 2.42156 3.10524 3.16521 3.18527 3.37451 3.91059 4.05500 4.11792 4.29415 4.33884 4.37722 4.41935 4.71306 4.73965 4.74718 4.86016 4.91086 4.92080 5.03959 5.07758 5.27242 5.35296 5.47981 5.63780 5.80008 5.97077 6.22258 6.38897 6.84212 6.87044 6.95366 7.41693 8.91881 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.029575 B = 0.003192 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.525061 B = 8770.718883 C = 8828.934595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.217 4.217 3 C 0.007 3.993 4 N -0.480 5.480 5 C 0.022 3.978 6 C 0.166 3.834 7 H 0.085 0.915 8 C -0.131 4.131 9 N -0.685 5.685 10 C 0.076 3.924 11 C 0.021 3.979 12 H 0.116 0.884 13 C 0.266 3.734 14 N -0.516 5.516 15 C 0.040 3.960 16 C -0.541 4.541 17 H 0.052 0.948 18 C 0.013 3.987 19 N -0.922 5.922 20 Si 0.946 3.054 21 H -0.283 1.283 22 H -0.281 1.281 23 H -0.263 1.263 24 S 0.147 5.853 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.185 0.815 29 H 0.045 0.955 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.348 0.652 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.003 0.997 36 H 0.039 0.961 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.184 -3.253 9.156 26.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.338 4.338 3 C -0.143 4.143 4 N -0.194 5.194 5 C -0.255 4.255 6 C 0.053 3.947 7 H 0.103 0.897 8 C -0.190 4.190 9 N -0.318 5.318 10 C -0.054 4.054 11 C -0.001 4.001 12 H 0.134 0.866 13 C -0.051 4.051 14 N -0.193 5.193 15 C 0.001 3.999 16 C -0.579 4.579 17 H 0.070 0.930 18 C -0.186 4.186 19 N -0.562 5.562 20 Si 0.772 3.228 21 H -0.208 1.208 22 H -0.206 1.206 23 H -0.188 1.188 24 S 0.402 5.598 25 H 0.107 0.893 26 H 0.111 0.889 27 H 0.099 0.901 28 H 0.202 0.798 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.167 0.833 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.021 0.979 36 H 0.057 0.943 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.785 -2.349 10.364 25.141 hybrid contribution 0.157 0.602 -1.479 1.605 sum -22.628 -1.747 8.884 24.372 Atomic orbital electron populations 1.20383 0.84439 1.04595 1.04038 1.26478 1.03105 0.94501 1.09754 1.22052 0.86604 1.01294 1.04355 1.66191 1.18655 1.19654 1.14890 1.27097 1.01074 0.91779 1.05594 1.20142 0.83615 0.95880 0.95036 0.89741 1.21757 1.01175 1.01988 0.94081 1.60471 1.10731 1.41865 1.18776 1.22025 0.91637 0.94518 0.97209 1.19176 0.97517 0.87303 0.96131 0.86650 1.29351 0.90870 0.93606 0.91237 1.80950 1.12206 1.13569 1.12619 1.18977 0.91690 0.94752 0.94485 1.21535 1.15756 1.01351 1.19272 0.92984 1.25683 0.97776 0.95764 0.99397 1.70014 1.28062 1.15268 1.42842 0.85781 0.78589 0.78423 0.79978 1.20847 1.20612 1.18791 1.83798 0.97527 1.10747 1.67743 0.89290 0.88880 0.90090 0.79771 0.93597 0.90781 0.91474 0.83311 0.90728 0.90395 0.97872 0.94325 0.92681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.42 71.24 0.74 0.11 16 2 C -0.22 -3.42 6.60 24.64 0.16 -3.26 16 3 C 0.01 0.14 11.25 83.66 0.94 1.08 16 4 N -0.48 -12.31 10.51 -191.44 -2.01 -14.33 16 5 C 0.02 0.49 5.90 88.52 0.52 1.02 16 6 C 0.17 3.68 3.11 44.17 0.14 3.81 16 7 H 0.08 1.52 7.80 -2.39 -0.02 1.51 16 8 C -0.13 -2.93 9.40 71.98 0.68 -2.26 16 9 N -0.68 -18.21 5.98 -495.43 -2.96 -21.17 16 10 C 0.08 2.12 4.85 86.30 0.42 2.54 16 11 C 0.02 0.75 2.35 -12.60 -0.03 0.72 16 12 H 0.12 3.82 8.14 -2.39 -0.02 3.80 16 13 C 0.27 11.34 13.67 89.45 1.22 12.57 16 14 N -0.52 -24.33 18.53 20.00 0.37 -23.96 16 15 C 0.04 1.82 4.42 29.85 0.13 1.96 16 16 C -0.54 -28.84 8.60 25.60 0.22 -28.62 16 17 H 0.05 2.76 7.59 -2.91 -0.02 2.74 16 18 C 0.01 0.71 5.46 84.66 0.46 1.17 16 19 N -0.92 -52.85 13.29 21.45 0.28 -52.57 16 20 Si 0.95 43.70 29.54 68.60 2.03 45.73 16 21 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 24 S 0.15 2.42 23.18 -56.49 -1.31 1.11 16 25 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 28 H 0.19 2.97 8.06 -2.91 -0.02 2.95 16 29 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.07 1.50 7.45 -2.39 -0.02 1.49 16 32 H 0.35 9.08 8.35 -89.70 -0.75 8.33 16 33 H 0.07 1.75 8.05 -2.39 -0.02 1.73 16 34 H 0.08 2.23 7.43 -2.39 -0.02 2.21 16 35 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 36 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -67.53 336.54 2.33 -65.20 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 0.33 Total: 9.16 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: 5.61 Total: -9.17 kcal Atomic # 7 Polarization: -107.71 SS G_CDS: -4.32 Total: -112.03 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -1.31 Total: 1.11 kcal Total: -67.53 2.33 -65.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267480023.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.155 kcal (2) G-P(sol) polarization free energy of solvation -67.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds