Wall clock time and date at job start Tue Mar 31 2020 00:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33876 * 125.80890 * 2 1 4 4 C 1.32354 * 109.13931 * 179.97438 * 3 2 1 5 5 S 1.76242 * 141.95454 * 180.02562 * 4 3 2 6 6 C 1.75781 * 90.70267 * 179.97438 * 5 4 3 7 7 C 1.30914 * 109.81575 * 359.97438 * 6 5 4 8 8 N 1.35146 * 108.82290 * 0.02562 * 4 3 2 9 9 C 1.34340 * 125.80594 * 179.97438 * 2 1 3 10 10 C 1.50703 * 126.43458 * 0.04213 * 9 2 1 11 11 N 1.46891 * 109.47353 * 269.99941 * 10 9 2 12 12 C 1.46906 * 110.99890 * 66.04952 * 11 10 9 13 13 C 1.46900 * 111.00181 * 190.00252 * 11 10 9 14 14 C 1.53001 * 109.47004 * 170.00401 * 13 11 10 15 15 C 1.50707 * 109.46901 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99634 * 0.02562 * 15 14 13 17 17 C 1.37870 * 119.99950 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99847 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00208 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47009 * 89.99984 * 19 17 15 21 21 H 1.48498 * 109.47582 * 209.99779 * 19 17 15 22 22 H 1.48498 * 109.47252 * 330.00313 * 19 17 15 23 23 H 1.09004 * 109.47160 * 90.02294 * 1 2 3 24 24 H 1.08993 * 109.47666 * 210.02269 * 1 2 3 25 25 H 1.09005 * 109.47127 * 330.03048 * 1 2 3 26 26 H 1.07998 * 125.08951 * 180.26420 * 6 5 4 27 27 H 1.08001 * 121.83225 * 179.97438 * 7 6 5 28 28 H 1.08998 * 109.47309 * 30.00740 * 10 9 2 29 29 H 1.09001 * 109.46576 * 150.00128 * 10 9 2 30 30 H 1.08999 * 109.46850 * 59.99808 * 12 11 10 31 31 H 1.09001 * 109.47301 * 179.97438 * 12 11 10 32 32 H 1.09001 * 109.46880 * 300.00160 * 12 11 10 33 33 H 1.09003 * 109.46864 * 290.00420 * 13 11 10 34 34 H 1.08995 * 109.46944 * 50.00204 * 13 11 10 35 35 H 1.09000 * 109.46865 * 299.99555 * 14 13 11 36 36 H 1.08995 * 109.47430 * 60.00101 * 14 13 11 37 37 H 0.97005 * 119.99512 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2903 1.0857 0.0000 4 6 3.5582 0.7060 0.0006 5 16 5.1994 1.3484 0.0015 6 6 5.8601 -0.2805 0.0023 7 6 4.8856 -1.1547 0.0024 8 7 3.6090 -0.6445 0.0004 9 6 2.2929 -1.0895 0.0005 10 6 1.8332 -2.5247 0.0002 11 7 1.6831 -2.9911 1.3850 12 6 0.5956 -2.2760 2.0663 13 6 1.4680 -4.4435 1.4311 14 6 1.5649 -4.9278 2.8792 15 6 1.3449 -6.4179 2.9263 16 1 1.1553 -6.9648 2.0145 17 6 1.3866 -7.0831 4.1332 18 7 1.1941 -8.3835 4.1743 19 14 1.7166 -6.1374 5.7100 20 1 0.4292 -5.6781 6.2903 21 1 2.4101 -7.0210 6.6813 22 1 2.5727 -4.9612 5.4118 23 1 -0.3634 -0.0004 -1.0277 24 1 -0.3634 -0.8897 0.5141 25 1 -0.3634 0.8903 0.5134 26 1 6.9123 -0.5236 0.0071 27 1 5.0743 -2.2181 0.0025 28 1 0.8752 -2.5993 -0.5143 29 1 2.5704 -3.1421 -0.5131 30 1 -0.3409 -2.4485 1.5359 31 1 0.5057 -2.6409 3.0895 32 1 0.8147 -1.2083 2.0788 33 1 0.4796 -4.6771 1.0352 34 1 2.2276 -4.9425 0.8294 35 1 2.5533 -4.6941 3.2750 36 1 0.8053 -4.4288 3.4808 37 1 1.2231 -8.8514 5.0236 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268488367.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:21 Heat of formation + Delta-G solvation = 101.294054 kcal Electronic energy + Delta-G solvation = -19359.017444 eV Core-core repulsion = 16457.692591 eV Total energy + Delta-G solvation = -2901.324853 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.76157 -37.66364 -36.65864 -33.24745 -31.73402 -31.32508 -29.80667 -28.17497 -26.22510 -25.31662 -24.00424 -22.42466 -20.61079 -20.00645 -19.77611 -18.08648 -16.97997 -16.31123 -16.01713 -15.09394 -14.99351 -14.79021 -14.58327 -14.05896 -13.75182 -13.30300 -13.08807 -12.94616 -12.59724 -12.47590 -12.29405 -11.86006 -11.64350 -11.50021 -11.39192 -11.10959 -10.97095 -10.52462 -10.19187 -10.00212 -9.95043 -9.78970 -9.26218 -8.77504 -8.56862 -8.02848 -7.67709 -6.08690 -4.07257 0.75557 0.80465 1.47517 2.12685 2.47779 2.73610 3.28872 3.36780 3.42464 4.24236 4.40409 4.42555 4.56169 4.82525 4.95009 5.02868 5.20646 5.25763 5.38064 5.49318 5.57179 5.63029 5.67286 5.77131 5.84606 6.04805 6.14268 6.25037 6.29291 6.49596 6.66802 6.77021 7.05593 7.19839 7.45991 7.52810 7.66125 7.78786 8.47732 8.94850 9.53817 11.04546 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022789 B = 0.004164 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.377258 B = 6723.253671 C = 7288.347795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.046 3.954 3 N -0.456 5.456 4 C 0.134 3.866 5 S 0.171 5.829 6 C -0.231 4.231 7 C 0.067 3.933 8 N -0.396 5.396 9 C 0.004 3.996 10 C 0.127 3.873 11 N -0.543 5.543 12 C 0.019 3.981 13 C 0.071 3.929 14 C -0.006 4.006 15 C -0.523 4.523 16 H 0.071 0.929 17 C 0.069 3.931 18 N -0.903 5.903 19 Si 0.879 3.121 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.264 1.264 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.195 0.805 27 H 0.183 0.817 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.027 0.973 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.030 0.970 34 H 0.066 0.934 35 H 0.023 0.977 36 H 0.013 0.987 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.322 18.005 -10.242 21.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.085 4.085 3 N -0.180 5.180 4 C -0.232 4.232 5 S 0.419 5.581 6 C -0.368 4.368 7 C -0.062 4.062 8 N -0.075 5.075 9 C -0.110 4.110 10 C -0.002 4.002 11 N -0.268 5.268 12 C -0.129 4.129 13 C -0.055 4.055 14 C -0.044 4.044 15 C -0.561 4.561 16 H 0.089 0.911 17 C -0.132 4.132 18 N -0.542 5.542 19 Si 0.706 3.294 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.188 1.188 23 H 0.090 0.910 24 H 0.100 0.900 25 H 0.094 0.906 26 H 0.212 0.788 27 H 0.200 0.800 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.045 0.955 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.085 0.915 35 H 0.041 0.959 36 H 0.031 0.969 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.052 19.942 -9.875 23.343 hybrid contribution -0.703 -2.056 0.543 2.240 sum 6.349 17.886 -9.332 21.149 Atomic orbital electron populations 1.20383 0.86658 1.03847 1.02818 1.20515 0.96488 0.86992 1.04496 1.70459 0.96501 1.29594 1.21426 1.26088 1.00375 0.84182 1.12585 1.84613 0.87135 1.03764 1.82592 1.25014 1.03763 0.95229 1.12756 1.20460 0.80783 1.01796 1.03163 1.43642 1.05506 1.07398 1.50962 1.21091 0.79396 0.97418 1.13125 1.20430 1.00274 0.87882 0.91621 1.62115 1.44977 1.06781 1.12931 1.22604 0.91394 0.98753 1.00148 1.22173 0.99128 0.83391 1.00853 1.19569 0.97032 0.96489 0.91313 1.21062 1.49128 0.90773 0.95151 0.91099 1.24979 0.94495 0.94707 0.99054 1.69915 1.50255 1.07757 1.26249 0.86787 0.78969 0.80323 0.83319 1.20286 1.21371 1.18841 0.90968 0.90010 0.90588 0.78764 0.80002 0.92136 0.90145 0.95474 0.90619 0.91775 0.95149 0.91522 0.95863 0.96914 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 9.47 36.00 0.34 -0.56 16 2 C 0.05 0.67 6.15 -83.08 -0.51 0.16 16 3 N -0.46 -7.27 11.32 -9.77 -0.11 -7.38 16 4 C 0.13 1.93 8.92 -88.71 -0.79 1.14 16 5 S 0.17 1.75 23.37 -107.50 -2.51 -0.76 16 6 C -0.23 -1.95 11.11 29.04 0.32 -1.63 16 7 C 0.07 0.72 11.26 -16.71 -0.19 0.53 16 8 N -0.40 -5.52 3.19 -59.60 -0.19 -5.71 16 9 C 0.00 0.06 6.13 -80.75 -0.50 -0.44 16 10 C 0.13 1.77 5.19 -4.98 -0.03 1.75 16 11 N -0.54 -9.12 4.75 -244.37 -1.16 -10.28 16 12 C 0.02 0.30 7.78 60.07 0.47 0.76 16 13 C 0.07 1.37 4.90 -3.82 -0.02 1.35 16 14 C -0.01 -0.15 3.97 -27.88 -0.11 -0.26 16 15 C -0.52 -14.67 9.66 -34.44 -0.33 -15.00 16 16 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 17 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 18 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 19 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 23 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.08 0.89 4.56 -51.93 -0.24 0.65 16 25 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.20 0.93 8.06 -52.49 -0.42 0.50 16 27 H 0.18 1.62 8.06 -52.49 -0.42 1.19 16 28 H 0.06 0.77 7.74 -51.93 -0.40 0.37 16 29 H 0.08 1.06 7.93 -51.93 -0.41 0.65 16 30 H 0.03 0.38 7.06 -51.93 -0.37 0.01 16 31 H 0.08 1.29 6.30 -51.93 -0.33 0.96 16 32 H 0.06 0.96 5.66 -51.93 -0.29 0.67 16 33 H 0.03 0.58 8.12 -51.93 -0.42 0.16 16 34 H 0.07 1.27 7.93 -51.93 -0.41 0.86 16 35 H 0.02 0.57 7.20 -51.93 -0.37 0.19 16 36 H 0.01 0.30 5.90 -51.93 -0.31 -0.01 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 LS Contribution 311.95 15.07 4.70 4.70 Total: -1.00 -33.22 311.95 -9.44 -42.66 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -4.83 Total: -3.16 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -1.44 Total: -10.29 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: -0.69 Total: -50.21 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.51 Total: -0.76 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.22 -9.44 -42.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268488367.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.955 kcal (2) G-P(sol) polarization free energy of solvation -33.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds