Wall clock time and date at job start Tue Mar 31 2020 00:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33876 * 125.80890 * 2 1 4 4 C 1.32354 * 109.13931 * 179.97438 * 3 2 1 5 5 S 1.76242 * 141.95454 * 180.02562 * 4 3 2 6 6 C 1.75781 * 90.70267 * 179.97438 * 5 4 3 7 7 C 1.30914 * 109.81575 * 359.97438 * 6 5 4 8 8 N 1.35146 * 108.82290 * 0.02562 * 4 3 2 9 9 C 1.34340 * 125.80594 * 179.97438 * 2 1 3 10 10 C 1.50703 * 126.43458 * 0.04213 * 9 2 1 11 11 N 1.46891 * 109.47353 * 269.99941 * 10 9 2 12 12 C 1.46906 * 110.99890 * 66.04952 * 11 10 9 13 13 C 1.46900 * 111.00181 * 190.00252 * 11 10 9 14 14 C 1.53001 * 109.47004 * 170.00401 * 13 11 10 15 15 C 1.50707 * 109.46901 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99634 * 0.02562 * 15 14 13 17 17 C 1.37870 * 119.99950 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99847 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00208 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47009 * 89.99984 * 19 17 15 21 21 H 1.48498 * 109.47582 * 209.99779 * 19 17 15 22 22 H 1.48498 * 109.47252 * 330.00313 * 19 17 15 23 23 H 1.09004 * 109.47160 * 90.02294 * 1 2 3 24 24 H 1.08993 * 109.47666 * 210.02269 * 1 2 3 25 25 H 1.09005 * 109.47127 * 330.03048 * 1 2 3 26 26 H 1.07998 * 125.08951 * 180.26420 * 6 5 4 27 27 H 1.08001 * 121.83225 * 179.97438 * 7 6 5 28 28 H 1.08998 * 109.47309 * 30.00740 * 10 9 2 29 29 H 1.09001 * 109.46576 * 150.00128 * 10 9 2 30 30 H 1.08999 * 109.46850 * 59.99808 * 12 11 10 31 31 H 1.09001 * 109.47301 * 179.97438 * 12 11 10 32 32 H 1.09001 * 109.46880 * 300.00160 * 12 11 10 33 33 H 1.09003 * 109.46864 * 290.00420 * 13 11 10 34 34 H 1.08995 * 109.46944 * 50.00204 * 13 11 10 35 35 H 1.09000 * 109.46865 * 299.99555 * 14 13 11 36 36 H 1.08995 * 109.47430 * 60.00101 * 14 13 11 37 37 H 0.97005 * 119.99512 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2903 1.0857 0.0000 4 6 3.5582 0.7060 0.0006 5 16 5.1994 1.3484 0.0015 6 6 5.8601 -0.2805 0.0023 7 6 4.8856 -1.1547 0.0024 8 7 3.6090 -0.6445 0.0004 9 6 2.2929 -1.0895 0.0005 10 6 1.8332 -2.5247 0.0002 11 7 1.6831 -2.9911 1.3850 12 6 0.5956 -2.2760 2.0663 13 6 1.4680 -4.4435 1.4311 14 6 1.5649 -4.9278 2.8792 15 6 1.3449 -6.4179 2.9263 16 1 1.1553 -6.9648 2.0145 17 6 1.3866 -7.0831 4.1332 18 7 1.1941 -8.3835 4.1743 19 14 1.7166 -6.1374 5.7100 20 1 0.4292 -5.6781 6.2903 21 1 2.4101 -7.0210 6.6813 22 1 2.5727 -4.9612 5.4118 23 1 -0.3634 -0.0004 -1.0277 24 1 -0.3634 -0.8897 0.5141 25 1 -0.3634 0.8903 0.5134 26 1 6.9123 -0.5236 0.0071 27 1 5.0743 -2.2181 0.0025 28 1 0.8752 -2.5993 -0.5143 29 1 2.5704 -3.1421 -0.5131 30 1 -0.3409 -2.4485 1.5359 31 1 0.5057 -2.6409 3.0895 32 1 0.8147 -1.2083 2.0788 33 1 0.4796 -4.6771 1.0352 34 1 2.2276 -4.9425 0.8294 35 1 2.5533 -4.6941 3.2750 36 1 0.8053 -4.4288 3.4808 37 1 1.2231 -8.8514 5.0236 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268488367.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:20 Heat of formation + Delta-G solvation = 79.815126 kcal Electronic energy + Delta-G solvation = -19359.948840 eV Core-core repulsion = 16457.692591 eV Total energy + Delta-G solvation = -2902.256249 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.72214 -38.92802 -37.62918 -35.22172 -33.19958 -32.22266 -31.36630 -29.22750 -27.58386 -26.64588 -25.01833 -23.91846 -21.68845 -21.49700 -20.75544 -19.08786 -18.95170 -17.42431 -16.99429 -16.51846 -16.26527 -15.92587 -15.76778 -15.54160 -14.90131 -14.57841 -14.52553 -14.22888 -13.93196 -13.51749 -13.48153 -13.27062 -12.95070 -12.80456 -12.55744 -12.32712 -12.23990 -11.87215 -11.83013 -11.71707 -11.39181 -11.35642 -11.14709 -10.76060 -9.71959 -9.29300 -8.60959 -8.30661 -6.34264 -0.12150 -0.05820 0.69580 1.22829 1.34493 1.36780 1.49040 1.59387 1.70748 2.34926 3.05267 3.07287 3.36006 3.69855 3.84083 3.99315 4.21688 4.28065 4.36069 4.47031 4.49124 4.58401 4.64553 4.66585 4.76751 4.83768 4.89818 4.96927 5.05466 5.22812 5.27057 5.44797 5.55170 5.61817 5.86151 6.06187 6.10749 6.28697 6.66024 6.73601 7.30728 8.85826 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022789 B = 0.004164 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.377258 B = 6723.253671 C = 7288.347795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.037 3.963 3 N -0.493 5.493 4 C 0.108 3.892 5 S 0.198 5.802 6 C -0.200 4.200 7 C 0.030 3.970 8 N -0.401 5.401 9 C -0.016 4.016 10 C 0.134 3.866 11 N -0.551 5.551 12 C 0.022 3.978 13 C 0.085 3.915 14 C 0.000 4.000 15 C -0.530 4.530 16 H 0.037 0.963 17 C 0.010 3.990 18 N -0.949 5.949 19 Si 0.946 3.054 20 H -0.267 1.267 21 H -0.283 1.283 22 H -0.253 1.253 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.237 0.763 27 H 0.198 0.802 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.029 0.971 34 H 0.067 0.933 35 H 0.016 0.984 36 H 0.017 0.983 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.557 19.633 -10.129 23.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 N -0.218 5.218 4 C -0.257 4.257 5 S 0.446 5.554 6 C -0.337 4.337 7 C -0.097 4.097 8 N -0.079 5.079 9 C -0.131 4.131 10 C 0.006 3.994 11 N -0.276 5.276 12 C -0.126 4.126 13 C -0.042 4.042 14 C -0.038 4.038 15 C -0.569 4.569 16 H 0.055 0.945 17 C -0.187 4.187 18 N -0.589 5.589 19 Si 0.770 3.230 20 H -0.192 1.192 21 H -0.209 1.209 22 H -0.176 1.176 23 H 0.105 0.895 24 H 0.104 0.896 25 H 0.096 0.904 26 H 0.253 0.747 27 H 0.215 0.785 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.085 0.915 35 H 0.035 0.965 36 H 0.035 0.965 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.303 21.586 -9.779 25.110 hybrid contribution -0.990 -2.522 0.415 2.741 sum 7.312 19.063 -9.364 22.463 Atomic orbital electron populations 1.20440 0.85087 1.04087 1.03837 1.20983 0.97682 0.86826 1.03909 1.70425 0.97568 1.30559 1.23285 1.26795 1.01478 0.85061 1.12414 1.84554 0.84677 1.04634 1.81525 1.25588 1.05197 0.93672 1.09221 1.20892 0.80090 1.03122 1.05643 1.43866 1.06256 1.07388 1.50438 1.21114 0.80022 0.97333 1.14610 1.20394 1.01217 0.87860 0.89946 1.61994 1.45535 1.05026 1.15058 1.22579 0.91918 0.98796 0.99298 1.21842 0.99142 0.85322 0.97941 1.19439 0.96497 0.93539 0.94299 1.21398 1.48357 0.93126 0.93974 0.94482 1.25890 0.94374 0.95549 1.02870 1.70055 1.51899 1.09621 1.27372 0.85715 0.79366 0.79130 0.78777 1.19179 1.20910 1.17648 0.89536 0.89613 0.90362 0.74666 0.78543 0.90732 0.89508 0.93839 0.92225 0.91163 0.95273 0.91492 0.96516 0.96467 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.66 9.47 71.24 0.67 -0.98 16 2 C 0.04 1.06 6.15 41.36 0.25 1.31 16 3 N -0.49 -15.53 11.32 -184.83 -2.09 -17.62 16 4 C 0.11 3.01 8.92 179.68 1.60 4.61 16 5 S 0.20 3.63 23.37 -56.49 -1.32 2.31 16 6 C -0.20 -2.74 11.11 67.87 0.75 -1.99 16 7 C 0.03 0.58 11.26 83.86 0.94 1.52 16 8 N -0.40 -10.65 3.19 -342.49 -1.09 -11.74 16 9 C -0.02 -0.44 6.13 40.54 0.25 -0.19 16 10 C 0.13 3.55 5.19 85.56 0.44 4.00 16 11 N -0.55 -17.72 4.75 -927.05 -4.41 -22.13 16 12 C 0.02 0.65 7.78 127.69 0.99 1.64 16 13 C 0.08 3.20 4.90 86.30 0.42 3.62 16 14 C 0.00 0.00 3.97 29.85 0.12 0.12 16 15 C -0.53 -30.10 9.66 25.60 0.25 -29.85 16 16 H 0.04 2.29 7.99 -2.91 -0.02 2.26 16 17 C 0.01 0.60 5.47 84.65 0.46 1.06 16 18 N -0.95 -58.97 13.96 21.45 0.30 -58.67 16 19 Si 0.95 44.50 27.47 68.60 1.88 46.38 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 22 H -0.25 -11.33 6.54 99.48 0.65 -10.68 16 23 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 24 H 0.09 1.73 4.56 -2.39 -0.01 1.72 16 25 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 26 H 0.24 1.09 8.06 -2.91 -0.02 1.07 16 27 H 0.20 3.07 8.06 -2.91 -0.02 3.05 16 28 H 0.07 1.76 7.74 -2.39 -0.02 1.74 16 29 H 0.09 2.16 7.93 -2.39 -0.02 2.14 16 30 H 0.04 1.14 7.06 -2.39 -0.02 1.13 16 31 H 0.06 1.95 6.30 -2.39 -0.02 1.94 16 32 H 0.07 2.01 5.66 -2.39 -0.01 2.00 16 33 H 0.03 1.10 8.12 -2.39 -0.02 1.08 16 34 H 0.07 2.51 7.93 -2.39 -0.02 2.49 16 35 H 0.02 0.79 7.20 -2.39 -0.02 0.77 16 36 H 0.02 0.78 5.90 -2.39 -0.01 0.77 16 37 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 Total: -1.00 -72.40 311.95 1.46 -70.93 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: 1.02 Total: 5.66 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: 7.17 Total: -15.12 kcal Atomic # 7 Polarization: -102.87 SS G_CDS: -7.29 Total: -110.16 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.38 kcal Atomic # 16 Polarization: 3.63 SS G_CDS: -1.32 Total: 2.31 kcal Total: -72.40 1.46 -70.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268488367.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.748 kcal (2) G-P(sol) polarization free energy of solvation -72.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds