Wall clock time and date at job start Tue Mar 31 2020 00:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50693 * 109.47328 * 2 1 4 4 N 1.29028 * 124.91606 * 90.01952 * 3 2 1 5 5 C 1.31787 * 117.12447 * 180.02562 * 4 3 2 6 6 C 1.33640 * 114.49856 * 359.97438 * 5 4 3 7 7 C 1.50703 * 126.03265 * 179.74013 * 6 5 4 8 8 N 1.46900 * 109.47010 * 90.00439 * 7 6 5 9 9 C 1.46902 * 110.99657 * 189.99699 * 8 7 6 10 10 C 1.50707 * 109.46864 * 169.16511 * 9 8 7 11 11 H 1.07993 * 120.00159 * 354.97241 * 10 9 8 12 12 C 1.37878 * 119.99659 * 174.96875 * 10 9 8 13 13 N 1.31509 * 120.00355 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99956 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47222 * 59.99474 * 14 12 10 16 16 H 1.48497 * 109.47546 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46937 * 299.99875 * 14 12 10 18 18 C 1.46892 * 111.00459 * 66.04321 * 8 7 6 19 19 C 1.52995 * 109.47438 * 62.10038 * 18 8 7 20 20 C 1.47204 * 109.47393 * 179.86289 * 19 18 8 21 21 N 7.16937 * 121.67045 * 298.69572 * 2 1 3 22 22 S 1.70977 * 124.91735 * 270.02751 * 3 2 1 23 23 H 1.09003 * 109.47119 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46963 * 299.99739 * 1 2 3 25 25 H 1.09000 * 109.46858 * 59.99953 * 1 2 3 26 26 H 1.08995 * 109.47284 * 239.99557 * 2 1 3 27 27 H 1.09000 * 109.46858 * 120.00047 * 2 1 3 28 28 H 1.08001 * 122.74957 * 180.02562 * 5 4 3 29 29 H 1.09003 * 109.46800 * 209.99310 * 7 6 5 30 30 H 1.08992 * 109.47748 * 330.00099 * 7 6 5 31 31 H 1.08998 * 109.47183 * 289.16349 * 9 8 7 32 32 H 1.08996 * 109.47587 * 49.16718 * 9 8 7 33 33 H 0.97002 * 120.00611 * 179.97438 * 13 12 10 34 34 H 1.09004 * 109.47312 * 182.09936 * 18 8 7 35 35 H 1.09002 * 109.47291 * 302.10092 * 18 8 7 36 36 H 1.09006 * 109.47159 * 299.85849 * 19 18 8 37 37 H 1.09000 * 109.47121 * 59.85841 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2789 2.1169 1.0580 5 6 2.7137 3.3481 0.8794 6 6 2.8414 3.7104 -0.4006 7 6 3.3096 5.0532 -0.8994 8 7 4.7697 5.0340 -1.0599 9 6 5.2890 6.3843 -1.3147 10 6 6.7924 6.3724 -1.2096 11 1 7.3048 5.4744 -0.8976 12 6 7.5136 7.5080 -1.5118 13 7 6.8897 8.6014 -1.8922 14 14 9.3770 7.4931 -1.3822 15 1 9.9287 6.4632 -2.2987 16 1 9.9102 8.8269 -1.7589 17 1 9.7736 7.1771 0.0135 18 6 5.1700 4.1062 -2.1261 19 6 4.5797 4.5743 -3.4577 20 6 4.9836 3.6463 -4.5267 21 7 5.2942 2.9298 -5.3523 22 16 2.3580 2.3436 -1.4020 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.9483 4.0097 1.7001 29 1 2.8414 5.2674 -1.8601 30 1 3.0333 5.8245 -0.1805 31 1 4.9973 6.7030 -2.3154 32 1 4.8789 7.0762 -0.5791 33 1 7.3970 9.4005 -2.1045 34 1 6.2574 4.0835 -2.1987 35 1 4.8002 3.1070 -1.8960 36 1 3.4922 4.5946 -3.3860 37 1 4.9475 5.5745 -3.6866 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274844358.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:44 Heat of formation + Delta-G solvation = 66.493145 kcal Electronic energy + Delta-G solvation = -19019.640435 eV Core-core repulsion = 16116.806501 eV Total energy + Delta-G solvation = -2902.833933 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 3.99 seconds Orbital eigenvalues (eV) -39.64607 -37.94758 -36.00442 -34.14032 -32.77032 -31.19003 -29.82917 -27.22171 -25.85752 -24.57816 -23.38432 -22.53466 -20.29582 -18.90161 -18.03966 -17.36761 -16.37139 -15.55811 -15.31711 -14.76435 -14.58983 -14.41191 -14.23283 -13.91647 -13.63452 -13.58470 -13.00113 -12.43008 -12.35658 -12.19745 -12.06338 -11.85713 -11.66858 -11.53121 -11.32481 -11.17780 -10.98625 -10.81743 -10.68438 -10.33027 -9.99880 -9.54210 -9.38788 -9.08224 -8.62406 -8.52609 -7.51405 -6.13714 -4.15648 0.83181 1.43816 1.86798 2.98652 3.04376 3.07643 3.29081 3.33728 3.36891 4.14720 4.26020 4.36417 4.82600 4.87030 5.02155 5.04540 5.15007 5.22728 5.27969 5.38142 5.51339 5.55646 5.59415 5.70193 5.73659 5.93414 5.95852 6.03754 6.17639 6.35973 6.51939 7.02950 7.11807 7.64178 7.78533 7.86482 7.89241 7.97420 8.33447 8.91836 9.49887 10.96410 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.021372 B = 0.004587 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.804783 B = 6103.031016 C = 6839.813202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.046 4.046 3 C 0.037 3.963 4 N -0.471 5.471 5 C 0.043 3.957 6 C -0.190 4.190 7 C 0.119 3.881 8 N -0.520 5.520 9 C 0.187 3.813 10 C -0.512 4.512 11 H 0.064 0.936 12 C 0.060 3.940 13 N -0.897 5.897 14 Si 0.895 3.105 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.275 1.275 18 C 0.067 3.933 19 C -0.074 4.074 20 C 0.224 3.776 21 N -0.457 5.457 22 S 0.102 5.898 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.176 0.824 29 H 0.045 0.955 30 H 0.096 0.904 31 H 0.007 0.993 32 H 0.033 0.967 33 H 0.263 0.737 34 H 0.095 0.905 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.454 -11.196 2.059 16.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.087 4.087 3 C -0.241 4.241 4 N -0.185 5.185 5 C -0.107 4.107 6 C -0.311 4.311 7 C -0.011 4.011 8 N -0.243 5.243 9 C 0.062 3.938 10 C -0.550 4.550 11 H 0.082 0.918 12 C -0.142 4.142 13 N -0.536 5.536 14 Si 0.723 3.277 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.201 1.201 18 C -0.063 4.063 19 C -0.116 4.116 20 C -0.093 4.093 21 N -0.135 5.135 22 S 0.356 5.644 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.101 0.899 27 H 0.110 0.890 28 H 0.193 0.807 29 H 0.063 0.937 30 H 0.114 0.886 31 H 0.025 0.975 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.114 0.886 35 H 0.082 0.918 36 H 0.113 0.887 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.897 -12.652 0.691 17.381 hybrid contribution 0.836 1.379 0.347 1.649 sum -11.061 -11.274 1.038 15.828 Atomic orbital electron populations 1.21761 0.93768 1.02266 1.02624 1.20164 0.96508 0.87994 1.03993 1.26917 1.04305 1.01718 0.91196 1.66255 1.14465 1.06242 1.31571 1.21669 1.00943 0.91978 0.96154 1.26024 1.08195 1.00974 0.95882 1.20588 0.90624 0.89948 0.99980 1.62454 1.06598 1.12958 1.42307 1.19900 0.95792 0.82120 0.95950 1.21064 0.90759 0.97855 1.45346 0.91754 1.24937 0.98704 0.95436 0.95141 1.69916 1.35846 1.01959 1.45850 0.86594 0.85289 0.77088 0.78707 1.20243 1.21351 1.20094 1.22151 1.02531 0.96019 0.85638 1.20220 1.02181 0.97849 0.91360 1.29194 0.92823 0.93575 0.93757 1.81157 1.09675 1.11191 1.11440 1.83979 1.60764 1.06694 1.13007 0.91640 0.92002 0.92438 0.89935 0.89034 0.80659 0.93720 0.88575 0.97540 0.94918 0.92721 0.88625 0.91830 0.88690 0.85746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.90 37.16 0.37 -0.76 16 2 C -0.05 -0.42 6.52 -27.88 -0.18 -0.60 16 3 C 0.04 0.46 6.64 -13.46 -0.09 0.37 16 4 N -0.47 -6.81 10.54 -11.86 -0.13 -6.94 16 5 C 0.04 0.61 11.25 -19.18 -0.22 0.40 16 6 C -0.19 -2.64 5.30 -35.92 -0.19 -2.83 16 7 C 0.12 1.75 5.29 -4.97 -0.03 1.72 16 8 N -0.52 -9.35 4.69 -237.52 -1.11 -10.47 16 9 C 0.19 4.11 4.52 -4.97 -0.02 4.08 16 10 C -0.51 -12.91 8.40 -34.44 -0.29 -13.20 16 11 H 0.06 1.64 7.36 -52.49 -0.39 1.25 16 12 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 13 N -0.90 -24.56 13.29 55.43 0.74 -23.83 16 14 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 C 0.07 1.12 4.91 -3.83 -0.02 1.10 16 19 C -0.07 -1.10 5.05 -29.52 -0.15 -1.25 16 20 C 0.22 3.61 15.44 -20.74 -0.32 3.29 16 21 N -0.46 -8.21 18.54 42.17 0.78 -7.43 16 22 S 0.10 1.25 21.79 -107.50 -2.34 -1.09 16 23 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.18 2.31 8.06 -52.49 -0.42 1.89 16 29 H 0.04 0.60 6.07 -51.93 -0.32 0.28 16 30 H 0.10 1.37 7.92 -51.93 -0.41 0.96 16 31 H 0.01 0.16 6.02 -51.93 -0.31 -0.16 16 32 H 0.03 0.77 7.91 -51.93 -0.41 0.36 16 33 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.10 1.79 6.97 -51.93 -0.36 1.43 16 35 H 0.06 0.99 6.00 -51.93 -0.31 0.68 16 36 H 0.10 1.20 6.33 -51.93 -0.33 0.87 16 37 H 0.12 2.03 6.29 -51.93 -0.33 1.70 16 LS Contribution 326.32 15.07 4.92 4.92 Total: -1.00 -28.73 326.32 -8.24 -36.97 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -4.84 Total: -1.51 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -1.23 Total: -6.22 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: 0.28 Total: -48.66 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.34 Total: -1.09 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.73 -8.24 -36.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274844358.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.461 kcal (2) G-P(sol) polarization free energy of solvation -28.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.00 seconds