Wall clock time and date at job start Tue Mar 31 2020 00:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50693 * 109.47328 * 2 1 4 4 N 1.29028 * 124.91606 * 90.01952 * 3 2 1 5 5 C 1.31787 * 117.12447 * 180.02562 * 4 3 2 6 6 C 1.33640 * 114.49856 * 359.97438 * 5 4 3 7 7 C 1.50703 * 126.03265 * 179.74013 * 6 5 4 8 8 N 1.46900 * 109.47010 * 90.00439 * 7 6 5 9 9 C 1.46902 * 110.99657 * 189.99699 * 8 7 6 10 10 C 1.50707 * 109.46864 * 169.16511 * 9 8 7 11 11 H 1.07993 * 120.00159 * 354.97241 * 10 9 8 12 12 C 1.37878 * 119.99659 * 174.96875 * 10 9 8 13 13 N 1.31509 * 120.00355 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99956 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47222 * 59.99474 * 14 12 10 16 16 H 1.48497 * 109.47546 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46937 * 299.99875 * 14 12 10 18 18 C 1.46892 * 111.00459 * 66.04321 * 8 7 6 19 19 C 1.52995 * 109.47438 * 62.10038 * 18 8 7 20 20 C 1.47204 * 109.47393 * 179.86289 * 19 18 8 21 21 N 7.16937 * 121.67045 * 298.69572 * 2 1 3 22 22 S 1.70977 * 124.91735 * 270.02751 * 3 2 1 23 23 H 1.09003 * 109.47119 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46963 * 299.99739 * 1 2 3 25 25 H 1.09000 * 109.46858 * 59.99953 * 1 2 3 26 26 H 1.08995 * 109.47284 * 239.99557 * 2 1 3 27 27 H 1.09000 * 109.46858 * 120.00047 * 2 1 3 28 28 H 1.08001 * 122.74957 * 180.02562 * 5 4 3 29 29 H 1.09003 * 109.46800 * 209.99310 * 7 6 5 30 30 H 1.08992 * 109.47748 * 330.00099 * 7 6 5 31 31 H 1.08998 * 109.47183 * 289.16349 * 9 8 7 32 32 H 1.08996 * 109.47587 * 49.16718 * 9 8 7 33 33 H 0.97002 * 120.00611 * 179.97438 * 13 12 10 34 34 H 1.09004 * 109.47312 * 182.09936 * 18 8 7 35 35 H 1.09002 * 109.47291 * 302.10092 * 18 8 7 36 36 H 1.09006 * 109.47159 * 299.85849 * 19 18 8 37 37 H 1.09000 * 109.47121 * 59.85841 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2789 2.1169 1.0580 5 6 2.7137 3.3481 0.8794 6 6 2.8414 3.7104 -0.4006 7 6 3.3096 5.0532 -0.8994 8 7 4.7697 5.0340 -1.0599 9 6 5.2890 6.3843 -1.3147 10 6 6.7924 6.3724 -1.2096 11 1 7.3048 5.4744 -0.8976 12 6 7.5136 7.5080 -1.5118 13 7 6.8897 8.6014 -1.8922 14 14 9.3770 7.4931 -1.3822 15 1 9.9287 6.4632 -2.2987 16 1 9.9102 8.8269 -1.7589 17 1 9.7736 7.1771 0.0135 18 6 5.1700 4.1062 -2.1261 19 6 4.5797 4.5743 -3.4577 20 6 4.9836 3.6463 -4.5267 21 7 5.2942 2.9298 -5.3523 22 16 2.3580 2.3436 -1.4020 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.9483 4.0097 1.7001 29 1 2.8414 5.2674 -1.8601 30 1 3.0333 5.8245 -0.1805 31 1 4.9973 6.7030 -2.3154 32 1 4.8789 7.0762 -0.5791 33 1 7.3970 9.4005 -2.1045 34 1 6.2574 4.0835 -2.1987 35 1 4.8002 3.1070 -1.8960 36 1 3.4922 4.5946 -3.3860 37 1 4.9475 5.5745 -3.6866 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274844358.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:44 Heat of formation + Delta-G solvation = 49.453412 kcal Electronic energy + Delta-G solvation = -19020.379333 eV Core-core repulsion = 16116.806501 eV Total energy + Delta-G solvation = -2903.572832 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -40.70696 -39.31971 -37.37829 -35.07841 -34.57096 -32.36748 -31.24333 -28.68922 -27.06293 -25.82402 -24.83293 -23.49531 -21.74310 -19.96028 -19.18656 -18.60282 -18.22202 -16.99606 -16.52221 -16.26679 -15.74823 -15.52530 -15.29876 -15.18605 -14.86898 -14.68982 -14.35821 -13.86898 -13.59526 -13.51973 -13.17558 -13.06623 -12.95365 -12.83329 -12.63316 -12.50231 -12.40798 -12.12090 -11.99980 -11.90822 -11.54262 -11.29055 -10.54773 -10.50785 -10.12994 -9.65241 -8.97470 -8.13468 -6.19829 -0.19390 0.43727 0.83713 1.45622 1.46639 1.53363 1.72260 1.76186 1.92583 2.45109 2.95634 3.21124 3.25918 3.47382 3.95355 4.06352 4.09325 4.12171 4.30529 4.32744 4.36946 4.46124 4.72202 4.77875 4.83189 4.92452 5.01966 5.08721 5.12925 5.28073 5.37032 5.37635 5.39324 5.73022 6.12260 6.27790 6.54527 6.62144 6.84637 6.95313 7.48965 8.95649 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.021372 B = 0.004587 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.804783 B = 6103.031016 C = 6839.813202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.049 4.049 3 C 0.040 3.960 4 N -0.498 5.498 5 C 0.036 3.964 6 C -0.207 4.207 7 C 0.123 3.877 8 N -0.529 5.529 9 C 0.200 3.800 10 C -0.517 4.517 11 H 0.058 0.942 12 C 0.014 3.986 13 N -0.926 5.926 14 Si 0.948 3.052 15 H -0.274 1.274 16 H -0.287 1.287 17 H -0.273 1.273 18 C 0.072 3.928 19 C -0.062 4.062 20 C 0.243 3.757 21 N -0.486 5.486 22 S 0.128 5.872 23 H 0.087 0.913 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.178 0.822 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.002 0.998 32 H 0.013 0.987 33 H 0.263 0.737 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.124 0.876 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.242 -12.649 1.795 18.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.090 4.090 3 C -0.238 4.238 4 N -0.213 5.213 5 C -0.114 4.114 6 C -0.328 4.328 7 C -0.007 4.007 8 N -0.252 5.252 9 C 0.075 3.925 10 C -0.556 4.556 11 H 0.076 0.924 12 C -0.185 4.185 13 N -0.567 5.567 14 Si 0.775 3.225 15 H -0.200 1.200 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.058 4.058 19 C -0.104 4.104 20 C -0.074 4.074 21 N -0.164 5.164 22 S 0.383 5.617 23 H 0.106 0.894 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.119 0.881 27 H 0.113 0.887 28 H 0.195 0.805 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.019 0.981 32 H 0.031 0.969 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.142 0.858 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -12.691 -14.124 0.426 18.992 hybrid contribution 1.013 1.734 0.471 2.063 sum -11.677 -12.390 0.896 17.049 Atomic orbital electron populations 1.21744 0.92547 1.03613 1.02098 1.20387 0.97467 0.86078 1.05089 1.27567 1.02599 1.02752 0.90843 1.66309 1.15894 1.06530 1.32569 1.21819 1.00760 0.92259 0.96564 1.25880 1.09374 1.01272 0.96272 1.20552 0.88403 0.90799 1.00952 1.62270 1.09061 1.10906 1.42952 1.19552 0.94131 0.83930 0.94901 1.21394 0.92666 0.97343 1.44198 0.92417 1.25596 1.02259 0.95356 0.95269 1.70006 1.37051 1.02413 1.47207 0.85754 0.81191 0.76963 0.78615 1.19958 1.21254 1.19858 1.22038 1.01238 0.96378 0.86192 1.20137 1.03722 0.96626 0.89917 1.29256 0.91893 0.92982 0.93315 1.81180 1.10710 1.12167 1.12352 1.83816 1.60159 1.05524 1.12213 0.89405 0.93169 0.92304 0.88086 0.88672 0.80499 0.92008 0.88532 0.98073 0.96873 0.92854 0.91035 0.90445 0.85830 0.86940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.90 71.98 0.71 -1.13 16 2 C -0.05 -0.78 6.52 29.85 0.19 -0.59 16 3 C 0.04 0.92 6.64 88.52 0.59 1.51 16 4 N -0.50 -13.80 10.54 -191.45 -2.02 -15.82 16 5 C 0.04 1.01 11.25 83.66 0.94 1.95 16 6 C -0.21 -5.47 5.30 24.64 0.13 -5.34 16 7 C 0.12 3.45 5.29 85.56 0.45 3.91 16 8 N -0.53 -18.71 4.69 -905.38 -4.24 -22.95 16 9 C 0.20 8.85 4.52 85.56 0.39 9.23 16 10 C -0.52 -26.24 8.40 25.60 0.21 -26.02 16 11 H 0.06 2.95 7.36 -2.91 -0.02 2.93 16 12 C 0.01 0.74 5.46 84.66 0.46 1.20 16 13 N -0.93 -51.10 13.29 21.45 0.28 -50.82 16 14 Si 0.95 42.30 29.54 68.60 2.03 44.32 16 15 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 16 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 18 C 0.07 2.32 4.91 86.30 0.42 2.74 16 19 C -0.06 -1.75 5.05 28.79 0.15 -1.61 16 20 C 0.24 7.44 15.44 89.44 1.38 8.83 16 21 N -0.49 -16.84 18.54 20.01 0.37 -16.47 16 22 S 0.13 2.87 21.79 -56.49 -1.23 1.64 16 23 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.18 4.64 8.06 -2.91 -0.02 4.61 16 29 H 0.06 1.53 6.07 -2.39 -0.01 1.51 16 30 H 0.10 2.70 7.92 -2.39 -0.02 2.68 16 31 H 0.00 0.07 6.02 -2.39 -0.01 0.06 16 32 H 0.01 0.63 7.91 -2.39 -0.02 0.61 16 33 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 34 H 0.07 2.66 6.97 -2.38 -0.02 2.64 16 35 H 0.08 2.28 6.00 -2.39 -0.01 2.27 16 36 H 0.12 2.78 6.33 -2.38 -0.02 2.77 16 37 H 0.11 3.57 6.29 -2.39 -0.02 3.56 16 Total: -1.00 -60.56 326.32 2.30 -58.26 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: 1.08 Total: 7.15 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 6.03 Total: -5.31 kcal Atomic # 7 Polarization: -100.45 SS G_CDS: -5.61 Total: -106.06 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Atomic # 16 Polarization: 2.87 SS G_CDS: -1.23 Total: 1.64 kcal Total: -60.56 2.30 -58.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274844358.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.715 kcal (2) G-P(sol) polarization free energy of solvation -60.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds