Wall clock time and date at job start Tue Mar 31 2020 01:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.47091 * 2 1 4 4 C 1.52992 * 109.47018 * 239.99310 * 2 1 3 5 5 N 1.46501 * 109.47522 * 65.00234 * 4 2 1 6 6 C 1.36931 * 119.99794 * 89.99318 * 5 4 2 7 7 H 1.08003 * 120.00539 * 214.39369 * 6 5 4 8 8 C 1.38819 * 119.99916 * 34.39601 * 6 5 4 9 9 N 1.31607 * 119.99899 * 23.41597 * 8 6 5 10 10 Si 1.86800 * 119.99733 * 203.41231 * 8 6 5 11 11 H 1.48504 * 109.47213 * 90.00119 * 10 8 6 12 12 H 1.48506 * 109.46921 * 209.99917 * 10 8 6 13 13 H 1.48502 * 109.47410 * 330.00020 * 10 8 6 14 14 C 1.46496 * 120.00181 * 270.00406 * 5 4 2 15 15 C 1.53002 * 117.50091 * 194.26491 * 14 5 4 16 16 C 1.53005 * 117.50092 * 125.60530 * 14 5 4 17 17 C 1.50709 * 109.46750 * 119.99627 * 2 1 3 18 18 C 1.38261 * 119.99205 * 239.99879 * 17 2 1 19 19 C 1.38214 * 120.02764 * 180.02562 * 18 17 2 20 20 C 1.38240 * 120.01356 * 359.97438 * 19 18 17 21 21 C 1.38334 * 119.98282 * 0.02562 * 20 19 18 22 22 Cl 1.73600 * 120.00927 * 180.02562 * 21 20 19 23 23 C 1.38187 * 119.99451 * 59.71928 * 17 2 1 24 24 H 1.08994 * 109.47480 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46887 * 60.00314 * 1 2 3 26 26 H 1.09006 * 109.47123 * 300.00547 * 1 2 3 27 27 H 1.09006 * 109.47361 * 185.00240 * 4 2 1 28 28 H 1.09002 * 109.47384 * 304.99973 * 4 2 1 29 29 H 0.97003 * 119.99925 * 174.88882 * 9 8 6 30 30 H 1.09000 * 115.54925 * 339.93490 * 14 5 4 31 31 H 1.09001 * 117.49483 * 359.97438 * 15 14 5 32 32 H 1.08998 * 117.49913 * 145.01505 * 15 14 5 33 33 H 1.08997 * 117.49590 * 214.97636 * 16 14 5 34 34 H 1.08999 * 117.49868 * 359.97438 * 16 14 5 35 35 H 1.08007 * 119.98576 * 359.97438 * 18 17 2 36 36 H 1.07997 * 119.99443 * 179.97438 * 19 18 17 37 37 H 1.07997 * 120.00726 * 180.02562 * 20 19 18 38 38 H 1.08007 * 120.00761 * 0.02562 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2491 5 7 1.6525 0.0351 -2.4424 6 6 2.4847 1.0018 -2.9403 7 1 2.0702 1.8893 -3.3952 8 6 3.8612 0.8410 -2.8605 9 7 4.3777 -0.3646 -2.7517 10 14 4.9803 2.3360 -2.9076 11 1 5.2072 2.8282 -1.5250 12 1 6.2807 1.9617 -3.5194 13 1 4.3428 3.4064 -3.7157 14 6 0.3746 -0.2426 -3.1028 15 6 0.1685 0.3233 -4.5093 16 6 -0.5783 0.9344 -3.3210 17 6 2.0323 -0.7104 1.2306 18 6 2.8271 -0.0383 2.1406 19 6 3.2886 -0.6892 3.2692 20 6 2.9552 -2.0127 3.4890 21 6 2.1599 -2.6856 2.5789 22 17 1.7403 -4.3474 2.8546 23 6 1.6935 -2.0316 1.4522 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 3.1263 -0.7997 -1.2055 28 1 1.6053 -1.7199 -1.2949 29 1 5.3402 -0.4833 -2.7705 30 1 -0.0678 -1.2139 -2.8813 31 1 0.9837 0.9026 -4.9430 32 1 -0.4096 -0.2755 -5.2130 33 1 -1.6475 0.7374 -3.2435 34 1 -0.2546 1.9153 -2.9729 35 1 3.0882 0.9956 1.9690 36 1 3.9098 -0.1638 3.9794 37 1 3.3155 -2.5211 4.3711 38 1 1.0692 -2.5554 0.7433 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275700463.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:40 Heat of formation + Delta-G solvation = 54.225149 kcal Electronic energy + Delta-G solvation = -19727.511643 eV Core-core repulsion = 16789.809272 eV Total energy + Delta-G solvation = -2937.702371 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -39.33068 -37.29461 -36.33593 -34.59787 -32.87400 -30.48767 -30.35775 -28.77398 -25.64189 -24.21591 -22.73897 -22.11097 -21.38236 -19.88568 -19.51678 -16.76575 -16.28929 -15.60578 -15.30077 -14.92894 -14.40394 -13.92630 -13.69093 -13.57683 -13.37056 -12.89818 -12.61506 -12.23561 -11.79986 -11.61476 -11.35075 -11.25480 -10.97841 -10.95143 -10.84878 -10.83018 -10.62054 -10.33205 -10.16953 -9.99506 -9.85606 -9.48777 -9.26528 -8.61279 -8.44986 -8.37986 -6.53130 -5.85529 -3.37879 1.42022 1.54346 2.29023 3.31051 3.39890 3.40560 3.90082 4.39182 4.92527 4.96733 5.01302 5.20444 5.31187 5.41445 5.56207 5.65276 5.72642 5.89242 5.93469 5.99450 6.06751 6.13924 6.20700 6.34731 6.42762 6.46430 6.52697 6.58691 6.60827 6.62718 6.84674 6.91615 6.99315 7.09547 7.16107 7.21853 7.64144 7.79523 8.45268 9.11935 9.75913 10.30959 11.14621 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016425 B = 0.005747 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.295742 B = 4870.950119 C = 5758.904959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.077 4.077 3 H 0.079 0.921 4 C 0.157 3.843 5 N -0.546 5.546 6 C -0.262 4.262 7 H 0.064 0.936 8 C 0.015 3.985 9 N -0.884 5.884 10 Si 0.897 3.103 11 H -0.285 1.285 12 H -0.291 1.291 13 H -0.277 1.277 14 C 0.131 3.869 15 C -0.200 4.200 16 C -0.228 4.228 17 C -0.037 4.037 18 C -0.115 4.115 19 C -0.108 4.108 20 C -0.130 4.130 21 C -0.031 4.031 22 Cl -0.085 7.085 23 C -0.106 4.106 24 H 0.043 0.957 25 H 0.074 0.926 26 H 0.036 0.964 27 H 0.103 0.897 28 H 0.026 0.974 29 H 0.257 0.743 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.074 -2.537 9.983 11.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.098 4.098 3 H 0.097 0.903 4 C 0.030 3.970 5 N -0.261 5.261 6 C -0.391 4.391 7 H 0.082 0.918 8 C -0.185 4.185 9 N -0.526 5.526 10 Si 0.726 3.274 11 H -0.212 1.212 12 H -0.217 1.217 13 H -0.203 1.203 14 C 0.021 3.979 15 C -0.238 4.238 16 C -0.269 4.269 17 C -0.038 4.038 18 C -0.134 4.134 19 C -0.126 4.126 20 C -0.149 4.149 21 C -0.058 4.058 22 Cl -0.056 7.056 23 C -0.125 4.125 24 H 0.062 0.938 25 H 0.093 0.907 26 H 0.055 0.945 27 H 0.120 0.880 28 H 0.045 0.955 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.883 -2.762 10.066 11.524 hybrid contribution 0.624 0.637 -0.046 0.893 sum -4.260 -2.125 10.020 11.093 Atomic orbital electron populations 1.21857 0.95233 1.00839 1.01582 1.20969 0.95474 1.00478 0.92892 0.90282 1.21064 1.02997 0.90677 0.82223 1.43415 1.15732 1.41620 1.25329 1.18955 0.86541 0.96819 1.36818 0.91795 1.25117 0.97484 0.95885 1.00064 1.69889 1.11438 1.19900 1.51406 0.86384 0.80152 0.82876 0.77957 1.21201 1.21712 1.20259 1.21094 0.89355 0.93168 0.94295 1.23111 1.03006 1.05581 0.92150 1.23389 0.96679 1.01148 1.05718 1.20145 0.94847 0.93045 0.95747 1.21254 0.97683 1.00477 0.93957 1.21029 0.99825 0.93946 0.97850 1.20884 0.99617 0.94999 0.99352 1.20882 1.01701 0.85441 0.97761 1.98342 1.92601 1.18427 1.96256 1.20916 1.00889 0.94653 0.96052 0.93807 0.90688 0.94460 0.87967 0.95531 0.93242 0.89571 0.88379 0.90910 0.91006 0.89702 0.85657 0.85654 0.85683 0.85159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.57 37.16 0.32 -1.97 16 2 C -0.08 -1.44 2.77 -91.77 -0.25 -1.69 16 3 H 0.08 1.60 7.88 -51.93 -0.41 1.19 16 4 C 0.16 3.45 4.55 -4.05 -0.02 3.43 16 5 N -0.55 -12.74 2.63 -165.66 -0.44 -13.18 16 6 C -0.26 -6.75 8.16 -15.06 -0.12 -6.87 16 7 H 0.06 1.67 7.08 -52.48 -0.37 1.30 16 8 C 0.02 0.40 4.93 -17.43 -0.09 0.32 16 9 N -0.88 -24.53 11.37 55.49 0.63 -23.90 16 10 Si 0.90 20.92 29.62 -169.99 -5.03 15.88 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 C 0.13 2.68 5.12 -67.93 -0.35 2.33 16 15 C -0.20 -3.90 9.80 -26.69 -0.26 -4.17 16 16 C -0.23 -4.19 8.80 -26.69 -0.23 -4.43 16 17 C -0.04 -0.62 4.78 -104.63 -0.50 -1.12 16 18 C -0.12 -1.79 9.67 -39.58 -0.38 -2.17 16 19 C -0.11 -1.45 10.05 -39.59 -0.40 -1.85 16 20 C -0.13 -1.74 9.83 -39.55 -0.39 -2.13 16 21 C -0.03 -0.46 6.32 -39.50 -0.25 -0.71 16 22 Cl -0.08 -1.14 28.96 -51.86 -1.50 -2.64 16 23 C -0.11 -1.70 8.55 -39.55 -0.34 -2.04 16 24 H 0.04 0.68 7.37 -51.93 -0.38 0.30 16 25 H 0.07 1.31 5.30 -51.93 -0.27 1.04 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.10 2.62 5.36 -51.93 -0.28 2.34 16 28 H 0.03 0.56 7.48 -51.93 -0.39 0.18 16 29 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 30 H 0.09 1.65 8.10 -51.93 -0.42 1.23 16 31 H 0.10 2.13 6.89 -51.93 -0.36 1.78 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.08 1.67 8.01 -51.93 -0.42 1.25 16 35 H 0.13 1.84 7.95 -52.48 -0.42 1.42 16 36 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.13 2.04 7.16 -52.48 -0.38 1.67 16 LS Contribution 323.22 15.07 4.87 4.87 Total: -1.00 -26.76 323.22 -10.08 -36.83 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -5.34 Total: 5.20 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: -3.26 Total: -23.07 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.19 Total: -37.08 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.88 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.50 Total: -2.64 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -26.76 -10.08 -36.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275700463.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.059 kcal (2) G-P(sol) polarization free energy of solvation -26.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds