Wall clock time and date at job start Tue Mar 31 2020 01:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.47091 * 2 1 4 4 C 1.52992 * 109.47018 * 239.99310 * 2 1 3 5 5 N 1.46501 * 109.47522 * 65.00234 * 4 2 1 6 6 C 1.36931 * 119.99794 * 89.99318 * 5 4 2 7 7 H 1.08003 * 120.00539 * 214.39369 * 6 5 4 8 8 C 1.38819 * 119.99916 * 34.39601 * 6 5 4 9 9 N 1.31607 * 119.99899 * 23.41597 * 8 6 5 10 10 Si 1.86800 * 119.99733 * 203.41231 * 8 6 5 11 11 H 1.48504 * 109.47213 * 90.00119 * 10 8 6 12 12 H 1.48506 * 109.46921 * 209.99917 * 10 8 6 13 13 H 1.48502 * 109.47410 * 330.00020 * 10 8 6 14 14 C 1.46496 * 120.00181 * 270.00406 * 5 4 2 15 15 C 1.53002 * 117.50091 * 194.26491 * 14 5 4 16 16 C 1.53005 * 117.50092 * 125.60530 * 14 5 4 17 17 C 1.50709 * 109.46750 * 119.99627 * 2 1 3 18 18 C 1.38261 * 119.99205 * 239.99879 * 17 2 1 19 19 C 1.38214 * 120.02764 * 180.02562 * 18 17 2 20 20 C 1.38240 * 120.01356 * 359.97438 * 19 18 17 21 21 C 1.38334 * 119.98282 * 0.02562 * 20 19 18 22 22 Cl 1.73600 * 120.00927 * 180.02562 * 21 20 19 23 23 C 1.38187 * 119.99451 * 59.71928 * 17 2 1 24 24 H 1.08994 * 109.47480 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46887 * 60.00314 * 1 2 3 26 26 H 1.09006 * 109.47123 * 300.00547 * 1 2 3 27 27 H 1.09006 * 109.47361 * 185.00240 * 4 2 1 28 28 H 1.09002 * 109.47384 * 304.99973 * 4 2 1 29 29 H 0.97003 * 119.99925 * 174.88882 * 9 8 6 30 30 H 1.09000 * 115.54925 * 339.93490 * 14 5 4 31 31 H 1.09001 * 117.49483 * 359.97438 * 15 14 5 32 32 H 1.08998 * 117.49913 * 145.01505 * 15 14 5 33 33 H 1.08997 * 117.49590 * 214.97636 * 16 14 5 34 34 H 1.08999 * 117.49868 * 359.97438 * 16 14 5 35 35 H 1.08007 * 119.98576 * 359.97438 * 18 17 2 36 36 H 1.07997 * 119.99443 * 179.97438 * 19 18 17 37 37 H 1.07997 * 120.00726 * 180.02562 * 20 19 18 38 38 H 1.08007 * 120.00761 * 0.02562 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2491 5 7 1.6525 0.0351 -2.4424 6 6 2.4847 1.0018 -2.9403 7 1 2.0702 1.8893 -3.3952 8 6 3.8612 0.8410 -2.8605 9 7 4.3777 -0.3646 -2.7517 10 14 4.9803 2.3360 -2.9076 11 1 5.2072 2.8282 -1.5250 12 1 6.2807 1.9617 -3.5194 13 1 4.3428 3.4064 -3.7157 14 6 0.3746 -0.2426 -3.1028 15 6 0.1685 0.3233 -4.5093 16 6 -0.5783 0.9344 -3.3210 17 6 2.0323 -0.7104 1.2306 18 6 2.8271 -0.0383 2.1406 19 6 3.2886 -0.6892 3.2692 20 6 2.9552 -2.0127 3.4890 21 6 2.1599 -2.6856 2.5789 22 17 1.7403 -4.3474 2.8546 23 6 1.6935 -2.0316 1.4522 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 3.1263 -0.7997 -1.2055 28 1 1.6053 -1.7199 -1.2949 29 1 5.3402 -0.4833 -2.7705 30 1 -0.0678 -1.2139 -2.8813 31 1 0.9837 0.9026 -4.9430 32 1 -0.4096 -0.2755 -5.2130 33 1 -1.6475 0.7374 -3.2435 34 1 -0.2546 1.9153 -2.9729 35 1 3.0882 0.9956 1.9690 36 1 3.9098 -0.1638 3.9794 37 1 3.3155 -2.5211 4.3711 38 1 1.0692 -2.5554 0.7433 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275700463.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:40 Heat of formation + Delta-G solvation = 43.477946 kcal Electronic energy + Delta-G solvation = -19727.977677 eV Core-core repulsion = 16789.809272 eV Total energy + Delta-G solvation = -2938.168405 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.55881 -38.90106 -37.47159 -36.05891 -34.64026 -32.07955 -31.62921 -30.13160 -27.40201 -25.87118 -24.05215 -23.35470 -22.90577 -21.61955 -20.94242 -18.19995 -17.88786 -17.31987 -16.55917 -16.17567 -16.15065 -15.67754 -15.08291 -14.75248 -14.66611 -14.29413 -14.15101 -13.69960 -13.42748 -12.96946 -12.80324 -12.70614 -12.66094 -12.51857 -12.33287 -12.17103 -12.09359 -11.97513 -11.75724 -11.55635 -11.43500 -11.17139 -10.87742 -10.37524 -9.77596 -9.56833 -8.42013 -7.81197 -5.37851 0.25557 0.38997 1.17262 1.43278 1.46833 1.53939 2.47789 2.73193 3.15766 3.44872 3.50956 3.89795 3.94628 4.17540 4.30270 4.33332 4.41121 4.49093 4.50898 4.54277 4.67798 4.69770 4.82244 4.96549 4.98004 5.07564 5.11065 5.20889 5.28342 5.36073 5.40021 5.48331 5.51542 5.57801 5.68708 5.80175 5.85093 5.92793 6.47852 7.17102 7.89300 8.38367 9.13636 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016425 B = 0.005747 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.295742 B = 4870.950119 C = 5758.904959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.063 4.063 3 H 0.055 0.945 4 C 0.164 3.836 5 N -0.562 5.562 6 C -0.257 4.257 7 H 0.055 0.945 8 C -0.032 4.032 9 N -0.915 5.915 10 Si 0.950 3.050 11 H -0.283 1.283 12 H -0.295 1.295 13 H -0.272 1.272 14 C 0.108 3.892 15 C -0.202 4.202 16 C -0.200 4.200 17 C -0.057 4.057 18 C -0.130 4.130 19 C -0.101 4.101 20 C -0.124 4.124 21 C -0.040 4.040 22 Cl -0.074 7.074 23 C -0.117 4.117 24 H 0.052 0.948 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.026 0.974 29 H 0.252 0.748 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.069 0.931 35 H 0.126 0.874 36 H 0.158 0.842 37 H 0.153 0.847 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.000 -2.548 11.442 13.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.084 4.084 3 H 0.073 0.927 4 C 0.038 3.962 5 N -0.278 5.278 6 C -0.387 4.387 7 H 0.073 0.927 8 C -0.229 4.229 9 N -0.559 5.559 10 Si 0.779 3.221 11 H -0.210 1.210 12 H -0.222 1.222 13 H -0.197 1.197 14 C 0.000 4.000 15 C -0.241 4.241 16 C -0.240 4.240 17 C -0.058 4.058 18 C -0.148 4.148 19 C -0.119 4.119 20 C -0.143 4.143 21 C -0.066 4.066 22 Cl -0.045 7.045 23 C -0.135 4.135 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.044 0.956 29 H 0.061 0.939 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.088 0.912 35 H 0.144 0.856 36 H 0.176 0.824 37 H 0.171 0.829 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.841 -2.764 11.527 13.214 hybrid contribution 0.856 0.584 -0.475 1.140 sum -4.986 -2.180 11.052 12.319 Atomic orbital electron populations 1.21749 0.93551 1.01492 1.01756 1.20647 0.96816 0.98653 0.92299 0.92660 1.20875 1.00822 0.91063 0.83489 1.43554 1.16484 1.41500 1.26258 1.19044 0.87021 0.96996 1.35650 0.92695 1.25690 0.98631 0.97766 1.00845 1.70025 1.11054 1.21429 1.53400 0.85542 0.78354 0.80437 0.77814 1.21010 1.22192 1.19697 1.21324 0.88859 0.94812 0.95035 1.23119 1.02880 1.05683 0.92425 1.23307 0.97905 0.99259 1.03577 1.20027 0.96403 0.93674 0.95718 1.21416 0.97796 1.00847 0.94729 1.21372 0.99153 0.94004 0.97356 1.21259 0.98349 0.94997 0.99667 1.21017 1.01833 0.86118 0.97648 1.98344 1.92547 1.17470 1.96138 1.20896 1.01444 0.94424 0.96764 0.92866 0.91656 0.92987 0.91614 0.95587 0.93878 0.88123 0.91166 0.88270 0.87698 0.91200 0.85563 0.82397 0.82917 0.85526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.15 8.57 71.98 0.62 -3.53 16 2 C -0.06 -2.39 2.77 -11.54 -0.03 -2.42 16 3 H 0.05 2.31 7.88 -2.39 -0.02 2.29 16 4 C 0.16 7.39 4.55 86.38 0.39 7.79 16 5 N -0.56 -26.66 2.63 -678.03 -1.79 -28.44 16 6 C -0.26 -13.53 8.16 84.04 0.69 -12.85 16 7 H 0.06 2.94 7.08 -2.91 -0.02 2.92 16 8 C -0.03 -1.72 4.93 84.87 0.42 -1.30 16 9 N -0.92 -52.44 11.37 21.65 0.25 -52.19 16 10 Si 0.95 43.91 29.62 68.60 2.03 45.94 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 12 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 13 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 14 C 0.11 4.36 5.12 44.99 0.23 4.59 16 15 C -0.20 -7.72 9.80 30.62 0.30 -7.42 16 16 C -0.20 -7.00 8.80 30.62 0.27 -6.73 16 17 C -0.06 -1.92 4.78 -19.87 -0.09 -2.02 16 18 C -0.13 -3.91 9.67 22.27 0.22 -3.69 16 19 C -0.10 -2.46 10.05 22.26 0.22 -2.23 16 20 C -0.12 -3.01 9.83 22.29 0.22 -2.79 16 21 C -0.04 -1.11 6.32 22.32 0.14 -0.96 16 22 Cl -0.07 -1.85 28.96 -2.72 -0.08 -1.93 16 23 C -0.12 -3.66 8.55 22.29 0.19 -3.47 16 24 H 0.05 1.60 7.37 -2.39 -0.02 1.58 16 25 H 0.06 2.22 5.30 -2.39 -0.01 2.21 16 26 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 27 H 0.07 3.51 5.36 -2.38 -0.01 3.50 16 28 H 0.03 1.14 7.48 -2.39 -0.02 1.12 16 29 H 0.25 14.08 8.32 -92.71 -0.77 13.31 16 30 H 0.10 3.73 8.10 -2.39 -0.02 3.72 16 31 H 0.07 3.08 6.89 -2.39 -0.02 3.07 16 32 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 33 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 34 H 0.07 2.68 8.01 -2.39 -0.02 2.66 16 35 H 0.13 3.68 7.95 -2.91 -0.02 3.65 16 36 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 37 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 38 H 0.13 3.96 7.16 -2.91 -0.02 3.94 16 Total: -1.00 -58.42 323.22 5.24 -53.19 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 1.05 Total: 20.47 kcal Atomic # 6 Polarization: -40.82 SS G_CDS: 3.78 Total: -37.04 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: -1.54 Total: -80.63 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -0.08 Total: -1.93 kcal Total: -58.42 5.24 -53.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275700463.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.666 kcal (2) G-P(sol) polarization free energy of solvation -58.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds