Wall clock time and date at job start Tue Mar 31 2020 01:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.46969 * 2 1 4 4 C 1.53006 * 109.47008 * 119.99995 * 2 1 3 5 5 N 1.46505 * 109.46693 * 295.00246 * 4 2 1 6 6 C 1.36931 * 120.00160 * 90.00343 * 5 4 2 7 7 H 1.08004 * 119.99949 * 304.37717 * 6 5 4 8 8 C 1.38808 * 120.00400 * 124.38242 * 6 5 4 9 9 N 1.31617 * 120.00086 * 165.30503 * 8 6 5 10 10 Si 1.86809 * 119.99862 * 345.30852 * 8 6 5 11 11 H 1.48493 * 109.47184 * 92.65069 * 10 8 6 12 12 H 1.48500 * 109.46818 * 212.65082 * 10 8 6 13 13 H 1.48497 * 109.46742 * 332.64929 * 10 8 6 14 14 C 1.46506 * 119.99770 * 269.99519 * 5 4 2 15 15 C 1.52998 * 117.49554 * 183.06084 * 14 5 4 16 16 C 1.53000 * 60.00058 * 252.51348 * 15 14 5 17 17 C 1.50703 * 109.47257 * 239.99697 * 2 1 3 18 18 C 1.38263 * 119.99383 * 299.72696 * 17 2 1 19 19 C 1.38215 * 120.02454 * 179.76845 * 18 17 2 20 20 C 1.38243 * 120.01273 * 0.50939 * 19 18 17 21 21 C 1.38325 * 119.98481 * 359.74115 * 20 19 18 22 22 Cl 1.73609 * 120.01178 * 180.02562 * 21 20 19 23 23 C 1.38197 * 119.98985 * 120.00434 * 17 2 1 24 24 H 1.08999 * 109.46984 * 60.00395 * 1 2 3 25 25 H 1.09007 * 109.47128 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47628 * 300.00006 * 1 2 3 27 27 H 1.09002 * 109.46859 * 54.99746 * 4 2 1 28 28 H 1.08999 * 109.47122 * 174.99975 * 4 2 1 29 29 H 0.97008 * 119.99557 * 179.97438 * 9 8 6 30 30 H 1.08999 * 115.54807 * 328.77372 * 14 5 4 31 31 H 1.08998 * 117.49844 * 0.02562 * 15 14 5 32 32 H 1.09000 * 117.49215 * 145.02545 * 15 14 5 33 33 H 1.08997 * 117.49863 * 252.51267 * 16 15 14 34 34 H 1.09004 * 117.51696 * 107.48163 * 16 15 14 35 35 H 1.07999 * 119.98989 * 359.97438 * 18 17 2 36 36 H 1.07994 * 119.99636 * 180.25207 * 19 18 17 37 37 H 1.08004 * 120.00316 * 179.72548 * 20 19 18 38 38 H 1.07997 * 120.00805 * 359.97438 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6522 0.0354 2.4424 6 6 0.4578 -0.2242 3.0597 7 1 -0.4630 -0.1724 2.4976 8 6 0.4304 -0.5537 4.4078 9 7 -0.7063 -0.5203 5.0704 10 14 2.0069 -1.0446 5.2816 11 1 2.6243 0.1559 5.9002 12 1 1.6975 -2.0419 6.3375 13 1 2.9517 -1.6380 4.3017 14 6 2.5426 1.0697 2.9752 15 6 2.1147 1.7748 4.2638 16 6 2.0510 2.5178 2.9279 17 6 2.0323 -0.7105 -1.2304 18 6 1.7029 -2.0358 -1.4462 19 6 2.1593 -2.6867 -2.5769 20 6 2.9543 -2.0158 -3.4874 21 6 3.2884 -0.6913 -3.2694 22 17 4.2861 0.1520 -4.4128 23 6 2.8269 -0.0387 -2.1400 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.6052 -1.7198 1.2952 28 1 3.1262 -0.7995 1.2057 29 1 -0.7255 -0.7509 6.0125 30 1 3.6082 0.8948 2.8267 31 1 1.1710 1.4689 4.7154 32 1 2.8989 2.0639 4.9635 33 1 2.7932 3.2956 2.7487 34 1 1.0653 2.7010 2.5000 35 1 1.0860 -2.5618 -0.7327 36 1 1.8984 -3.7207 -2.7470 37 1 3.3145 -2.5259 -4.3687 38 1 3.0875 0.9953 -1.9692 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275700466.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:43 Heat of formation + Delta-G solvation = 60.006498 kcal Electronic energy + Delta-G solvation = -19608.939811 eV Core-core repulsion = 16671.488138 eV Total energy + Delta-G solvation = -2937.451673 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -39.52184 -37.50319 -36.53024 -34.81594 -32.47926 -31.19920 -30.67999 -28.84022 -26.20999 -23.61128 -22.89624 -22.42501 -21.54868 -20.17999 -19.29817 -16.91954 -16.83899 -15.64100 -15.33070 -15.03712 -14.69232 -13.99142 -13.85405 -13.67645 -13.40074 -13.09629 -12.71257 -12.36446 -11.88722 -11.80566 -11.56956 -11.41099 -11.35302 -11.10746 -10.84663 -10.77985 -10.59189 -10.39153 -10.28770 -10.02907 -9.76637 -9.39235 -9.12730 -8.83038 -8.58250 -8.40254 -6.45110 -6.02441 -3.73388 1.23490 1.35150 2.11471 3.37971 3.47267 3.55051 3.71430 4.51223 4.69128 4.86306 4.87816 4.98748 5.21067 5.33200 5.38660 5.42510 5.53379 5.79556 5.85609 5.87352 5.92701 6.06983 6.14016 6.15621 6.26810 6.35927 6.46518 6.47359 6.51355 6.57498 6.60492 6.71943 6.89129 6.95079 7.01443 7.09177 7.30500 8.08001 8.50920 9.00248 9.62107 10.12916 11.05825 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.025736 B = 0.004549 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.700733 B = 6154.348888 C = 6551.425256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.073 4.073 3 H 0.073 0.927 4 C 0.161 3.839 5 N -0.570 5.570 6 C -0.286 4.286 7 H 0.079 0.921 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.883 3.117 11 H -0.271 1.271 12 H -0.306 1.306 13 H -0.271 1.271 14 C 0.109 3.891 15 C -0.199 4.199 16 C -0.213 4.213 17 C -0.045 4.045 18 C -0.110 4.110 19 C -0.107 4.107 20 C -0.127 4.127 21 C -0.033 4.033 22 Cl -0.084 7.084 23 C -0.113 4.113 24 H 0.033 0.967 25 H 0.049 0.951 26 H 0.085 0.915 27 H 0.059 0.941 28 H 0.035 0.965 29 H 0.264 0.736 30 H 0.085 0.915 31 H 0.120 0.880 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.331 -0.906 -14.117 15.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.094 4.094 3 H 0.092 0.908 4 C 0.035 3.965 5 N -0.289 5.289 6 C -0.415 4.415 7 H 0.097 0.903 8 C -0.146 4.146 9 N -0.537 5.537 10 Si 0.712 3.288 11 H -0.197 1.197 12 H -0.234 1.234 13 H -0.196 1.196 14 C 0.001 3.999 15 C -0.237 4.237 16 C -0.254 4.254 17 C -0.046 4.046 18 C -0.128 4.128 19 C -0.125 4.125 20 C -0.146 4.146 21 C -0.059 4.059 22 Cl -0.055 7.055 23 C -0.132 4.132 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.103 0.897 27 H 0.077 0.923 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.138 0.862 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 7.313 -0.900 -14.042 15.858 hybrid contribution 0.916 -0.078 0.462 1.029 sum 8.229 -0.978 -13.580 15.909 Atomic orbital electron populations 1.21847 0.93718 1.01753 1.01845 1.20919 0.97067 0.99429 0.91984 0.90814 1.20973 0.96333 0.94192 0.85015 1.43542 1.19809 1.36593 1.28994 1.18701 0.84570 1.45082 0.93108 0.90325 1.25893 0.96069 0.95016 0.97617 1.69858 1.26015 1.48572 1.09268 0.86820 0.84843 0.78262 0.78890 1.19682 1.23364 1.19579 1.21313 0.92827 0.87025 0.98720 1.23490 1.04226 1.05142 0.90807 1.23351 1.02368 0.97225 1.02420 1.20180 0.94714 0.94006 0.95712 1.21247 0.99702 0.94483 0.97359 1.21094 0.97397 0.99934 0.94100 1.20940 1.00206 0.92791 1.00648 1.20895 0.98571 0.93486 0.92986 1.98351 1.68691 1.78160 1.60295 1.21017 0.98689 1.00502 0.92973 0.94741 0.93178 0.89663 0.92279 0.94643 0.92572 0.89683 0.86230 0.90867 0.91210 0.89265 0.85041 0.85404 0.85560 0.85260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 8.41 37.15 0.31 -1.97 16 2 C -0.07 -1.19 2.77 -91.77 -0.25 -1.44 16 3 H 0.07 1.23 7.88 -51.93 -0.41 0.82 16 4 C 0.16 3.02 4.95 -4.04 -0.02 3.00 16 5 N -0.57 -12.56 1.93 -165.65 -0.32 -12.88 16 6 C -0.29 -7.34 8.27 -15.06 -0.12 -7.46 16 7 H 0.08 2.18 6.02 -52.48 -0.32 1.86 16 8 C 0.06 1.53 3.77 -17.43 -0.07 1.47 16 9 N -0.90 -25.94 13.97 55.49 0.78 -25.17 16 10 Si 0.88 21.58 24.80 -169.99 -4.22 17.36 16 11 H -0.27 -6.37 5.81 56.52 0.33 -6.04 16 12 H -0.31 -7.69 7.11 56.52 0.40 -7.29 16 13 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 14 C 0.11 2.26 5.15 -67.93 -0.35 1.91 16 15 C -0.20 -4.27 6.67 -26.73 -0.18 -4.45 16 16 C -0.21 -4.13 10.36 -26.73 -0.28 -4.40 16 17 C -0.05 -0.64 4.78 -104.63 -0.50 -1.14 16 18 C -0.11 -1.45 8.76 -39.58 -0.35 -1.79 16 19 C -0.11 -1.22 10.05 -39.59 -0.40 -1.61 16 20 C -0.13 -1.45 9.83 -39.55 -0.39 -1.84 16 21 C -0.03 -0.41 6.32 -39.50 -0.25 -0.66 16 22 Cl -0.08 -0.97 28.96 -51.86 -1.50 -2.47 16 23 C -0.11 -1.52 9.46 -39.55 -0.37 -1.90 16 24 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.83 7.40 -51.92 -0.38 0.45 16 26 H 0.08 1.71 5.52 -51.93 -0.29 1.42 16 27 H 0.06 1.14 7.45 -51.93 -0.39 0.75 16 28 H 0.04 0.64 8.07 -51.93 -0.42 0.22 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 31 H 0.12 2.98 5.07 -51.93 -0.26 2.72 16 32 H 0.07 1.45 7.85 -51.93 -0.41 1.04 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 35 H 0.13 1.70 7.16 -52.49 -0.38 1.32 16 36 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 38 H 0.13 1.65 7.95 -52.49 -0.42 1.23 16 LS Contribution 316.57 15.07 4.77 4.77 Total: -1.00 -27.34 316.57 -9.12 -36.46 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -5.41 Total: 4.23 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: -3.21 Total: -22.30 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.46 Total: -38.05 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.22 Total: 17.36 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.50 Total: -2.47 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.34 -9.12 -36.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275700466.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.462 kcal (2) G-P(sol) polarization free energy of solvation -27.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds