Wall clock time and date at job start Tue Mar 31 2020 01:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.46969 * 2 1 4 4 C 1.53006 * 109.47008 * 119.99995 * 2 1 3 5 5 N 1.46505 * 109.46693 * 295.00246 * 4 2 1 6 6 C 1.36931 * 120.00160 * 90.00343 * 5 4 2 7 7 H 1.08004 * 119.99949 * 304.37717 * 6 5 4 8 8 C 1.38808 * 120.00400 * 124.38242 * 6 5 4 9 9 N 1.31617 * 120.00086 * 165.30503 * 8 6 5 10 10 Si 1.86809 * 119.99862 * 345.30852 * 8 6 5 11 11 H 1.48493 * 109.47184 * 92.65069 * 10 8 6 12 12 H 1.48500 * 109.46818 * 212.65082 * 10 8 6 13 13 H 1.48497 * 109.46742 * 332.64929 * 10 8 6 14 14 C 1.46506 * 119.99770 * 269.99519 * 5 4 2 15 15 C 1.52998 * 117.49554 * 183.06084 * 14 5 4 16 16 C 1.53000 * 60.00058 * 252.51348 * 15 14 5 17 17 C 1.50703 * 109.47257 * 239.99697 * 2 1 3 18 18 C 1.38263 * 119.99383 * 299.72696 * 17 2 1 19 19 C 1.38215 * 120.02454 * 179.76845 * 18 17 2 20 20 C 1.38243 * 120.01273 * 0.50939 * 19 18 17 21 21 C 1.38325 * 119.98481 * 359.74115 * 20 19 18 22 22 Cl 1.73609 * 120.01178 * 180.02562 * 21 20 19 23 23 C 1.38197 * 119.98985 * 120.00434 * 17 2 1 24 24 H 1.08999 * 109.46984 * 60.00395 * 1 2 3 25 25 H 1.09007 * 109.47128 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47628 * 300.00006 * 1 2 3 27 27 H 1.09002 * 109.46859 * 54.99746 * 4 2 1 28 28 H 1.08999 * 109.47122 * 174.99975 * 4 2 1 29 29 H 0.97008 * 119.99557 * 179.97438 * 9 8 6 30 30 H 1.08999 * 115.54807 * 328.77372 * 14 5 4 31 31 H 1.08998 * 117.49844 * 0.02562 * 15 14 5 32 32 H 1.09000 * 117.49215 * 145.02545 * 15 14 5 33 33 H 1.08997 * 117.49863 * 252.51267 * 16 15 14 34 34 H 1.09004 * 117.51696 * 107.48163 * 16 15 14 35 35 H 1.07999 * 119.98989 * 359.97438 * 18 17 2 36 36 H 1.07994 * 119.99636 * 180.25207 * 19 18 17 37 37 H 1.08004 * 120.00316 * 179.72548 * 20 19 18 38 38 H 1.07997 * 120.00805 * 359.97438 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6522 0.0354 2.4424 6 6 0.4578 -0.2242 3.0597 7 1 -0.4630 -0.1724 2.4976 8 6 0.4304 -0.5537 4.4078 9 7 -0.7063 -0.5203 5.0704 10 14 2.0069 -1.0446 5.2816 11 1 2.6243 0.1559 5.9002 12 1 1.6975 -2.0419 6.3375 13 1 2.9517 -1.6380 4.3017 14 6 2.5426 1.0697 2.9752 15 6 2.1147 1.7748 4.2638 16 6 2.0510 2.5178 2.9279 17 6 2.0323 -0.7105 -1.2304 18 6 1.7029 -2.0358 -1.4462 19 6 2.1593 -2.6867 -2.5769 20 6 2.9543 -2.0158 -3.4874 21 6 3.2884 -0.6913 -3.2694 22 17 4.2861 0.1520 -4.4128 23 6 2.8269 -0.0387 -2.1400 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.6052 -1.7198 1.2952 28 1 3.1262 -0.7995 1.2057 29 1 -0.7255 -0.7509 6.0125 30 1 3.6082 0.8948 2.8267 31 1 1.1710 1.4689 4.7154 32 1 2.8989 2.0639 4.9635 33 1 2.7932 3.2956 2.7487 34 1 1.0653 2.7010 2.5000 35 1 1.0860 -2.5618 -0.7327 36 1 1.8984 -3.7207 -2.7470 37 1 3.3145 -2.5259 -4.3687 38 1 3.0875 0.9953 -1.9692 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275700466.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:43 Heat of formation + Delta-G solvation = 47.641277 kcal Electronic energy + Delta-G solvation = -19609.476008 eV Core-core repulsion = 16671.488138 eV Total energy + Delta-G solvation = -2937.987869 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.58535 -39.10332 -37.51240 -36.14924 -34.36316 -32.81462 -31.68013 -30.05560 -27.92324 -25.25343 -24.10806 -23.48706 -23.17182 -21.74325 -20.74587 -18.76256 -17.91142 -16.96196 -16.71528 -16.30652 -16.24655 -15.49482 -15.45035 -14.85170 -14.55329 -14.34285 -14.28165 -13.82676 -13.59918 -13.32411 -12.88358 -12.68778 -12.57388 -12.48839 -12.31511 -12.19434 -12.10998 -11.93523 -11.73493 -11.52459 -11.44785 -11.12809 -10.82094 -10.44595 -9.80765 -9.56400 -8.31553 -8.04488 -5.78760 0.25722 0.38177 1.18205 1.43726 1.47495 1.58796 2.50316 2.72748 3.06259 3.19322 3.42945 3.85807 3.93575 4.13183 4.25802 4.27848 4.36030 4.39876 4.45888 4.52415 4.57249 4.58255 4.84278 4.93638 4.97142 4.99786 5.04868 5.11592 5.14574 5.31122 5.34384 5.40661 5.43800 5.57794 5.58864 5.75992 5.92791 6.04907 6.44113 7.16886 7.64812 8.17764 9.01428 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.025736 B = 0.004549 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.700733 B = 6154.348888 C = 6551.425256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.058 4.058 3 H 0.070 0.930 4 C 0.160 3.840 5 N -0.582 5.582 6 C -0.265 4.265 7 H 0.048 0.952 8 C 0.012 3.988 9 N -0.946 5.946 10 Si 0.935 3.065 11 H -0.255 1.255 12 H -0.319 1.319 13 H -0.265 1.265 14 C 0.100 3.900 15 C -0.214 4.214 16 C -0.191 4.191 17 C -0.059 4.059 18 C -0.120 4.120 19 C -0.101 4.101 20 C -0.122 4.122 21 C -0.041 4.041 22 Cl -0.075 7.075 23 C -0.119 4.119 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.262 0.738 30 H 0.113 0.887 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.068 0.932 35 H 0.128 0.872 36 H 0.156 0.844 37 H 0.150 0.850 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.824 -1.069 -16.068 18.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.078 4.078 3 H 0.089 0.911 4 C 0.035 3.965 5 N -0.302 5.302 6 C -0.395 4.395 7 H 0.065 0.935 8 C -0.186 4.186 9 N -0.589 5.589 10 Si 0.762 3.238 11 H -0.180 1.180 12 H -0.248 1.248 13 H -0.190 1.190 14 C -0.007 4.007 15 C -0.252 4.252 16 C -0.231 4.231 17 C -0.060 4.060 18 C -0.138 4.138 19 C -0.119 4.119 20 C -0.140 4.140 21 C -0.067 4.067 22 Cl -0.047 7.047 23 C -0.137 4.137 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.130 0.870 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.125 0.875 34 H 0.087 0.913 35 H 0.146 0.854 36 H 0.174 0.826 37 H 0.168 0.832 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 9.835 -1.048 -16.027 18.834 hybrid contribution 0.120 -0.006 0.917 0.925 sum 9.955 -1.054 -15.110 18.125 Atomic orbital electron populations 1.21711 0.94759 1.01213 1.00653 1.20604 0.96009 0.99156 0.92048 0.91112 1.21052 0.97133 0.93662 0.84646 1.43634 1.18944 1.37735 1.29846 1.18541 0.85188 1.42997 0.92744 0.93508 1.26405 0.98156 0.95622 0.98443 1.69973 1.28121 1.51334 1.09435 0.85992 0.82036 0.78019 0.77731 1.18007 1.24815 1.18951 1.21561 0.93739 0.87280 0.98109 1.23400 1.03189 1.06823 0.91812 1.23305 1.02199 0.97432 1.00207 1.19917 0.96196 0.94533 0.95346 1.21337 0.99990 0.94220 0.98221 1.21383 0.96427 1.01128 0.92992 1.21274 0.99216 0.92353 1.01164 1.21010 0.98722 0.94063 0.92927 1.98355 1.68385 1.78104 1.59809 1.21040 0.98681 1.00759 0.93257 0.93286 0.93416 0.93286 0.93311 0.93135 0.92939 0.86954 0.90017 0.88836 0.87544 0.91309 0.85404 0.82621 0.83183 0.84964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.36 8.41 71.98 0.61 -3.75 16 2 C -0.06 -1.83 2.77 -11.54 -0.03 -1.86 16 3 H 0.07 2.28 7.88 -2.39 -0.02 2.26 16 4 C 0.16 5.87 4.95 86.38 0.43 6.30 16 5 N -0.58 -25.39 1.93 -678.00 -1.31 -26.70 16 6 C -0.27 -13.97 8.27 84.03 0.69 -13.28 16 7 H 0.05 2.76 6.02 -2.91 -0.02 2.74 16 8 C 0.01 0.65 3.77 84.86 0.32 0.97 16 9 N -0.95 -56.93 13.97 21.65 0.30 -56.62 16 10 Si 0.93 44.75 24.80 68.60 1.70 46.45 16 11 H -0.26 -11.44 5.81 99.48 0.58 -10.87 16 12 H -0.32 -15.87 7.11 99.48 0.71 -15.16 16 13 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 14 C 0.10 3.96 5.15 44.99 0.23 4.19 16 15 C -0.21 -8.91 6.67 30.59 0.20 -8.71 16 16 C -0.19 -7.04 10.36 30.59 0.32 -6.72 16 17 C -0.06 -1.59 4.78 -19.87 -0.09 -1.69 16 18 C -0.12 -2.93 8.76 22.27 0.20 -2.74 16 19 C -0.10 -1.99 10.05 22.27 0.22 -1.77 16 20 C -0.12 -2.37 9.83 22.29 0.22 -2.15 16 21 C -0.04 -0.91 6.32 22.32 0.14 -0.77 16 22 Cl -0.08 -1.55 28.96 -2.72 -0.08 -1.63 16 23 C -0.12 -2.95 9.46 22.29 0.21 -2.74 16 24 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.05 1.62 7.40 -2.38 -0.02 1.61 16 26 H 0.05 2.05 5.52 -2.39 -0.01 2.03 16 27 H 0.05 1.87 7.45 -2.39 -0.02 1.85 16 28 H 0.05 1.71 8.07 -2.39 -0.02 1.69 16 29 H 0.26 15.09 8.31 -92.70 -0.77 14.32 16 30 H 0.11 3.87 8.14 -2.39 -0.02 3.86 16 31 H 0.08 4.11 5.07 -2.39 -0.01 4.10 16 32 H 0.09 3.47 7.85 -2.39 -0.02 3.45 16 33 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 34 H 0.07 2.82 8.14 -2.38 -0.02 2.80 16 35 H 0.13 3.18 7.16 -2.91 -0.02 3.16 16 36 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 37 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 38 H 0.13 3.12 7.95 -2.91 -0.02 3.10 16 Total: -1.00 -60.10 316.57 5.20 -54.90 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.92 Total: 18.31 kcal Atomic # 6 Polarization: -38.37 SS G_CDS: 3.66 Total: -34.71 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -1.01 Total: -83.33 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.70 Total: 46.45 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -0.08 Total: -1.63 kcal Total: -60.10 5.20 -54.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275700466.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.543 kcal (2) G-P(sol) polarization free energy of solvation -60.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds