Wall clock time and date at job start Tue Mar 31 2020 01:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47232 * 2 1 4 4 C 1.53002 * 109.47378 * 120.00442 * 2 1 3 5 5 C 1.50694 * 109.47279 * 184.99547 * 4 2 1 6 6 H 1.07999 * 120.00092 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00076 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00253 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00024 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47083 * 89.99969 * 9 7 5 11 11 H 1.48493 * 109.47233 * 210.00025 * 9 7 5 12 12 H 1.48496 * 109.47050 * 330.00164 * 9 7 5 13 13 N 1.46910 * 109.46992 * 240.00331 * 2 1 3 14 14 C 1.47161 * 110.99748 * 60.00081 * 13 2 1 15 15 C 1.52890 * 108.67536 * 165.41002 * 14 13 2 16 16 C 1.50724 * 109.96756 * 50.21826 * 15 14 13 17 17 C 1.38791 * 118.48702 * 163.28180 * 16 15 14 18 18 Cl 1.73590 * 119.84223 * 359.83380 * 17 16 15 19 19 C 1.38153 * 120.31787 * 179.84784 * 17 16 15 20 20 C 1.38247 * 119.81493 * 359.96638 * 19 17 16 21 21 C 1.38022 * 119.88214 * 0.07774 * 20 19 17 22 22 C 1.37810 * 121.66799 * 343.23697 * 16 15 14 23 23 C 1.46547 * 111.12831 * 296.86368 * 13 2 1 24 24 H 1.08999 * 109.47233 * 59.99779 * 1 2 3 25 25 H 1.09005 * 109.47081 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46622 * 299.99747 * 1 2 3 27 27 H 1.08993 * 109.46873 * 305.00368 * 4 2 1 28 28 H 1.09005 * 109.46633 * 64.99748 * 4 2 1 29 29 H 0.97006 * 120.00516 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.63241 * 45.60417 * 14 13 2 31 31 H 1.09005 * 109.62942 * 285.21541 * 14 13 2 32 32 H 1.08998 * 109.39275 * 170.37019 * 15 14 13 33 33 H 1.09000 * 109.38923 * 290.17290 * 15 14 13 34 34 H 1.07998 * 120.09411 * 179.97438 * 19 17 16 35 35 H 1.07998 * 120.05905 * 180.02562 * 20 19 17 36 36 H 1.07996 * 119.79621 * 179.97438 * 21 20 19 37 37 H 1.09004 * 109.12418 * 55.49721 * 23 13 2 38 38 H 1.08996 * 109.17077 * 296.09535 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5420 -0.6151 1.3126 6 1 4.0790 -0.0856 0.5395 7 6 4.2304 -1.1929 2.3581 8 7 5.5410 -1.0998 2.4137 9 14 3.3015 -2.1081 3.6957 10 1 3.1709 -3.5382 3.3178 11 1 4.0448 -2.0005 4.9767 12 1 1.9505 -1.5130 3.8559 13 7 2.0197 -0.6925 -1.1996 14 6 1.5478 -0.0250 -2.4233 15 6 2.3617 -0.5441 -3.6089 16 6 2.3770 -2.0512 -3.6024 17 6 2.7510 -2.7145 -4.7627 18 17 3.1824 -1.8048 -6.1769 19 6 2.7814 -4.0952 -4.7979 20 6 2.4381 -4.8192 -3.6713 21 6 2.0652 -4.1599 -2.5174 22 6 2.0321 -2.7734 -2.4805 23 6 1.6134 -2.1005 -1.1995 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.6055 -0.2619 2.1369 28 1 1.7517 -1.7716 1.2054 29 1 6.0255 -1.5066 3.1491 30 1 1.6845 1.0522 -2.3288 31 1 0.4921 -0.2480 -2.5781 32 1 1.9137 -0.1908 -4.5377 33 1 3.3840 -0.1731 -3.5362 34 1 3.0726 -4.6076 -5.7029 35 1 2.4608 -5.8987 -3.6942 36 1 1.7969 -4.7269 -1.6383 37 1 0.5296 -2.1594 -1.0991 38 1 2.0815 -2.6081 -0.3562 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276334493.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:52 Heat of formation + Delta-G solvation = 17.432132 kcal Electronic energy + Delta-G solvation = -19875.850449 eV Core-core repulsion = 16936.552613 eV Total energy + Delta-G solvation = -2939.297836 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.09286 -37.78170 -36.35243 -34.00314 -32.34725 -31.75111 -30.02379 -28.64167 -27.85922 -24.84658 -23.54814 -22.38248 -22.02796 -20.07701 -18.51627 -16.87367 -16.57881 -15.72140 -15.57024 -14.85470 -14.60314 -14.32292 -14.05854 -13.60379 -13.18703 -13.12241 -12.76822 -12.51139 -12.24084 -12.00606 -11.93721 -11.61735 -11.55305 -11.45778 -11.19234 -10.88192 -10.79143 -10.64146 -10.39318 -10.04066 -9.76501 -9.54018 -9.08222 -8.54101 -8.48259 -8.45176 -7.59422 -5.93162 -3.88209 1.26353 1.39690 2.20999 3.32055 3.40894 3.42176 3.70813 4.37216 4.51095 4.78328 4.79191 5.06537 5.22115 5.38510 5.39302 5.45353 5.53115 5.55571 5.67728 5.73382 5.80817 5.83178 5.89621 5.99504 6.00935 6.17710 6.32859 6.35335 6.39294 6.45820 6.50713 6.65726 6.72566 6.92556 7.08620 7.27851 7.68088 7.76164 7.90518 8.68862 9.20406 9.69139 11.20704 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020082 B = 0.005293 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.945385 B = 5288.348200 C = 5674.072657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.096 3.904 3 H 0.081 0.919 4 C -0.010 4.010 5 C -0.494 4.494 6 H 0.080 0.920 7 C 0.063 3.937 8 N -0.905 5.905 9 Si 0.870 3.130 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.268 1.268 13 N -0.504 5.504 14 C 0.050 3.950 15 C -0.077 4.077 16 C -0.056 4.056 17 C -0.038 4.038 18 Cl -0.078 7.078 19 C -0.119 4.119 20 C -0.114 4.114 21 C -0.112 4.112 22 C -0.051 4.051 23 C 0.089 3.911 24 H 0.046 0.954 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.020 0.980 28 H 0.012 0.988 29 H 0.260 0.740 30 H 0.077 0.923 31 H 0.031 0.969 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.045 0.955 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.927 -3.769 -13.747 17.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.012 4.012 3 H 0.099 0.901 4 C -0.047 4.047 5 C -0.532 4.532 6 H 0.098 0.902 7 C -0.137 4.137 8 N -0.545 5.545 9 Si 0.698 3.302 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.193 1.193 13 N -0.227 5.227 14 C -0.078 4.078 15 C -0.114 4.114 16 C -0.057 4.057 17 C -0.064 4.064 18 Cl -0.049 7.049 19 C -0.138 4.138 20 C -0.132 4.132 21 C -0.130 4.130 22 C -0.052 4.052 23 C -0.038 4.038 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.038 0.962 28 H 0.030 0.970 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.049 0.951 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.062 0.938 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.207 -3.699 -13.745 16.953 hybrid contribution -1.106 -0.658 0.648 1.441 sum -10.313 -4.358 -13.098 17.231 Atomic orbital electron populations 1.22585 0.99632 1.01310 1.01297 1.21753 0.89899 0.98837 0.90719 0.90113 1.19749 0.98172 0.94949 0.91862 1.21052 0.89274 1.34177 1.08743 0.90179 1.25010 0.94640 0.96288 0.97719 1.69909 1.06416 1.45943 1.32239 0.86940 0.80469 0.80605 0.82183 1.20560 1.21562 1.19268 1.62306 1.58575 1.00656 1.01159 1.22130 0.95937 0.99160 0.90584 1.20608 1.02390 0.90177 0.98242 1.19450 0.98567 0.96534 0.91138 1.20869 1.05053 0.92004 0.88473 1.98336 1.91663 1.75099 1.39842 1.20892 1.01769 0.91707 0.99444 1.20941 0.99969 0.99801 0.92519 1.21183 0.99676 0.93761 0.98428 1.19742 0.97671 0.93265 0.94503 1.21052 0.97691 0.90349 0.94736 0.93473 0.93019 0.92297 0.96221 0.96990 0.93022 0.90407 0.95053 0.90521 0.89253 0.85412 0.85376 0.85451 0.93758 0.87643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.90 8.52 37.16 0.32 -2.58 16 2 C 0.10 1.80 2.32 -67.70 -0.16 1.65 16 3 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 4 C -0.01 -0.23 3.21 -27.88 -0.09 -0.32 16 5 C -0.49 -13.70 9.39 -34.44 -0.32 -14.02 16 6 H 0.08 2.46 7.99 -52.49 -0.42 2.04 16 7 C 0.06 1.83 5.47 -17.82 -0.10 1.73 16 8 N -0.91 -27.99 13.96 55.43 0.77 -27.21 16 9 Si 0.87 21.42 27.47 -169.99 -4.67 16.75 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 13 N -0.50 -9.23 4.42 -228.27 -1.01 -10.24 16 14 C 0.05 0.75 4.68 -3.74 -0.02 0.74 16 15 C -0.08 -1.12 5.26 -27.93 -0.15 -1.26 16 16 C -0.06 -0.86 5.78 -104.56 -0.60 -1.46 16 17 C -0.04 -0.53 6.31 -39.41 -0.25 -0.77 16 18 Cl -0.08 -0.98 27.39 -51.86 -1.42 -2.40 16 19 C -0.12 -1.50 9.82 -39.61 -0.39 -1.89 16 20 C -0.11 -1.39 10.05 -39.66 -0.40 -1.79 16 21 C -0.11 -1.56 9.65 -39.47 -0.38 -1.94 16 22 C -0.05 -0.82 5.79 -104.63 -0.61 -1.42 16 23 C 0.09 1.53 4.46 -5.20 -0.02 1.51 16 24 H 0.05 0.64 6.75 -51.93 -0.35 0.29 16 25 H 0.05 0.77 6.38 -51.93 -0.33 0.44 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 28 H 0.01 0.27 5.60 -51.93 -0.29 -0.02 16 29 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.08 1.10 8.00 -51.93 -0.42 0.69 16 31 H 0.03 0.44 7.09 -51.93 -0.37 0.07 16 32 H 0.08 0.97 7.36 -51.93 -0.38 0.58 16 33 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.04 0.70 6.15 -51.93 -0.32 0.38 16 38 H 0.11 2.05 6.35 -51.93 -0.33 1.72 16 LS Contribution 310.44 15.07 4.68 4.68 Total: -1.00 -30.32 310.44 -10.10 -40.41 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -5.28 Total: -0.14 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: -3.17 Total: -21.85 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: -0.24 Total: -37.45 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.42 Total: -2.40 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.32 -10.10 -40.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276334493.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.847 kcal (2) G-P(sol) polarization free energy of solvation -30.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds