Wall clock time and date at job start Tue Mar 31 2020 01:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47232 * 2 1 4 4 C 1.53002 * 109.47378 * 120.00442 * 2 1 3 5 5 C 1.50694 * 109.47279 * 184.99547 * 4 2 1 6 6 H 1.07999 * 120.00092 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00076 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00253 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00024 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47083 * 89.99969 * 9 7 5 11 11 H 1.48493 * 109.47233 * 210.00025 * 9 7 5 12 12 H 1.48496 * 109.47050 * 330.00164 * 9 7 5 13 13 N 1.46910 * 109.46992 * 240.00331 * 2 1 3 14 14 C 1.47161 * 110.99748 * 60.00081 * 13 2 1 15 15 C 1.52890 * 108.67536 * 165.41002 * 14 13 2 16 16 C 1.50724 * 109.96756 * 50.21826 * 15 14 13 17 17 C 1.38791 * 118.48702 * 163.28180 * 16 15 14 18 18 Cl 1.73590 * 119.84223 * 359.83380 * 17 16 15 19 19 C 1.38153 * 120.31787 * 179.84784 * 17 16 15 20 20 C 1.38247 * 119.81493 * 359.96638 * 19 17 16 21 21 C 1.38022 * 119.88214 * 0.07774 * 20 19 17 22 22 C 1.37810 * 121.66799 * 343.23697 * 16 15 14 23 23 C 1.46547 * 111.12831 * 296.86368 * 13 2 1 24 24 H 1.08999 * 109.47233 * 59.99779 * 1 2 3 25 25 H 1.09005 * 109.47081 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46622 * 299.99747 * 1 2 3 27 27 H 1.08993 * 109.46873 * 305.00368 * 4 2 1 28 28 H 1.09005 * 109.46633 * 64.99748 * 4 2 1 29 29 H 0.97006 * 120.00516 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.63241 * 45.60417 * 14 13 2 31 31 H 1.09005 * 109.62942 * 285.21541 * 14 13 2 32 32 H 1.08998 * 109.39275 * 170.37019 * 15 14 13 33 33 H 1.09000 * 109.38923 * 290.17290 * 15 14 13 34 34 H 1.07998 * 120.09411 * 179.97438 * 19 17 16 35 35 H 1.07998 * 120.05905 * 180.02562 * 20 19 17 36 36 H 1.07996 * 119.79621 * 179.97438 * 21 20 19 37 37 H 1.09004 * 109.12418 * 55.49721 * 23 13 2 38 38 H 1.08996 * 109.17077 * 296.09535 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5420 -0.6151 1.3126 6 1 4.0790 -0.0856 0.5395 7 6 4.2304 -1.1929 2.3581 8 7 5.5410 -1.0998 2.4137 9 14 3.3015 -2.1081 3.6957 10 1 3.1709 -3.5382 3.3178 11 1 4.0448 -2.0005 4.9767 12 1 1.9505 -1.5130 3.8559 13 7 2.0197 -0.6925 -1.1996 14 6 1.5478 -0.0250 -2.4233 15 6 2.3617 -0.5441 -3.6089 16 6 2.3770 -2.0512 -3.6024 17 6 2.7510 -2.7145 -4.7627 18 17 3.1824 -1.8048 -6.1769 19 6 2.7814 -4.0952 -4.7979 20 6 2.4381 -4.8192 -3.6713 21 6 2.0652 -4.1599 -2.5174 22 6 2.0321 -2.7734 -2.4805 23 6 1.6134 -2.1005 -1.1995 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.6055 -0.2619 2.1369 28 1 1.7517 -1.7716 1.2054 29 1 6.0255 -1.5066 3.1491 30 1 1.6845 1.0522 -2.3288 31 1 0.4921 -0.2480 -2.5781 32 1 1.9137 -0.1908 -4.5377 33 1 3.3840 -0.1731 -3.5362 34 1 3.0726 -4.6076 -5.7029 35 1 2.4608 -5.8987 -3.6942 36 1 1.7969 -4.7269 -1.6383 37 1 0.5296 -2.1594 -1.0991 38 1 2.0815 -2.6081 -0.3562 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276334493.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:51 Heat of formation + Delta-G solvation = -0.038495 kcal Electronic energy + Delta-G solvation = -19876.608032 eV Core-core repulsion = 16936.552613 eV Total energy + Delta-G solvation = -2940.055419 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.25199 -39.04598 -37.38324 -35.49627 -34.21710 -32.94978 -31.43087 -29.82684 -29.49313 -26.09828 -25.04354 -23.90625 -23.12867 -21.48932 -19.82631 -18.76954 -17.97388 -16.95542 -16.73076 -16.22450 -16.00684 -15.80170 -15.38081 -14.79354 -14.72411 -14.35579 -14.17564 -13.94780 -13.89185 -13.30593 -13.17956 -13.05906 -12.80762 -12.62747 -12.54143 -12.25419 -12.11910 -11.90914 -11.72408 -11.69605 -11.38746 -11.32230 -11.08223 -10.66041 -9.63026 -9.55690 -8.91230 -8.16128 -6.15737 0.20430 0.33469 1.17551 1.37242 1.39626 1.50142 2.42535 2.64621 3.03776 3.22725 3.67363 3.72395 4.04880 4.08356 4.16673 4.31932 4.34536 4.41660 4.42559 4.55824 4.57569 4.64657 4.76878 4.78409 4.87153 4.95491 5.03322 5.08885 5.15549 5.20400 5.26536 5.30536 5.42000 5.56579 5.61815 5.75939 5.87908 6.34643 6.36682 6.54065 6.93351 7.45173 9.01440 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020082 B = 0.005293 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.945385 B = 5288.348200 C = 5674.072657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.098 3.902 3 H 0.065 0.935 4 C -0.007 4.007 5 C -0.490 4.490 6 H 0.033 0.967 7 C -0.002 4.002 8 N -0.959 5.959 9 Si 0.942 3.058 10 H -0.270 1.270 11 H -0.291 1.291 12 H -0.245 1.245 13 N -0.534 5.534 14 C 0.054 3.946 15 C -0.073 4.073 16 C -0.075 4.075 17 C -0.049 4.049 18 Cl -0.069 7.069 19 C -0.117 4.117 20 C -0.108 4.108 21 C -0.122 4.122 22 C -0.077 4.077 23 C 0.096 3.904 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.023 0.977 28 H 0.020 0.980 29 H 0.260 0.740 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.153 0.847 35 H 0.162 0.838 36 H 0.139 0.861 37 H 0.060 0.940 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.245 -5.165 -14.478 19.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.010 4.010 3 H 0.084 0.916 4 C -0.044 4.044 5 C -0.529 4.529 6 H 0.051 0.949 7 C -0.197 4.197 8 N -0.601 5.601 9 Si 0.766 3.234 10 H -0.195 1.195 11 H -0.217 1.217 12 H -0.168 1.168 13 N -0.258 5.258 14 C -0.074 4.074 15 C -0.110 4.110 16 C -0.076 4.076 17 C -0.075 4.075 18 Cl -0.040 7.040 19 C -0.136 4.136 20 C -0.126 4.126 21 C -0.140 4.140 22 C -0.078 4.078 23 C -0.031 4.031 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.041 0.959 28 H 0.039 0.961 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.114 0.886 33 H 0.088 0.912 34 H 0.171 0.829 35 H 0.179 0.821 36 H 0.157 0.843 37 H 0.078 0.922 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.554 -5.085 -14.496 19.222 hybrid contribution -0.298 -0.200 0.750 0.831 sum -11.851 -5.286 -13.746 18.904 Atomic orbital electron populations 1.22434 0.96267 1.02162 1.02749 1.21550 0.92485 0.97388 0.89544 0.91636 1.19686 0.94591 0.96004 0.94143 1.21277 0.91987 1.32570 1.07035 0.94899 1.25948 0.95438 0.97624 1.00700 1.70093 1.08566 1.47952 1.33517 0.85789 0.79817 0.79462 0.78334 1.19513 1.21714 1.16836 1.62188 1.60020 1.01562 1.02024 1.22153 0.96798 0.99116 0.89286 1.20566 1.01341 0.90187 0.98879 1.19572 0.99503 0.96815 0.91757 1.21026 1.05153 0.92841 0.88498 1.98335 1.91570 1.75058 1.39073 1.21273 1.00539 0.91216 1.00546 1.21327 0.98265 1.01459 0.91503 1.21431 0.99712 0.93180 0.99709 1.19801 0.99454 0.94316 0.94196 1.20892 0.98245 0.89467 0.94513 0.91433 0.92382 0.91474 0.95872 0.96144 0.93111 0.89970 0.93401 0.88616 0.91207 0.82892 0.82072 0.84341 0.92248 0.90761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.01 8.52 71.98 0.61 -4.39 16 2 C 0.10 3.68 2.32 44.92 0.10 3.78 16 3 H 0.07 2.60 8.10 -2.39 -0.02 2.58 16 4 C -0.01 -0.31 3.21 29.85 0.10 -0.21 16 5 C -0.49 -28.08 9.39 25.60 0.24 -27.84 16 6 H 0.03 2.14 7.99 -2.91 -0.02 2.11 16 7 C 0.00 -0.13 5.47 84.65 0.46 0.33 16 8 N -0.96 -61.49 13.96 21.45 0.30 -61.19 16 9 Si 0.94 44.35 27.47 68.60 1.88 46.23 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 12 H -0.24 -10.53 6.54 99.48 0.65 -9.88 16 13 N -0.53 -19.66 4.42 -876.10 -3.87 -23.54 16 14 C 0.05 1.59 4.68 86.22 0.40 1.99 16 15 C -0.07 -2.08 5.26 29.82 0.16 -1.93 16 16 C -0.08 -2.28 5.78 -19.83 -0.11 -2.39 16 17 C -0.05 -1.29 6.31 22.38 0.14 -1.15 16 18 Cl -0.07 -1.64 27.39 -2.72 -0.07 -1.72 16 19 C -0.12 -2.65 9.82 22.25 0.22 -2.43 16 20 C -0.11 -2.34 10.05 22.22 0.22 -2.12 16 21 C -0.12 -3.23 9.65 22.34 0.22 -3.01 16 22 C -0.08 -2.42 5.79 -19.87 -0.12 -2.53 16 23 C 0.10 3.29 4.46 85.60 0.38 3.67 16 24 H 0.07 1.64 6.75 -2.39 -0.02 1.62 16 25 H 0.06 1.57 6.38 -2.38 -0.02 1.55 16 26 H 0.07 1.78 8.14 -2.39 -0.02 1.77 16 27 H 0.02 1.03 7.20 -2.39 -0.02 1.01 16 28 H 0.02 0.90 5.60 -2.38 -0.01 0.89 16 29 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16 30 H 0.08 2.29 8.00 -2.39 -0.02 2.27 16 31 H 0.05 1.25 7.09 -2.38 -0.02 1.23 16 32 H 0.10 2.31 7.36 -2.39 -0.02 2.29 16 33 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 35 H 0.16 2.39 8.06 -2.91 -0.02 2.36 16 36 H 0.14 3.23 8.06 -2.91 -0.02 3.20 16 37 H 0.06 1.78 6.15 -2.38 -0.01 1.77 16 38 H 0.07 2.94 6.35 -2.39 -0.02 2.92 16 Total: -1.00 -67.75 310.44 2.26 -65.49 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 1.00 Total: 12.95 kcal Atomic # 6 Polarization: -41.25 SS G_CDS: 3.03 Total: -38.23 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -3.58 Total: -84.73 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.88 Total: 46.23 kcal Atomic # 17 Polarization: -1.64 SS G_CDS: -0.07 Total: -1.72 kcal Total: -67.75 2.26 -65.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276334493.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.451 kcal (2) G-P(sol) polarization free energy of solvation -67.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds