Wall clock time and date at job start Tue Mar 31 2020 00:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.45842 * 2 1 4 4 C 1.38248 * 119.98266 * 119.72829 * 3 2 1 5 5 C 1.38216 * 120.00933 * 179.72699 * 4 3 2 6 6 C 1.38356 * 119.98561 * 0.54649 * 5 4 3 7 7 Cl 1.73597 * 120.01016 * 179.70451 * 6 5 4 8 8 C 1.38353 * 119.97332 * 359.72580 * 6 5 4 9 9 C 1.38216 * 119.98912 * 0.02562 * 8 6 5 10 10 C 1.53042 * 109.46181 * 240.02802 * 2 1 3 11 11 C 1.53165 * 109.32630 * 301.36258 * 10 2 1 12 12 N 1.46933 * 108.76658 * 305.34932 * 11 10 2 13 13 C 1.36934 * 120.63317 * 233.63567 * 12 11 10 14 14 H 1.08000 * 120.00142 * 151.81376 * 13 12 11 15 15 C 1.38814 * 119.99848 * 331.81235 * 13 12 11 16 16 N 1.31613 * 120.00102 * 343.08096 * 15 13 12 17 17 Si 1.86800 * 119.99879 * 163.08200 * 15 13 12 18 18 H 1.48504 * 109.47098 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47341 * 120.00175 * 17 15 13 20 20 H 1.48505 * 109.46923 * 240.00008 * 17 15 13 21 21 C 1.46929 * 118.73460 * 53.61558 * 12 11 10 22 22 C 1.53042 * 109.45850 * 119.97392 * 2 1 3 23 23 H 1.08999 * 109.47198 * 60.00268 * 1 2 3 24 24 H 1.08994 * 109.47391 * 299.99986 * 1 2 3 25 25 H 1.09004 * 109.47316 * 179.97438 * 1 2 3 26 26 H 1.07999 * 119.99280 * 359.97438 * 4 3 2 27 27 H 1.07998 * 120.00596 * 180.26848 * 5 4 3 28 28 H 1.08002 * 120.00603 * 179.97438 * 8 6 5 29 29 H 1.07994 * 119.99317 * 180.02562 * 9 8 6 30 30 H 1.09003 * 109.49815 * 61.29377 * 10 2 1 31 31 H 1.08996 * 109.49688 * 181.39196 * 10 2 1 32 32 H 1.09000 * 109.58719 * 185.56991 * 11 10 2 33 33 H 1.08994 * 109.71489 * 65.20601 * 11 10 2 34 34 H 0.97000 * 120.00198 * 180.02562 * 16 15 13 35 35 H 1.09003 * 109.58464 * 186.60311 * 21 12 11 36 36 H 1.08996 * 109.70388 * 66.24640 * 21 12 11 37 37 H 1.08997 * 109.49681 * 178.60773 * 22 2 1 38 38 H 1.09000 * 109.49374 * 298.67090 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0320 1.4209 0.0000 4 6 2.8221 1.8746 1.0399 5 6 3.2875 3.1760 1.0376 6 6 2.9532 4.0281 0.0001 7 17 3.5310 5.6651 0.0005 8 6 2.1578 3.5751 -1.0374 9 6 1.6973 2.2720 -1.0367 10 6 2.0399 -0.7209 -1.2500 11 6 1.4995 -2.1540 -1.2646 12 7 1.8626 -2.8089 -0.0004 13 6 2.5269 -4.0063 -0.0005 14 1 3.1751 -4.2643 0.8239 15 6 2.3673 -4.8884 -1.0604 16 7 1.3527 -4.7476 -1.8867 17 14 3.5926 -6.2755 -1.3137 18 1 4.6338 -6.2155 -0.2565 19 1 2.8863 -7.5796 -1.2401 20 1 4.2323 -6.1336 -2.6464 21 6 1.4995 -2.1544 1.2640 22 6 2.0398 -0.7209 1.2500 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 3.0789 1.2107 1.8521 27 1 3.9082 3.5290 1.8478 28 1 1.8962 4.2400 -1.8474 29 1 1.0768 1.9182 -1.8467 30 1 1.6958 -0.1937 -2.1399 31 1 3.1296 -0.7429 -1.2382 32 1 1.9382 -2.7014 -2.0988 33 1 0.4147 -2.1368 -1.3688 34 1 1.2409 -5.3642 -2.6271 35 1 1.9382 -2.7021 2.0981 36 1 0.4149 -2.1350 1.3695 37 1 3.1295 -0.7430 1.2383 38 1 1.6962 -0.1934 2.1398 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279251179.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:08 Heat of formation + Delta-G solvation = 28.240950 kcal Electronic energy + Delta-G solvation = -19800.170834 eV Core-core repulsion = 16861.341704 eV Total energy + Delta-G solvation = -2938.829131 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.03189 -37.78790 -36.38474 -34.02564 -31.48870 -31.15264 -29.89193 -29.16180 -27.08911 -24.85808 -23.26616 -22.74750 -21.46540 -20.65838 -18.12512 -17.29298 -16.49402 -15.31171 -15.23973 -14.72618 -14.31596 -14.00326 -13.60552 -13.53425 -13.41301 -13.16763 -13.00798 -12.74297 -11.98550 -11.66762 -11.48285 -11.42833 -11.21781 -11.17299 -10.87865 -10.76278 -10.62464 -10.55956 -10.18264 -10.14889 -9.81621 -9.50846 -9.47077 -8.99911 -8.51668 -8.36103 -6.64563 -5.78733 -3.20683 1.21394 1.33004 2.10142 3.36938 3.45213 3.47192 3.68898 4.49925 4.77802 4.88909 4.89442 5.24949 5.35156 5.40085 5.44299 5.49828 5.59592 5.61036 5.85111 5.96641 6.07942 6.11337 6.13233 6.22779 6.23476 6.36018 6.43557 6.51021 6.59270 6.68441 6.70223 6.79636 6.85859 6.95732 7.00095 7.38106 7.67933 7.80468 8.45814 9.22208 9.85759 10.42585 11.29705 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.034040 B = 0.003882 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.371939 B = 7210.767565 C = 7283.773700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.017 4.017 3 C -0.049 4.049 4 C -0.110 4.110 5 C -0.110 4.110 6 C -0.048 4.048 7 Cl -0.085 7.085 8 C -0.111 4.111 9 C -0.105 4.105 10 C -0.125 4.125 11 C 0.171 3.829 12 N -0.591 5.591 13 C -0.251 4.251 14 H 0.065 0.935 15 C 0.002 3.998 16 N -0.903 5.903 17 Si 0.900 3.100 18 H -0.278 1.278 19 H -0.291 1.291 20 H -0.289 1.289 21 C 0.145 3.855 22 C -0.125 4.125 23 H 0.049 0.951 24 H 0.046 0.954 25 H 0.075 0.925 26 H 0.136 0.864 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.131 0.869 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.022 0.978 34 H 0.253 0.747 35 H 0.052 0.948 36 H 0.021 0.979 37 H 0.061 0.939 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.704 16.365 3.475 16.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.017 4.017 3 C -0.049 4.049 4 C -0.128 4.128 5 C -0.129 4.129 6 C -0.074 4.074 7 Cl -0.057 7.057 8 C -0.129 4.129 9 C -0.123 4.123 10 C -0.165 4.165 11 C 0.045 3.955 12 N -0.314 5.314 13 C -0.381 4.381 14 H 0.083 0.917 15 C -0.196 4.196 16 N -0.547 5.547 17 Si 0.730 3.270 18 H -0.203 1.203 19 H -0.218 1.218 20 H -0.216 1.216 21 C 0.018 3.982 22 C -0.164 4.164 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.094 0.906 26 H 0.154 0.846 27 H 0.146 0.854 28 H 0.146 0.854 29 H 0.149 0.851 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.040 0.960 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.039 0.961 37 H 0.079 0.921 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.716 16.386 3.344 16.739 hybrid contribution 0.705 -0.468 -0.257 0.884 sum 1.421 15.918 3.087 16.277 Atomic orbital electron populations 1.21940 0.93957 1.03057 1.00555 1.19496 0.95492 0.88947 0.97802 1.20332 0.95024 0.96262 0.93256 1.21247 0.97634 0.94762 0.99203 1.21030 1.00629 0.93535 0.97709 1.20862 1.02104 0.86022 0.98425 1.98346 1.88066 1.20710 1.98539 1.20993 0.97826 0.96452 0.97658 1.21018 1.00054 0.92396 0.98865 1.22274 1.00599 0.99346 0.94249 1.20802 0.96615 0.87704 0.90349 1.44039 1.66767 1.21153 0.99459 1.19226 1.18904 0.93380 1.06544 0.91738 1.25026 0.97095 0.97508 0.99989 1.70031 1.27890 1.38594 1.18221 0.86259 0.81025 0.81940 0.77768 1.20281 1.21760 1.21598 1.20934 0.96433 0.90663 0.90153 1.22168 1.00649 0.98223 0.95354 0.93231 0.93490 0.90605 0.84588 0.85396 0.85391 0.85148 0.93223 0.92620 0.89604 0.95979 0.93733 0.92970 0.96139 0.92066 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 7.53 37.16 0.28 -1.82 16 2 C -0.02 -0.27 0.60 -155.62 -0.09 -0.37 16 3 C -0.05 -0.68 4.76 -104.62 -0.50 -1.18 16 4 C -0.11 -1.44 8.98 -39.59 -0.36 -1.80 16 5 C -0.11 -1.33 9.83 -39.55 -0.39 -1.72 16 6 C -0.05 -0.58 6.32 -39.50 -0.25 -0.83 16 7 Cl -0.09 -0.94 28.96 -51.86 -1.50 -2.44 16 8 C -0.11 -1.33 9.83 -39.55 -0.39 -1.72 16 9 C -0.11 -1.36 8.70 -39.59 -0.34 -1.70 16 10 C -0.13 -2.31 4.73 -26.62 -0.13 -2.44 16 11 C 0.17 3.92 4.83 -3.72 -0.02 3.90 16 12 N -0.59 -14.36 2.99 -172.33 -0.52 -14.88 16 13 C -0.25 -6.78 9.58 -15.06 -0.14 -6.92 16 14 H 0.06 1.72 7.88 -52.49 -0.41 1.31 16 15 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 16 N -0.90 -25.81 11.20 55.49 0.62 -25.19 16 17 Si 0.90 21.52 29.59 -169.99 -5.03 16.49 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 C 0.14 2.91 6.04 -3.71 -0.02 2.89 16 22 C -0.12 -2.06 3.56 -26.61 -0.09 -2.15 16 23 H 0.05 0.69 7.39 -51.93 -0.38 0.30 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.08 1.32 4.99 -51.93 -0.26 1.06 16 26 H 0.14 1.66 5.89 -52.49 -0.31 1.35 16 27 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 28 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.13 1.56 7.09 -52.49 -0.37 1.19 16 30 H 0.05 0.83 7.34 -51.93 -0.38 0.45 16 31 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.09 2.25 6.06 -51.93 -0.31 1.93 16 33 H 0.02 0.53 6.70 -51.93 -0.35 0.18 16 34 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 36 H 0.02 0.42 6.70 -51.93 -0.35 0.07 16 37 H 0.06 1.05 7.61 -51.93 -0.40 0.65 16 38 H 0.05 0.75 7.41 -51.93 -0.39 0.37 16 LS Contribution 307.98 15.07 4.64 4.64 Total: -1.00 -28.27 307.98 -9.46 -37.73 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -5.15 Total: -0.47 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -2.53 Total: -15.88 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.11 Total: -40.07 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.50 Total: -2.44 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.27 -9.46 -37.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279251179.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.971 kcal (2) G-P(sol) polarization free energy of solvation -28.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds