Wall clock time and date at job start Tue Mar 31 2020 00:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.45842 * 2 1 4 4 C 1.38248 * 119.98266 * 119.72829 * 3 2 1 5 5 C 1.38216 * 120.00933 * 179.72699 * 4 3 2 6 6 C 1.38356 * 119.98561 * 0.54649 * 5 4 3 7 7 Cl 1.73597 * 120.01016 * 179.70451 * 6 5 4 8 8 C 1.38353 * 119.97332 * 359.72580 * 6 5 4 9 9 C 1.38216 * 119.98912 * 0.02562 * 8 6 5 10 10 C 1.53042 * 109.46181 * 240.02802 * 2 1 3 11 11 C 1.53165 * 109.32630 * 301.36258 * 10 2 1 12 12 N 1.46933 * 108.76658 * 305.34932 * 11 10 2 13 13 C 1.36934 * 120.63317 * 233.63567 * 12 11 10 14 14 H 1.08000 * 120.00142 * 151.81376 * 13 12 11 15 15 C 1.38814 * 119.99848 * 331.81235 * 13 12 11 16 16 N 1.31613 * 120.00102 * 343.08096 * 15 13 12 17 17 Si 1.86800 * 119.99879 * 163.08200 * 15 13 12 18 18 H 1.48504 * 109.47098 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47341 * 120.00175 * 17 15 13 20 20 H 1.48505 * 109.46923 * 240.00008 * 17 15 13 21 21 C 1.46929 * 118.73460 * 53.61558 * 12 11 10 22 22 C 1.53042 * 109.45850 * 119.97392 * 2 1 3 23 23 H 1.08999 * 109.47198 * 60.00268 * 1 2 3 24 24 H 1.08994 * 109.47391 * 299.99986 * 1 2 3 25 25 H 1.09004 * 109.47316 * 179.97438 * 1 2 3 26 26 H 1.07999 * 119.99280 * 359.97438 * 4 3 2 27 27 H 1.07998 * 120.00596 * 180.26848 * 5 4 3 28 28 H 1.08002 * 120.00603 * 179.97438 * 8 6 5 29 29 H 1.07994 * 119.99317 * 180.02562 * 9 8 6 30 30 H 1.09003 * 109.49815 * 61.29377 * 10 2 1 31 31 H 1.08996 * 109.49688 * 181.39196 * 10 2 1 32 32 H 1.09000 * 109.58719 * 185.56991 * 11 10 2 33 33 H 1.08994 * 109.71489 * 65.20601 * 11 10 2 34 34 H 0.97000 * 120.00198 * 180.02562 * 16 15 13 35 35 H 1.09003 * 109.58464 * 186.60311 * 21 12 11 36 36 H 1.08996 * 109.70388 * 66.24640 * 21 12 11 37 37 H 1.08997 * 109.49681 * 178.60773 * 22 2 1 38 38 H 1.09000 * 109.49374 * 298.67090 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0320 1.4209 0.0000 4 6 2.8221 1.8746 1.0399 5 6 3.2875 3.1760 1.0376 6 6 2.9532 4.0281 0.0001 7 17 3.5310 5.6651 0.0005 8 6 2.1578 3.5751 -1.0374 9 6 1.6973 2.2720 -1.0367 10 6 2.0399 -0.7209 -1.2500 11 6 1.4995 -2.1540 -1.2646 12 7 1.8626 -2.8089 -0.0004 13 6 2.5269 -4.0063 -0.0005 14 1 3.1751 -4.2643 0.8239 15 6 2.3673 -4.8884 -1.0604 16 7 1.3527 -4.7476 -1.8867 17 14 3.5926 -6.2755 -1.3137 18 1 4.6338 -6.2155 -0.2565 19 1 2.8863 -7.5796 -1.2401 20 1 4.2323 -6.1336 -2.6464 21 6 1.4995 -2.1544 1.2640 22 6 2.0398 -0.7209 1.2500 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 3.0789 1.2107 1.8521 27 1 3.9082 3.5290 1.8478 28 1 1.8962 4.2400 -1.8474 29 1 1.0768 1.9182 -1.8467 30 1 1.6958 -0.1937 -2.1399 31 1 3.1296 -0.7429 -1.2382 32 1 1.9382 -2.7014 -2.0988 33 1 0.4147 -2.1368 -1.3688 34 1 1.2409 -5.3642 -2.6271 35 1 1.9382 -2.7021 2.0981 36 1 0.4149 -2.1350 1.3695 37 1 3.1295 -0.7430 1.2383 38 1 1.6962 -0.1934 2.1398 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279251179.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:08 Heat of formation + Delta-G solvation = 15.159847 kcal Electronic energy + Delta-G solvation = -19800.738073 eV Core-core repulsion = 16861.341704 eV Total energy + Delta-G solvation = -2939.396370 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.19226 -39.07245 -37.37085 -35.68308 -33.15772 -32.33299 -31.34761 -30.46014 -28.54553 -26.55401 -24.53979 -24.15733 -22.75991 -22.08356 -19.68375 -18.47857 -18.07071 -16.88247 -16.31650 -16.27098 -15.60781 -15.49481 -14.95766 -14.85890 -14.80660 -14.50548 -14.31150 -14.09422 -13.21567 -13.18708 -13.00592 -12.68293 -12.61276 -12.49377 -12.43494 -12.28731 -12.14614 -11.90218 -11.76908 -11.68424 -11.43700 -11.13451 -10.94525 -10.50469 -9.93422 -9.43540 -8.61864 -7.85236 -5.29608 0.23280 0.39501 1.19684 1.45629 1.48084 1.57999 2.52334 2.71365 3.28916 3.70400 3.75670 3.79061 4.01807 4.09693 4.13036 4.36053 4.46000 4.49658 4.60737 4.72784 4.79255 4.81533 4.87775 4.97105 5.03253 5.08644 5.09811 5.22394 5.25460 5.30412 5.32864 5.43841 5.52163 5.57106 5.66471 5.76605 5.85449 5.90852 6.42114 7.18325 7.90806 8.41802 9.20694 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.034040 B = 0.003882 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.371939 B = 7210.767565 C = 7283.773700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.009 4.009 3 C -0.062 4.062 4 C -0.115 4.115 5 C -0.111 4.111 6 C -0.053 4.053 7 Cl -0.075 7.075 8 C -0.111 4.111 9 C -0.109 4.109 10 C -0.113 4.113 11 C 0.180 3.820 12 N -0.610 5.610 13 C -0.261 4.261 14 H 0.064 0.936 15 C -0.050 4.050 16 N -0.933 5.933 17 Si 0.962 3.038 18 H -0.268 1.268 19 H -0.292 1.292 20 H -0.291 1.291 21 C 0.140 3.860 22 C -0.114 4.114 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.046 0.954 26 H 0.143 0.857 27 H 0.146 0.854 28 H 0.146 0.854 29 H 0.138 0.862 30 H 0.066 0.934 31 H 0.042 0.958 32 H 0.047 0.953 33 H 0.006 0.994 34 H 0.249 0.751 35 H 0.049 0.951 36 H 0.020 0.980 37 H 0.056 0.944 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.360 18.384 4.283 18.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.009 4.009 3 C -0.062 4.062 4 C -0.133 4.133 5 C -0.129 4.129 6 C -0.079 4.079 7 Cl -0.047 7.047 8 C -0.129 4.129 9 C -0.128 4.128 10 C -0.152 4.152 11 C 0.054 3.946 12 N -0.333 5.333 13 C -0.391 4.391 14 H 0.082 0.918 15 C -0.245 4.245 16 N -0.580 5.580 17 Si 0.791 3.209 18 H -0.192 1.192 19 H -0.219 1.219 20 H -0.218 1.218 21 C 0.015 3.985 22 C -0.152 4.152 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.065 0.935 26 H 0.161 0.839 27 H 0.164 0.836 28 H 0.164 0.836 29 H 0.156 0.844 30 H 0.085 0.915 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.024 0.976 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.038 0.962 37 H 0.074 0.926 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.377 18.430 4.178 18.948 hybrid contribution 0.486 -1.023 -0.473 1.227 sum 1.863 17.407 3.705 17.894 Atomic orbital electron populations 1.21870 0.93438 1.01581 1.02097 1.19323 0.95840 0.90002 0.95767 1.20111 0.96429 0.95067 0.94592 1.21341 0.97391 0.95383 0.99152 1.21229 1.00445 0.93086 0.98176 1.21040 1.01844 0.86588 0.98438 1.98353 1.87905 1.19898 1.98509 1.21195 0.97324 0.96315 0.98098 1.21124 1.00180 0.92706 0.98745 1.22061 0.99508 0.96783 0.96834 1.20575 0.95375 0.89861 0.88785 1.44295 1.66894 1.20940 1.01190 1.19537 1.18826 0.94327 1.06418 0.91849 1.25735 0.98689 0.99975 1.00095 1.70176 1.29511 1.39568 1.18716 0.85283 0.79074 0.79017 0.77546 1.19212 1.21932 1.21799 1.21091 0.96527 0.92654 0.88248 1.22040 1.00176 0.95870 0.97145 0.91984 0.91720 0.93457 0.83894 0.83581 0.83592 0.84446 0.91521 0.93912 0.93499 0.97618 0.94211 0.93241 0.96204 0.92554 0.89847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.84 7.53 71.98 0.54 -3.30 16 2 C -0.01 -0.28 0.60 -52.90 -0.03 -0.31 16 3 C -0.06 -1.59 4.76 -19.86 -0.09 -1.68 16 4 C -0.11 -2.67 8.98 22.27 0.20 -2.47 16 5 C -0.11 -2.34 9.83 22.29 0.22 -2.12 16 6 C -0.05 -1.13 6.32 22.33 0.14 -0.99 16 7 Cl -0.08 -1.46 28.96 -2.72 -0.08 -1.54 16 8 C -0.11 -2.33 9.83 22.29 0.22 -2.11 16 9 C -0.11 -2.55 8.70 22.26 0.19 -2.35 16 10 C -0.11 -4.13 4.73 30.66 0.15 -3.99 16 11 C 0.18 8.49 4.83 86.35 0.42 8.91 16 12 N -0.61 -30.21 2.99 -699.13 -2.09 -32.30 16 13 C -0.26 -14.36 9.58 84.03 0.81 -13.55 16 14 H 0.06 3.43 7.88 -2.91 -0.02 3.40 16 15 C -0.05 -2.77 4.92 84.86 0.42 -2.36 16 16 N -0.93 -55.13 11.20 21.65 0.24 -54.89 16 17 Si 0.96 45.03 29.59 68.60 2.03 47.06 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 19 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 20 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 21 C 0.14 5.62 6.04 86.36 0.52 6.14 16 22 C -0.11 -3.57 3.56 30.67 0.11 -3.46 16 23 H 0.06 1.61 7.39 -2.39 -0.02 1.60 16 24 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.05 1.64 4.99 -2.38 -0.01 1.63 16 26 H 0.14 3.06 5.89 -2.91 -0.02 3.05 16 27 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 28 H 0.15 2.49 8.06 -2.91 -0.02 2.46 16 29 H 0.14 2.94 7.09 -2.91 -0.02 2.92 16 30 H 0.07 2.18 7.34 -2.39 -0.02 2.16 16 31 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.05 2.56 6.06 -2.39 -0.01 2.55 16 33 H 0.01 0.29 6.70 -2.39 -0.02 0.27 16 34 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 35 H 0.05 1.97 7.93 -2.39 -0.02 1.95 16 36 H 0.02 0.81 6.70 -2.39 -0.02 0.79 16 37 H 0.06 1.84 7.61 -2.39 -0.02 1.82 16 38 H 0.08 2.13 7.41 -2.39 -0.02 2.11 16 Total: -1.00 -61.46 307.98 4.96 -56.50 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 1.06 Total: 8.80 kcal Atomic # 6 Polarization: -27.44 SS G_CDS: 3.80 Total: -23.63 kcal Atomic # 7 Polarization: -85.34 SS G_CDS: -1.85 Total: -87.19 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.08 Total: -1.54 kcal Total: -61.46 4.96 -56.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279251179.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.658 kcal (2) G-P(sol) polarization free energy of solvation -61.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds