Wall clock time and date at job start Tue Mar 31 2020 01:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00242 * 2 1 4 4 N 1.46501 * 109.47447 * 125.00048 * 3 2 1 5 5 C 1.46499 * 120.00088 * 270.00450 * 4 3 2 6 6 C 1.50704 * 109.46957 * 269.99725 * 5 4 3 7 7 H 1.08003 * 119.99517 * 359.97438 * 6 5 4 8 8 C 1.37868 * 120.00054 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00094 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00134 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47158 * 59.99966 * 10 8 6 12 12 H 1.48505 * 109.47157 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47125 * 299.99933 * 10 8 6 14 14 C 1.34777 * 119.99869 * 89.99617 * 4 3 2 15 15 O 1.21589 * 119.99967 * 180.02562 * 14 4 3 16 16 N 1.34776 * 120.00050 * 0.02562 * 14 4 3 17 17 C 1.39977 * 119.99970 * 184.64607 * 16 14 4 18 18 C 1.38888 * 120.47844 * 145.03499 * 17 16 14 19 19 N 1.31783 * 120.72246 * 179.97438 * 18 17 16 20 20 C 1.31869 * 121.81853 * 359.97438 * 19 18 17 21 21 C 1.38475 * 120.87786 * 0.02562 * 20 19 18 22 22 F 1.35101 * 120.40448 * 179.97438 * 21 20 19 23 23 C 1.38748 * 119.19037 * 359.97438 * 21 20 19 24 24 H 1.07996 * 119.99678 * 359.97438 * 1 2 3 25 25 H 1.07994 * 120.00223 * 179.97438 * 1 2 3 26 26 H 1.08004 * 119.99985 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47204 * 4.99774 * 3 2 1 28 28 H 1.09004 * 109.47221 * 245.00009 * 3 2 1 29 29 H 1.09000 * 109.47136 * 29.99471 * 5 4 3 30 30 H 1.08996 * 109.46817 * 149.99624 * 5 4 3 31 31 H 0.96995 * 120.00436 * 179.97438 * 9 8 6 32 32 H 0.97003 * 120.00158 * 4.63611 * 16 14 4 33 33 H 1.08007 * 119.63648 * 359.94876 * 18 17 16 34 34 H 1.07997 * 119.56283 * 179.97438 * 20 19 18 35 35 H 1.07995 * 120.82963 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5590 1.8649 2.4249 6 6 2.8444 3.3436 2.4804 7 1 3.3041 3.8368 1.6367 8 6 2.5186 4.0667 3.6081 9 7 1.9583 3.4661 4.6353 10 14 2.8730 5.8994 3.6773 11 1 2.1382 6.5873 2.5854 12 1 2.4321 6.4398 4.9884 13 1 4.3311 6.1282 3.5133 14 6 4.2497 0.8661 0.9823 15 8 5.0217 0.8879 1.9215 16 7 4.6499 0.3760 -0.2077 17 6 5.9206 -0.1966 -0.3372 18 6 6.1229 -1.2780 -1.1849 19 7 7.3172 -1.8205 -1.3109 20 6 8.3612 -1.3656 -0.6459 21 6 8.2398 -0.2906 0.2185 22 9 9.3155 0.1673 0.8954 23 6 6.9998 0.3105 0.3809 24 1 -0.5399 0.9353 0.0004 25 1 -0.5400 -0.9352 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3587 2.1316 0.0895 28 1 2.6213 1.4026 -0.9314 29 1 1.4888 1.6966 2.5459 30 1 3.0991 1.3602 3.2258 31 1 1.7294 3.9747 5.4289 32 1 4.0573 0.4200 -0.9744 33 1 5.2921 -1.6790 -1.7467 34 1 9.3234 -1.8382 -0.7765 35 1 6.8752 1.1507 1.0478 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296911877.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:40 Heat of formation + Delta-G solvation = -3.436523 kcal Electronic energy + Delta-G solvation = -21222.440730 eV Core-core repulsion = 17750.361243 eV Total energy + Delta-G solvation = -3472.079487 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.91943 -40.71956 -39.23329 -36.07554 -34.91544 -33.23707 -32.31539 -31.60999 -29.93633 -27.54079 -25.68111 -24.20090 -23.51204 -22.35922 -20.24718 -19.61613 -18.41216 -17.48965 -17.03858 -16.80298 -16.49176 -15.95388 -15.74211 -15.00334 -14.96885 -14.53777 -14.05003 -13.87548 -13.70321 -13.23773 -13.08932 -12.91629 -12.39229 -12.25762 -11.91300 -11.39995 -11.19519 -10.98414 -10.77450 -10.65732 -10.26004 -10.02497 -9.77091 -9.51510 -9.32313 -9.17080 -8.49304 -8.37949 -7.82031 -6.10454 -4.15964 0.86723 1.12902 2.29390 2.93444 3.27810 3.33079 3.35532 3.44270 3.76892 4.03531 4.25617 4.40800 4.43366 4.74081 4.91205 4.97994 5.09802 5.23755 5.26879 5.36265 5.45983 5.78935 5.88062 6.03395 6.11153 6.30547 6.55634 6.68116 6.79679 6.81901 7.23052 7.36387 7.50014 7.73197 7.85713 8.14234 8.36248 8.82682 9.02080 9.49461 10.97472 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015309 B = 0.005338 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.580429 B = 5244.313631 C = 6725.970680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.175 4.175 3 C 0.136 3.864 4 N -0.598 5.598 5 C 0.261 3.739 6 C -0.531 4.531 7 H 0.057 0.943 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.697 3.303 15 O -0.565 6.565 16 N -0.690 5.690 17 C 0.164 3.836 18 C 0.054 3.946 19 N -0.439 5.439 20 C 0.040 3.960 21 C 0.071 3.929 22 F -0.129 7.129 23 C -0.119 4.119 24 H 0.100 0.900 25 H 0.095 0.905 26 H 0.105 0.895 27 H 0.094 0.906 28 H 0.067 0.933 29 H 0.037 0.963 30 H 0.045 0.955 31 H 0.265 0.735 32 H 0.408 0.592 33 H 0.163 0.837 34 H 0.165 0.835 35 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.325 -8.201 -13.447 16.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.194 4.194 3 C 0.012 3.988 4 N -0.331 5.331 5 C 0.142 3.858 6 C -0.570 4.570 7 H 0.075 0.925 8 C -0.139 4.139 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.202 1.202 14 C 0.399 3.601 15 O -0.440 6.440 16 N -0.340 5.340 17 C 0.064 3.936 18 C -0.107 4.107 19 N -0.146 5.146 20 C -0.120 4.120 21 C 0.049 3.951 22 F -0.108 7.108 23 C -0.148 4.148 24 H 0.118 0.882 25 H 0.114 0.886 26 H 0.123 0.877 27 H 0.112 0.888 28 H 0.085 0.915 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.246 0.754 33 H 0.180 0.820 34 H 0.182 0.818 35 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 3.833 -8.767 -13.008 16.148 hybrid contribution -0.179 1.853 0.506 1.929 sum 3.654 -6.914 -12.502 14.746 Atomic orbital electron populations 1.23845 0.95806 1.01926 0.99741 1.23418 0.96540 0.98827 1.00620 1.20572 0.93227 0.95952 0.89076 1.47625 1.08544 1.62537 1.14429 1.19284 0.95413 0.93650 0.77421 1.21385 1.40955 0.93262 1.01386 0.92489 1.24914 0.94942 0.98789 0.95266 1.69916 1.41699 1.36358 1.05194 0.86557 0.78849 0.84785 0.77212 1.20242 1.21122 1.20184 1.15970 0.83475 0.78688 0.81938 1.90912 1.52704 1.61209 1.39218 1.42965 1.14956 1.63347 1.12746 1.18414 0.85034 0.92988 0.97206 1.22612 0.95647 0.92348 1.00143 1.67636 0.98688 1.27599 1.20707 1.22713 0.99080 0.94982 0.95200 1.18692 0.84132 0.96795 0.95458 1.91524 1.53025 1.88132 1.78090 1.21980 0.89467 1.02007 1.01350 0.88166 0.88635 0.87692 0.88791 0.91472 0.94554 0.93652 0.92560 0.75450 0.82021 0.81793 0.81481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.04 14.32 29.02 0.42 -1.63 16 2 C -0.17 -2.22 9.85 -36.03 -0.35 -2.57 16 3 C 0.14 1.97 5.65 -5.19 -0.03 1.94 16 4 N -0.60 -11.80 2.44 -182.18 -0.44 -12.25 16 5 C 0.26 6.54 5.16 -5.19 -0.03 6.51 16 6 C -0.53 -14.50 9.39 -34.44 -0.32 -14.82 16 7 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 10 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.70 13.78 8.14 -86.92 -0.71 13.07 16 15 O -0.56 -13.62 13.40 5.29 0.07 -13.55 16 16 N -0.69 -9.99 5.23 -14.13 -0.07 -10.07 16 17 C 0.16 2.34 6.32 -83.54 -0.53 1.81 16 18 C 0.05 0.64 11.12 -17.33 -0.19 0.45 16 19 N -0.44 -5.58 10.35 -13.03 -0.13 -5.72 16 20 C 0.04 0.49 11.17 -17.45 -0.19 0.29 16 21 C 0.07 1.01 7.34 -39.31 -0.29 0.72 16 22 F -0.13 -1.87 17.28 2.25 0.04 -1.83 16 23 C -0.12 -1.91 8.80 -39.04 -0.34 -2.25 16 24 H 0.10 1.15 7.84 -52.49 -0.41 0.74 16 25 H 0.10 0.96 8.06 -52.49 -0.42 0.54 16 26 H 0.11 1.27 8.06 -52.48 -0.42 0.84 16 27 H 0.09 1.43 7.72 -51.93 -0.40 1.03 16 28 H 0.07 0.76 6.30 -51.93 -0.33 0.43 16 29 H 0.04 0.92 8.07 -51.93 -0.42 0.51 16 30 H 0.05 1.30 7.42 -51.93 -0.39 0.91 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.41 4.45 6.52 -40.82 -0.27 4.19 16 33 H 0.16 1.42 8.06 -52.48 -0.42 1.00 16 34 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.17 3.14 6.32 -52.49 -0.33 2.81 16 LS Contribution 314.09 15.07 4.73 4.73 Total: -1.00 -32.12 314.09 -6.54 -38.66 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -3.78 Total: 3.65 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -2.67 Total: 5.20 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 0.08 Total: -53.23 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.07 Total: -13.55 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.12 -6.54 -38.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296911877.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.224 kcal (2) G-P(sol) polarization free energy of solvation -32.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds