Wall clock time and date at job start Tue Mar 31 2020 01:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00242 * 2 1 4 4 N 1.46501 * 109.47447 * 125.00048 * 3 2 1 5 5 C 1.46499 * 120.00088 * 270.00450 * 4 3 2 6 6 C 1.50704 * 109.46957 * 269.99725 * 5 4 3 7 7 H 1.08003 * 119.99517 * 359.97438 * 6 5 4 8 8 C 1.37868 * 120.00054 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00094 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00134 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47158 * 59.99966 * 10 8 6 12 12 H 1.48505 * 109.47157 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47125 * 299.99933 * 10 8 6 14 14 C 1.34777 * 119.99869 * 89.99617 * 4 3 2 15 15 O 1.21589 * 119.99967 * 180.02562 * 14 4 3 16 16 N 1.34776 * 120.00050 * 0.02562 * 14 4 3 17 17 C 1.39977 * 119.99970 * 184.64607 * 16 14 4 18 18 C 1.38888 * 120.47844 * 145.03499 * 17 16 14 19 19 N 1.31783 * 120.72246 * 179.97438 * 18 17 16 20 20 C 1.31869 * 121.81853 * 359.97438 * 19 18 17 21 21 C 1.38475 * 120.87786 * 0.02562 * 20 19 18 22 22 F 1.35101 * 120.40448 * 179.97438 * 21 20 19 23 23 C 1.38748 * 119.19037 * 359.97438 * 21 20 19 24 24 H 1.07996 * 119.99678 * 359.97438 * 1 2 3 25 25 H 1.07994 * 120.00223 * 179.97438 * 1 2 3 26 26 H 1.08004 * 119.99985 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47204 * 4.99774 * 3 2 1 28 28 H 1.09004 * 109.47221 * 245.00009 * 3 2 1 29 29 H 1.09000 * 109.47136 * 29.99471 * 5 4 3 30 30 H 1.08996 * 109.46817 * 149.99624 * 5 4 3 31 31 H 0.96995 * 120.00436 * 179.97438 * 9 8 6 32 32 H 0.97003 * 120.00158 * 4.63611 * 16 14 4 33 33 H 1.08007 * 119.63648 * 359.94876 * 18 17 16 34 34 H 1.07997 * 119.56283 * 179.97438 * 20 19 18 35 35 H 1.07995 * 120.82963 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5590 1.8649 2.4249 6 6 2.8444 3.3436 2.4804 7 1 3.3041 3.8368 1.6367 8 6 2.5186 4.0667 3.6081 9 7 1.9583 3.4661 4.6353 10 14 2.8730 5.8994 3.6773 11 1 2.1382 6.5873 2.5854 12 1 2.4321 6.4398 4.9884 13 1 4.3311 6.1282 3.5133 14 6 4.2497 0.8661 0.9823 15 8 5.0217 0.8879 1.9215 16 7 4.6499 0.3760 -0.2077 17 6 5.9206 -0.1966 -0.3372 18 6 6.1229 -1.2780 -1.1849 19 7 7.3172 -1.8205 -1.3109 20 6 8.3612 -1.3656 -0.6459 21 6 8.2398 -0.2906 0.2185 22 9 9.3155 0.1673 0.8954 23 6 6.9998 0.3105 0.3809 24 1 -0.5399 0.9353 0.0004 25 1 -0.5400 -0.9352 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3587 2.1316 0.0895 28 1 2.6213 1.4026 -0.9314 29 1 1.4888 1.6966 2.5459 30 1 3.0991 1.3602 3.2258 31 1 1.7294 3.9747 5.4289 32 1 4.0573 0.4200 -0.9744 33 1 5.2921 -1.6790 -1.7467 34 1 9.3234 -1.8382 -0.7765 35 1 6.8752 1.1507 1.0478 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296911877.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:40 Heat of formation + Delta-G solvation = -24.246737 kcal Electronic energy + Delta-G solvation = -21223.343129 eV Core-core repulsion = 17750.361243 eV Total energy + Delta-G solvation = -3472.981886 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -50.04350 -42.00381 -40.51782 -37.48358 -36.30710 -35.01777 -33.78900 -32.78767 -31.17560 -29.30586 -27.01207 -25.64579 -24.81764 -23.82579 -21.52389 -20.82555 -19.69618 -18.80197 -18.62353 -18.04833 -17.90746 -17.33340 -16.87633 -16.57719 -16.41868 -15.92990 -15.58828 -15.01094 -14.94816 -14.50841 -14.39158 -14.21430 -14.11611 -13.37746 -13.33920 -13.12150 -12.88353 -12.59883 -12.29290 -12.21270 -12.02362 -11.70735 -11.40603 -10.79882 -10.64438 -10.41654 -10.33277 -9.72346 -9.28666 -8.22492 -6.37047 -0.18333 -0.01492 1.22427 1.36852 1.40583 1.47704 1.68447 2.04131 2.37516 2.61085 2.85031 3.04999 3.08524 3.48078 3.69963 3.79480 3.91984 4.03495 4.20732 4.32052 4.42846 4.74327 4.81908 4.89700 4.98156 5.05825 5.13284 5.22131 5.46845 5.64781 5.69189 5.73073 5.88408 5.97758 6.04459 6.70241 6.71487 6.92587 7.29288 7.51156 8.84114 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015309 B = 0.005338 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.580429 B = 5244.313631 C = 6725.970680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.187 4.187 3 C 0.131 3.869 4 N -0.603 5.603 5 C 0.280 3.720 6 C -0.544 4.544 7 H 0.054 0.946 8 C 0.011 3.989 9 N -0.927 5.927 10 Si 0.964 3.036 11 H -0.259 1.259 12 H -0.279 1.279 13 H -0.281 1.281 14 C 0.695 3.305 15 O -0.618 6.618 16 N -0.666 5.666 17 C 0.146 3.854 18 C 0.079 3.921 19 N -0.443 5.443 20 C 0.058 3.942 21 C 0.059 3.941 22 F -0.136 7.136 23 C -0.141 4.141 24 H 0.099 0.901 25 H 0.116 0.884 26 H 0.115 0.885 27 H 0.084 0.916 28 H 0.103 0.897 29 H 0.029 0.971 30 H -0.001 1.001 31 H 0.267 0.733 32 H 0.427 0.573 33 H 0.203 0.797 34 H 0.198 0.802 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.110 -8.993 -16.050 18.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.206 4.206 3 C 0.010 3.990 4 N -0.336 5.336 5 C 0.159 3.841 6 C -0.582 4.582 7 H 0.072 0.928 8 C -0.188 4.188 9 N -0.566 5.566 10 Si 0.789 3.211 11 H -0.184 1.184 12 H -0.205 1.205 13 H -0.207 1.207 14 C 0.397 3.603 15 O -0.498 6.498 16 N -0.318 5.318 17 C 0.047 3.953 18 C -0.082 4.082 19 N -0.150 5.150 20 C -0.100 4.100 21 C 0.037 3.963 22 F -0.114 7.114 23 C -0.171 4.171 24 H 0.118 0.882 25 H 0.134 0.866 26 H 0.133 0.867 27 H 0.103 0.897 28 H 0.121 0.879 29 H 0.047 0.953 30 H 0.017 0.983 31 H 0.076 0.924 32 H 0.269 0.731 33 H 0.220 0.780 34 H 0.215 0.785 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.602 -9.581 -15.701 18.743 hybrid contribution -0.098 2.021 1.272 2.390 sum 3.505 -7.560 -14.429 16.663 Atomic orbital electron populations 1.24066 0.95577 1.02941 0.97676 1.23309 0.96841 0.98074 1.02396 1.20848 0.92817 0.96956 0.88428 1.47424 1.09596 1.62383 1.14153 1.18663 0.94018 0.92408 0.79017 1.21681 1.40655 0.94457 1.01429 0.92788 1.25787 0.94673 1.03465 0.94880 1.70035 1.42680 1.38127 1.05769 0.85526 0.78337 0.79377 0.77906 1.18368 1.20452 1.20653 1.16116 0.82918 0.78522 0.82766 1.90884 1.54133 1.63219 1.41535 1.42498 1.15379 1.62427 1.11496 1.18574 0.84149 0.94244 0.98358 1.23150 0.96481 0.90294 0.98257 1.67812 0.98935 1.27528 1.20764 1.23197 1.00344 0.93357 0.93135 1.18804 0.83348 0.97717 0.96468 1.91502 1.53129 1.88371 1.78434 1.21863 0.91435 1.01926 1.01849 0.88222 0.86595 0.86692 0.89719 0.87896 0.95341 0.98333 0.92405 0.73128 0.78024 0.78496 0.85195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 14.32 67.78 0.97 -2.52 16 2 C -0.19 -4.39 9.85 25.65 0.25 -4.14 16 3 C 0.13 3.67 5.65 85.63 0.48 4.15 16 4 N -0.60 -24.21 2.44 -848.56 -2.07 -26.28 16 5 C 0.28 14.65 5.16 85.63 0.44 15.09 16 6 C -0.54 -30.52 9.39 25.60 0.24 -30.28 16 7 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 8 C 0.01 0.64 5.46 84.65 0.46 1.10 16 9 N -0.93 -55.24 13.29 21.44 0.28 -54.96 16 10 Si 0.96 44.34 29.54 68.60 2.03 46.36 16 11 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 13 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 14 C 0.69 28.07 8.14 179.05 1.46 29.53 16 15 O -0.62 -31.53 13.40 -4.00 -0.05 -31.58 16 16 N -0.67 -18.61 5.23 -316.88 -1.66 -20.26 16 17 C 0.15 4.01 6.32 38.23 0.24 4.25 16 18 C 0.08 1.63 11.12 84.86 0.94 2.58 16 19 N -0.44 -9.77 10.35 -195.14 -2.02 -11.79 16 20 C 0.06 1.28 11.17 84.74 0.95 2.23 16 21 C 0.06 1.64 7.34 22.45 0.16 1.81 16 22 F -0.14 -3.98 17.28 44.97 0.78 -3.20 16 23 C -0.14 -4.66 8.80 22.62 0.20 -4.46 16 24 H 0.10 2.12 7.84 -2.91 -0.02 2.09 16 25 H 0.12 1.99 8.06 -2.91 -0.02 1.97 16 26 H 0.12 2.49 8.06 -2.91 -0.02 2.47 16 27 H 0.08 2.53 7.72 -2.39 -0.02 2.51 16 28 H 0.10 2.07 6.30 -2.39 -0.02 2.06 16 29 H 0.03 1.51 8.07 -2.39 -0.02 1.49 16 30 H 0.00 -0.09 7.42 -2.39 -0.02 -0.11 16 31 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 32 H 0.43 8.21 6.52 -92.71 -0.60 7.60 16 33 H 0.20 2.49 8.06 -2.91 -0.02 2.47 16 34 H 0.20 2.95 8.06 -2.91 -0.02 2.93 16 35 H 0.13 5.29 6.32 -2.91 -0.02 5.28 16 Total: -1.00 -73.52 314.09 4.61 -68.91 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.52 Total: 13.45 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: 6.80 Total: 19.35 kcal Atomic # 7 Polarization: -107.83 SS G_CDS: -5.46 Total: -113.29 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -0.05 Total: -31.58 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.78 Total: -3.20 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -73.52 4.61 -68.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296911877.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.665 kcal (2) G-P(sol) polarization free energy of solvation -73.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds