Wall clock time and date at job start Tue Mar 31 2020 01:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99802 * 2 1 4 4 N 1.46495 * 109.47508 * 124.99538 * 3 2 1 5 5 C 1.46492 * 120.00379 * 270.00569 * 4 3 2 6 6 C 1.50703 * 109.47032 * 269.99560 * 5 4 3 7 7 H 1.07998 * 119.99722 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99882 * 179.97438 * 6 5 4 9 9 N 1.31523 * 119.99553 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00315 * 0.02562 * 8 6 5 11 11 H 1.48505 * 109.46834 * 89.99806 * 10 8 6 12 12 H 1.48497 * 109.47070 * 209.99631 * 10 8 6 13 13 H 1.48501 * 109.46954 * 330.00065 * 10 8 6 14 14 C 1.34777 * 119.99682 * 89.99723 * 4 3 2 15 15 O 1.21581 * 120.00124 * 180.02562 * 14 4 3 16 16 N 1.34781 * 120.00032 * 0.02562 * 14 4 3 17 17 C 1.39671 * 119.99848 * 184.14467 * 16 14 4 18 18 C 1.39331 * 120.86399 * 325.97931 * 17 16 14 19 19 C 1.37975 * 119.09963 * 180.02562 * 18 17 16 20 20 N 1.31958 * 120.88268 * 0.02562 * 19 18 17 21 21 C 1.31971 * 121.90692 * 359.71924 * 20 19 18 22 22 C 1.38153 * 120.80246 * 0.54348 * 21 20 19 23 23 F 1.35098 * 120.48253 * 179.74622 * 22 21 20 24 24 H 1.08000 * 120.00340 * 0.02562 * 1 2 3 25 25 H 1.08004 * 119.99890 * 179.97438 * 1 2 3 26 26 H 1.08000 * 120.00340 * 179.97438 * 2 1 3 27 27 H 1.09010 * 109.47273 * 4.99949 * 3 2 1 28 28 H 1.08998 * 109.47501 * 245.00326 * 3 2 1 29 29 H 1.08996 * 109.47269 * 29.99228 * 5 4 3 30 30 H 1.09005 * 109.47484 * 149.99712 * 5 4 3 31 31 H 0.96995 * 119.99543 * 180.02562 * 9 8 6 32 32 H 0.96993 * 119.99636 * 4.14055 * 16 14 4 33 33 H 1.07997 * 120.44722 * 0.02562 * 18 17 16 34 34 H 1.07995 * 119.55569 * 179.97438 * 19 18 17 35 35 H 1.07998 * 119.60300 * 180.26496 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3321 1.1314 5 6 2.5587 1.8651 2.4248 6 6 2.8440 3.3438 2.4803 7 1 3.3038 3.8371 1.6367 8 6 2.5181 4.0669 3.6082 9 7 2.7676 5.3573 3.6568 10 14 1.7236 3.2136 5.0676 11 1 2.7796 2.7235 5.9895 12 1 0.8467 4.1735 5.7850 13 1 0.9129 2.0653 4.5884 14 6 4.2496 0.8664 0.9824 15 8 5.0215 0.8883 1.9215 16 7 4.6499 0.3764 -0.2076 17 6 5.9218 -0.1854 -0.3394 18 6 7.0019 0.3127 0.3864 19 6 8.2426 -0.2695 0.2277 20 7 8.4140 -1.2844 -0.5981 21 6 7.4165 -1.7888 -1.2998 22 6 6.1442 -1.2594 -1.2023 23 9 5.1289 -1.7775 -1.9274 24 1 -0.5401 0.9353 -0.0004 25 1 -0.5400 -0.9354 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3584 2.1318 0.0896 28 1 2.6212 1.4028 -0.9314 29 1 1.4886 1.6968 2.5458 30 1 3.0988 1.3605 3.2260 31 1 2.5386 5.8659 4.4503 32 1 4.0546 0.4138 -0.9725 33 1 6.8696 1.1433 1.0638 34 1 9.0850 0.1110 0.7863 35 1 7.5980 -2.6227 -1.9616 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297675318.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:47 Heat of formation + Delta-G solvation = 1.337804 kcal Electronic energy + Delta-G solvation = -21470.219206 eV Core-core repulsion = 17998.346749 eV Total energy + Delta-G solvation = -3471.872457 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.02140 -40.69217 -39.34227 -36.22167 -35.11220 -33.25897 -32.32469 -30.99830 -30.58469 -28.18302 -25.82265 -24.15398 -23.40176 -22.16874 -20.30498 -19.67774 -18.52082 -17.51941 -17.37357 -17.04686 -16.71781 -15.87062 -15.64888 -15.06131 -14.81061 -14.44886 -14.18280 -13.85154 -13.70985 -13.54112 -13.29150 -13.13007 -12.43568 -12.26380 -12.01640 -11.73836 -11.38659 -11.04592 -10.86856 -10.60464 -10.23396 -10.05682 -9.66283 -9.41416 -9.39379 -9.03877 -8.65781 -8.59674 -7.91170 -6.15717 -4.15453 0.88995 1.08308 2.21005 2.81681 3.24828 3.30856 3.33130 3.41626 3.72164 3.94271 4.12129 4.33400 4.41620 4.68416 4.80836 4.99406 5.16564 5.18239 5.26918 5.37424 5.56475 5.71363 5.81903 5.96652 6.04579 6.31343 6.36934 6.60966 6.71750 6.75015 6.76560 7.06065 7.25191 7.51732 7.80952 8.18215 8.38144 8.83769 8.89363 9.43750 10.97422 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018683 B = 0.005384 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.332888 B = 5199.289893 C = 6298.501562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.176 4.176 3 C 0.135 3.865 4 N -0.593 5.593 5 C 0.231 3.769 6 C -0.533 4.533 7 H 0.075 0.925 8 C 0.075 3.925 9 N -0.895 5.895 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.266 1.266 14 C 0.703 3.297 15 O -0.562 6.562 16 N -0.687 5.687 17 C 0.194 3.806 18 C -0.149 4.149 19 C 0.106 3.894 20 N -0.480 5.480 21 C 0.090 3.910 22 C 0.005 3.995 23 F -0.133 7.133 24 H 0.101 0.899 25 H 0.096 0.904 26 H 0.105 0.895 27 H 0.097 0.903 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.039 0.961 31 H 0.265 0.735 32 H 0.409 0.591 33 H 0.167 0.833 34 H 0.166 0.834 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.953 -12.487 -10.950 16.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.195 4.195 3 C 0.011 3.989 4 N -0.326 5.326 5 C 0.111 3.889 6 C -0.571 4.571 7 H 0.093 0.907 8 C -0.128 4.128 9 N -0.533 5.533 10 Si 0.701 3.299 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.405 3.595 15 O -0.437 6.437 16 N -0.337 5.337 17 C 0.087 3.913 18 C -0.172 4.172 19 C -0.050 4.050 20 N -0.190 5.190 21 C -0.069 4.069 22 C -0.021 4.021 23 F -0.112 7.112 24 H 0.120 0.880 25 H 0.115 0.885 26 H 0.123 0.877 27 H 0.116 0.884 28 H 0.088 0.912 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.247 0.753 33 H 0.184 0.816 34 H 0.183 0.817 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 3.164 -12.593 -10.154 16.483 hybrid contribution -1.900 0.010 0.347 1.931 sum 1.265 -12.584 -9.806 16.003 Atomic orbital electron populations 1.23866 0.95745 1.02014 0.99680 1.23435 0.96588 0.98848 1.00660 1.20606 0.93240 0.96029 0.88982 1.47239 1.08786 1.62655 1.13896 1.19666 0.94970 0.95098 0.79159 1.21310 1.41541 0.91026 1.03248 0.90683 1.24826 0.95182 0.94705 0.98084 1.69892 1.47503 1.06604 1.29322 0.86876 0.79922 0.79690 0.83370 1.19816 1.20985 1.19027 1.15834 0.83297 0.78515 0.81848 1.90898 1.52555 1.61127 1.39117 1.42812 1.14665 1.63144 1.13058 1.17932 0.86139 0.91286 0.95945 1.22501 0.90809 1.02635 1.01228 1.22769 0.96507 0.91435 0.94285 1.67723 1.32727 1.11681 1.06908 1.22656 0.86241 0.99547 0.98488 1.18644 0.87483 0.96287 0.99647 1.91478 1.58341 1.85626 1.75715 0.88047 0.88550 0.87653 0.88430 0.91204 0.94778 0.94287 0.92460 0.75332 0.81599 0.81682 0.81673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 14.32 29.02 0.42 -1.61 16 2 C -0.18 -2.28 9.85 -36.02 -0.35 -2.64 16 3 C 0.14 2.02 5.65 -5.19 -0.03 1.99 16 4 N -0.59 -11.63 2.44 -182.19 -0.44 -12.08 16 5 C 0.23 5.43 4.23 -5.20 -0.02 5.41 16 6 C -0.53 -14.71 9.94 -34.44 -0.34 -15.06 16 7 H 0.08 2.28 8.06 -52.49 -0.42 1.85 16 8 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 9 N -0.90 -26.90 13.96 55.43 0.77 -26.12 16 10 Si 0.87 20.99 27.47 -169.99 -4.67 16.32 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 14 C 0.70 13.90 8.14 -86.91 -0.71 13.20 16 15 O -0.56 -13.06 13.37 5.29 0.07 -12.99 16 16 N -0.69 -10.69 5.14 -14.01 -0.07 -10.76 16 17 C 0.19 2.90 6.36 -83.39 -0.53 2.37 16 18 C -0.15 -2.24 8.78 -39.27 -0.34 -2.59 16 19 C 0.11 1.36 11.17 -17.59 -0.20 1.16 16 20 N -0.48 -6.22 10.36 -13.28 -0.14 -6.35 16 21 C 0.09 1.05 11.16 -17.52 -0.20 0.86 16 22 C 0.00 0.06 7.35 -39.12 -0.29 -0.23 16 23 F -0.13 -1.64 17.07 2.25 0.04 -1.60 16 24 H 0.10 1.13 7.84 -52.49 -0.41 0.72 16 25 H 0.10 0.96 8.06 -52.48 -0.42 0.54 16 26 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 27 H 0.10 1.50 7.72 -51.92 -0.40 1.10 16 28 H 0.07 0.86 6.30 -51.93 -0.33 0.54 16 29 H 0.03 0.77 7.13 -51.93 -0.37 0.40 16 30 H 0.04 0.98 6.85 -51.93 -0.36 0.63 16 31 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.41 5.29 6.42 -40.82 -0.26 5.03 16 33 H 0.17 2.85 6.26 -52.49 -0.33 2.52 16 34 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 310.10 15.07 4.67 4.67 Total: -1.00 -32.39 310.10 -6.20 -38.59 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -3.74 Total: 5.44 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -2.69 Total: 4.88 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: 0.12 Total: -55.31 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.07 Total: -12.99 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.39 -6.20 -38.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297675318.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.925 kcal (2) G-P(sol) polarization free energy of solvation -32.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds