Wall clock time and date at job start Tue Mar 31 2020 01:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99802 * 2 1 4 4 N 1.46495 * 109.47508 * 124.99538 * 3 2 1 5 5 C 1.46492 * 120.00379 * 270.00569 * 4 3 2 6 6 C 1.50703 * 109.47032 * 269.99560 * 5 4 3 7 7 H 1.07998 * 119.99722 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99882 * 179.97438 * 6 5 4 9 9 N 1.31523 * 119.99553 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00315 * 0.02562 * 8 6 5 11 11 H 1.48505 * 109.46834 * 89.99806 * 10 8 6 12 12 H 1.48497 * 109.47070 * 209.99631 * 10 8 6 13 13 H 1.48501 * 109.46954 * 330.00065 * 10 8 6 14 14 C 1.34777 * 119.99682 * 89.99723 * 4 3 2 15 15 O 1.21581 * 120.00124 * 180.02562 * 14 4 3 16 16 N 1.34781 * 120.00032 * 0.02562 * 14 4 3 17 17 C 1.39671 * 119.99848 * 184.14467 * 16 14 4 18 18 C 1.39331 * 120.86399 * 325.97931 * 17 16 14 19 19 C 1.37975 * 119.09963 * 180.02562 * 18 17 16 20 20 N 1.31958 * 120.88268 * 0.02562 * 19 18 17 21 21 C 1.31971 * 121.90692 * 359.71924 * 20 19 18 22 22 C 1.38153 * 120.80246 * 0.54348 * 21 20 19 23 23 F 1.35098 * 120.48253 * 179.74622 * 22 21 20 24 24 H 1.08000 * 120.00340 * 0.02562 * 1 2 3 25 25 H 1.08004 * 119.99890 * 179.97438 * 1 2 3 26 26 H 1.08000 * 120.00340 * 179.97438 * 2 1 3 27 27 H 1.09010 * 109.47273 * 4.99949 * 3 2 1 28 28 H 1.08998 * 109.47501 * 245.00326 * 3 2 1 29 29 H 1.08996 * 109.47269 * 29.99228 * 5 4 3 30 30 H 1.09005 * 109.47484 * 149.99712 * 5 4 3 31 31 H 0.96995 * 119.99543 * 180.02562 * 9 8 6 32 32 H 0.96993 * 119.99636 * 4.14055 * 16 14 4 33 33 H 1.07997 * 120.44722 * 0.02562 * 18 17 16 34 34 H 1.07995 * 119.55569 * 179.97438 * 19 18 17 35 35 H 1.07998 * 119.60300 * 180.26496 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3321 1.1314 5 6 2.5587 1.8651 2.4248 6 6 2.8440 3.3438 2.4803 7 1 3.3038 3.8371 1.6367 8 6 2.5181 4.0669 3.6082 9 7 2.7676 5.3573 3.6568 10 14 1.7236 3.2136 5.0676 11 1 2.7796 2.7235 5.9895 12 1 0.8467 4.1735 5.7850 13 1 0.9129 2.0653 4.5884 14 6 4.2496 0.8664 0.9824 15 8 5.0215 0.8883 1.9215 16 7 4.6499 0.3764 -0.2076 17 6 5.9218 -0.1854 -0.3394 18 6 7.0019 0.3127 0.3864 19 6 8.2426 -0.2695 0.2277 20 7 8.4140 -1.2844 -0.5981 21 6 7.4165 -1.7888 -1.2998 22 6 6.1442 -1.2594 -1.2023 23 9 5.1289 -1.7775 -1.9274 24 1 -0.5401 0.9353 -0.0004 25 1 -0.5400 -0.9354 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3584 2.1318 0.0896 28 1 2.6212 1.4028 -0.9314 29 1 1.4886 1.6968 2.5458 30 1 3.0988 1.3605 3.2260 31 1 2.5386 5.8659 4.4503 32 1 4.0546 0.4138 -0.9725 33 1 6.8696 1.1433 1.0638 34 1 9.0850 0.1110 0.7863 35 1 7.5980 -2.6227 -1.9616 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297675318.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:46 Heat of formation + Delta-G solvation = -20.030032 kcal Electronic energy + Delta-G solvation = -21471.145785 eV Core-core repulsion = 17998.346749 eV Total energy + Delta-G solvation = -3472.799036 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -50.02820 -42.00544 -40.57131 -37.60882 -36.50152 -35.00126 -33.89685 -32.16389 -31.77340 -29.93474 -27.11649 -25.54603 -24.58013 -23.73569 -21.57459 -20.90284 -19.79241 -19.12240 -18.74808 -18.48542 -17.89702 -17.08633 -16.93066 -16.51524 -16.10160 -15.94568 -15.43306 -15.15908 -15.15291 -14.59772 -14.57983 -14.37815 -14.23757 -13.58387 -13.37150 -13.20528 -12.99358 -12.55068 -12.35445 -12.12000 -11.97668 -11.75434 -11.45382 -10.83177 -10.65737 -10.41257 -10.13210 -9.88236 -9.43522 -8.34042 -6.39443 -0.16246 -0.01498 1.13113 1.34362 1.37546 1.45624 1.57595 1.96961 2.30798 2.62122 2.76424 2.90748 3.01041 3.47143 3.66564 3.73900 3.93731 4.08071 4.23310 4.28526 4.48872 4.61975 4.76464 4.77762 4.84576 4.90224 5.00974 5.19700 5.36494 5.42747 5.63026 5.65476 5.73184 5.83292 6.22980 6.61866 6.74639 6.78725 7.20766 7.37535 8.82685 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018683 B = 0.005384 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.332888 B = 5199.289893 C = 6298.501562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.190 4.190 3 C 0.131 3.869 4 N -0.600 5.600 5 C 0.243 3.757 6 C -0.536 4.536 7 H 0.031 0.969 8 C 0.016 3.984 9 N -0.943 5.943 10 Si 0.944 3.056 11 H -0.276 1.276 12 H -0.276 1.276 13 H -0.238 1.238 14 C 0.700 3.300 15 O -0.605 6.605 16 N -0.673 5.673 17 C 0.172 3.828 18 C -0.168 4.168 19 C 0.115 3.885 20 N -0.485 5.485 21 C 0.102 3.898 22 C 0.011 3.989 23 F -0.127 7.127 24 H 0.105 0.895 25 H 0.118 0.882 26 H 0.109 0.891 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.053 0.947 30 H 0.023 0.977 31 H 0.269 0.731 32 H 0.421 0.579 33 H 0.138 0.862 34 H 0.190 0.810 35 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.123 -15.102 -11.786 19.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.210 4.210 3 C 0.009 3.991 4 N -0.332 5.332 5 C 0.121 3.879 6 C -0.575 4.575 7 H 0.049 0.951 8 C -0.183 4.183 9 N -0.583 5.583 10 Si 0.767 3.233 11 H -0.202 1.202 12 H -0.201 1.201 13 H -0.161 1.161 14 C 0.402 3.598 15 O -0.484 6.484 16 N -0.323 5.323 17 C 0.066 3.934 18 C -0.191 4.191 19 C -0.041 4.041 20 N -0.195 5.195 21 C -0.057 4.057 22 C -0.014 4.014 23 F -0.105 7.105 24 H 0.123 0.877 25 H 0.137 0.863 26 H 0.127 0.873 27 H 0.108 0.892 28 H 0.110 0.890 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.078 0.922 32 H 0.261 0.739 33 H 0.156 0.844 34 H 0.207 0.793 35 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 2.319 -15.239 -11.072 18.979 hybrid contribution -1.577 0.831 0.471 1.844 sum 0.743 -14.408 -10.600 17.903 Atomic orbital electron populations 1.24109 0.95242 1.03267 0.96895 1.23237 0.96974 0.97639 1.03123 1.20835 0.92824 0.97250 0.88180 1.47182 1.09669 1.62407 1.13986 1.19289 0.95586 0.92079 0.80919 1.21523 1.40721 0.93287 1.01937 0.95085 1.25772 0.95861 0.95285 1.01349 1.70043 1.49270 1.08491 1.30526 0.85777 0.79116 0.79405 0.79044 1.20171 1.20094 1.16107 1.15989 0.82956 0.78393 0.82496 1.90866 1.53711 1.62856 1.40923 1.42483 1.15251 1.62571 1.12016 1.18184 0.85614 0.92447 0.97172 1.22357 0.92203 1.02806 1.01732 1.23077 0.96239 0.90873 0.93902 1.67852 1.33054 1.11563 1.07036 1.23258 0.85183 0.99535 0.97727 1.18617 0.88132 0.95558 0.99079 1.91496 1.58219 1.85389 1.75426 0.87709 0.86342 0.87269 0.89175 0.89030 0.92891 0.95926 0.92241 0.73868 0.84447 0.79320 0.77982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 14.32 67.78 0.97 -2.20 16 2 C -0.19 -4.54 9.85 25.65 0.25 -4.29 16 3 C 0.13 3.81 5.65 85.63 0.48 4.30 16 4 N -0.60 -23.74 2.44 -848.58 -2.07 -25.81 16 5 C 0.24 11.49 4.23 85.64 0.36 11.85 16 6 C -0.54 -30.60 9.94 25.60 0.25 -30.34 16 7 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 8 C 0.02 0.91 5.47 84.65 0.46 1.37 16 9 N -0.94 -58.48 13.96 21.45 0.30 -58.19 16 10 Si 0.94 43.34 27.47 68.60 1.88 45.22 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 13 H -0.24 -9.78 6.54 99.48 0.65 -9.13 16 14 C 0.70 28.29 8.14 179.05 1.46 29.75 16 15 O -0.60 -29.31 13.37 -3.97 -0.05 -29.36 16 16 N -0.67 -20.90 5.14 -316.51 -1.63 -22.52 16 17 C 0.17 5.07 6.36 38.47 0.24 5.32 16 18 C -0.17 -5.15 8.78 22.47 0.20 -4.95 16 19 C 0.11 2.83 11.17 84.61 0.95 3.77 16 20 N -0.49 -11.44 10.36 -195.94 -2.03 -13.47 16 21 C 0.10 2.09 11.16 84.65 0.94 3.03 16 22 C 0.01 0.26 7.35 22.57 0.17 0.43 16 23 F -0.13 -2.80 17.07 44.97 0.77 -2.03 16 24 H 0.10 2.05 7.84 -2.91 -0.02 2.03 16 25 H 0.12 1.90 8.06 -2.91 -0.02 1.88 16 26 H 0.11 2.55 8.06 -2.91 -0.02 2.52 16 27 H 0.09 2.74 7.72 -2.38 -0.02 2.72 16 28 H 0.09 2.19 6.30 -2.39 -0.02 2.17 16 29 H 0.05 2.30 7.13 -2.39 -0.02 2.29 16 30 H 0.02 1.15 6.85 -2.38 -0.02 1.13 16 31 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 32 H 0.42 10.55 6.42 -92.71 -0.60 9.95 16 33 H 0.14 5.06 6.26 -2.91 -0.02 5.04 16 34 H 0.19 3.56 8.06 -2.91 -0.02 3.53 16 35 H 0.20 2.60 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -72.72 310.10 4.39 -68.33 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.47 Total: 19.81 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: 6.74 Total: 18.03 kcal Atomic # 7 Polarization: -114.56 SS G_CDS: -5.43 Total: -119.99 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.05 Total: -29.36 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.77 Total: -2.03 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.88 Total: 45.22 kcal Total: -72.72 4.39 -68.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297675318.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.297 kcal (2) G-P(sol) polarization free energy of solvation -72.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds