Wall clock time and date at job start Tue Mar 31 2020 01:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47467 * 2 1 4 4 C 1.52998 * 109.46949 * 239.99718 * 2 1 3 5 5 C 1.50694 * 109.47265 * 65.59861 * 4 2 1 6 6 H 1.08007 * 119.99857 * 5.09770 * 5 4 2 7 7 C 1.37876 * 120.00256 * 185.09992 * 5 4 2 8 8 N 1.31515 * 120.00226 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00019 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47041 * 89.99853 * 9 7 5 11 11 H 1.48498 * 109.47242 * 210.00059 * 9 7 5 12 12 H 1.48500 * 109.46945 * 330.00147 * 9 7 5 13 13 N 1.46902 * 109.47062 * 120.00019 * 2 1 3 14 14 C 1.47159 * 111.00168 * 182.15191 * 13 2 1 15 15 C 1.52894 * 108.52095 * 165.35537 * 14 13 2 16 16 C 1.50713 * 109.96298 * 50.40423 * 15 14 13 17 17 C 1.38660 * 118.48061 * 163.16487 * 16 15 14 18 18 C 1.38148 * 120.34061 * 179.51396 * 17 16 15 19 19 Cl 1.73600 * 120.10218 * 179.97438 * 18 17 16 20 20 C 1.38376 * 119.79880 * 0.02562 * 18 17 16 21 21 C 1.37984 * 119.85598 * 0.09685 * 20 18 17 22 22 C 1.37843 * 121.66040 * 342.88793 * 16 15 14 23 23 C 1.46632 * 110.99937 * 59.15472 * 13 2 1 24 24 H 1.08999 * 109.47467 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47599 * 300.00316 * 1 2 3 26 26 H 1.08998 * 109.47174 * 60.00034 * 1 2 3 27 27 H 1.09001 * 109.47391 * 185.59523 * 4 2 1 28 28 H 1.09003 * 109.47264 * 305.59332 * 4 2 1 29 29 H 0.96995 * 120.00243 * 180.02562 * 8 7 5 30 30 H 1.08995 * 109.62700 * 285.07254 * 14 13 2 31 31 H 1.09008 * 109.62506 * 45.45553 * 14 13 2 32 32 H 1.08999 * 109.40511 * 290.24261 * 15 14 13 33 33 H 1.09000 * 109.37322 * 170.54572 * 15 14 13 34 34 H 1.08006 * 119.83037 * 359.51465 * 17 16 15 35 35 H 1.08008 * 120.07032 * 180.02562 * 20 18 17 36 36 H 1.08000 * 119.80312 * 179.97438 * 21 20 18 37 37 H 1.09004 * 109.30072 * 55.72734 * 23 13 2 38 38 H 1.09001 * 109.30073 * 296.34730 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.6540 0.0645 -2.4758 6 1 1.1733 1.0261 -2.3719 7 6 1.9144 -0.4441 -3.7306 8 7 1.5771 0.2415 -4.8010 9 14 2.7463 -2.1069 -3.9102 10 1 1.7144 -3.1734 -3.9641 11 1 3.5457 -2.1278 -5.1616 12 1 3.6402 -2.3413 -2.7478 13 7 2.0196 -0.6925 1.1994 14 6 3.4898 -0.6677 1.2596 15 6 3.9248 -1.0619 2.6713 16 6 3.2361 -2.3372 3.0847 17 6 3.7477 -3.0459 4.1611 18 6 3.1407 -4.2144 4.5790 19 17 3.7867 -5.0972 5.9270 20 6 2.0169 -4.6797 3.9192 21 6 1.5095 -3.9757 2.8465 22 6 2.1189 -2.8027 2.4250 23 6 1.5330 -2.0750 1.2434 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.1253 -0.8089 -1.2006 28 1 1.5971 -1.7160 -1.3007 29 1 1.7600 -0.1164 -5.6837 30 1 3.8977 -1.3766 0.5392 31 1 3.8487 0.3356 1.0295 32 1 3.6604 -0.2658 3.3673 33 1 5.0044 -1.2117 2.6884 34 1 4.6251 -2.6825 4.6755 35 1 1.5387 -5.5926 4.2425 36 1 0.6325 -4.3398 2.3319 37 1 1.8210 -2.5877 0.3256 38 1 0.4461 -2.0720 1.3250 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298377344.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:20 Heat of formation + Delta-G solvation = 10.369456 kcal Electronic energy + Delta-G solvation = -19538.281057 eV Core-core repulsion = 16598.676961 eV Total energy + Delta-G solvation = -2939.604097 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.23116 -37.91464 -36.51053 -34.02296 -32.69445 -31.83902 -30.08447 -28.97106 -27.50258 -25.08639 -23.20837 -22.70544 -22.34779 -20.29550 -18.46450 -17.22519 -16.75253 -15.82921 -15.58005 -14.76746 -14.64042 -14.35030 -14.04274 -13.63580 -13.51076 -13.14770 -13.08350 -12.80736 -12.30274 -12.24776 -11.98268 -11.78737 -11.36052 -11.27535 -11.11015 -10.97473 -10.87065 -10.64231 -10.41549 -10.19666 -9.91029 -9.86724 -9.24916 -8.91836 -8.60891 -8.49407 -7.74763 -6.10780 -4.08577 1.09333 1.20448 2.01088 3.23404 3.32247 3.34130 3.52402 4.26674 4.38213 4.61356 4.73551 4.83734 5.08618 5.18415 5.22177 5.30809 5.45133 5.56862 5.64223 5.75268 5.83467 5.86437 5.93733 5.99101 6.06974 6.12350 6.21193 6.23876 6.28932 6.48713 6.60074 6.70361 6.76235 6.92096 7.08500 7.13751 7.44434 7.54137 7.80133 8.46592 8.93984 9.51799 11.02394 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.027521 B = 0.004130 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.159435 B = 6777.613533 C = 7050.618587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.089 3.911 3 H 0.080 0.920 4 C -0.040 4.040 5 C -0.514 4.514 6 H 0.075 0.925 7 C 0.068 3.932 8 N -0.901 5.901 9 Si 0.876 3.124 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.269 1.269 13 N -0.530 5.530 14 C 0.049 3.951 15 C -0.076 4.076 16 C -0.054 4.054 17 C -0.113 4.113 18 C -0.040 4.040 19 Cl -0.081 7.081 20 C -0.116 4.116 21 C -0.106 4.106 22 C -0.061 4.061 23 C 0.081 3.919 24 H 0.044 0.956 25 H 0.043 0.957 26 H 0.072 0.928 27 H 0.015 0.985 28 H 0.013 0.987 29 H 0.263 0.737 30 H 0.042 0.958 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.059 0.941 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.856 -7.979 18.478 20.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.018 4.018 3 H 0.098 0.902 4 C -0.079 4.079 5 C -0.552 4.552 6 H 0.093 0.907 7 C -0.133 4.133 8 N -0.540 5.540 9 Si 0.704 3.296 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.194 1.194 13 N -0.254 5.254 14 C -0.079 4.079 15 C -0.113 4.113 16 C -0.055 4.055 17 C -0.131 4.131 18 C -0.066 4.066 19 Cl -0.053 7.053 20 C -0.134 4.134 21 C -0.125 4.125 22 C -0.062 4.062 23 C -0.047 4.047 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.091 0.909 27 H 0.033 0.967 28 H 0.031 0.969 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.077 0.923 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.726 -7.789 18.816 20.546 hybrid contribution 0.814 -1.542 -0.870 1.948 sum 3.540 -9.331 17.946 20.534 Atomic orbital electron populations 1.21755 0.94762 1.01108 1.01353 1.21730 0.95450 0.97799 0.86820 0.90193 1.20190 0.96167 0.96415 0.95089 1.21007 1.39571 1.05894 0.88749 0.90679 1.25010 0.95176 0.97116 0.95988 1.69901 1.47810 1.38333 0.97956 0.86840 0.80132 0.85024 0.77621 1.20319 1.21322 1.19389 1.62715 1.08392 1.13505 1.40772 1.22105 0.88974 1.01858 0.94958 1.20597 0.98820 0.94034 0.97834 1.19592 0.95001 0.96465 0.94438 1.20973 1.00675 0.93989 0.97505 1.20780 0.97553 0.95456 0.92833 1.98352 1.86159 1.75630 1.45112 1.20897 0.95506 1.00693 0.96340 1.21033 1.00294 0.94691 0.96468 1.19912 0.94591 0.94799 0.96856 1.21083 1.00205 0.89192 0.94188 0.93667 0.93770 0.90878 0.96719 0.96876 0.92702 0.93926 0.89960 0.89675 0.90524 0.85224 0.85193 0.85072 0.92285 0.89039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.74 37.16 0.32 -2.02 16 2 C 0.09 1.68 2.37 -67.72 -0.16 1.52 16 3 H 0.08 1.56 8.06 -51.93 -0.42 1.14 16 4 C -0.04 -0.90 2.79 -27.89 -0.08 -0.98 16 5 C -0.51 -13.93 8.87 -34.44 -0.31 -14.24 16 6 H 0.08 2.18 7.54 -52.48 -0.40 1.79 16 7 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 8 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 9 Si 0.88 21.41 27.37 -169.99 -4.65 16.76 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.37 6.69 56.52 0.38 -6.00 16 13 N -0.53 -8.65 4.70 -228.20 -1.07 -9.72 16 14 C 0.05 0.74 4.77 -3.74 -0.02 0.72 16 15 C -0.08 -0.93 5.94 -27.93 -0.17 -1.09 16 16 C -0.05 -0.71 5.77 -104.60 -0.60 -1.32 16 17 C -0.11 -1.33 9.44 -39.46 -0.37 -1.71 16 18 C -0.04 -0.46 6.32 -39.56 -0.25 -0.71 16 19 Cl -0.08 -0.86 28.96 -51.86 -1.50 -2.36 16 20 C -0.12 -1.30 9.83 -39.62 -0.39 -1.69 16 21 C -0.11 -1.27 9.65 -39.49 -0.38 -1.65 16 22 C -0.06 -0.84 5.79 -104.62 -0.61 -1.45 16 23 C 0.08 1.24 4.47 -5.16 -0.02 1.22 16 24 H 0.04 0.76 6.47 -51.93 -0.34 0.43 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.07 1.43 7.10 -51.93 -0.37 1.06 16 27 H 0.01 0.34 5.93 -51.93 -0.31 0.03 16 28 H 0.01 0.30 5.78 -51.93 -0.30 0.00 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.04 0.71 6.99 -51.93 -0.36 0.34 16 31 H 0.08 1.20 7.97 -51.92 -0.41 0.79 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 35 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 36 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.06 1.01 6.21 -51.93 -0.32 0.69 16 38 H 0.09 1.33 6.47 -51.93 -0.34 0.99 16 LS Contribution 311.54 15.07 4.69 4.69 Total: -1.00 -29.14 311.54 -10.14 -39.28 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -5.26 Total: -0.71 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: -3.13 Total: -21.56 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: -0.30 Total: -36.11 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.65 Total: 16.76 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.36 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.14 -10.14 -39.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298377344.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.654 kcal (2) G-P(sol) polarization free energy of solvation -29.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds