Wall clock time and date at job start Tue Mar 31 2020 01:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47467 * 2 1 4 4 C 1.52998 * 109.46949 * 239.99718 * 2 1 3 5 5 C 1.50694 * 109.47265 * 65.59861 * 4 2 1 6 6 H 1.08007 * 119.99857 * 5.09770 * 5 4 2 7 7 C 1.37876 * 120.00256 * 185.09992 * 5 4 2 8 8 N 1.31515 * 120.00226 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00019 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47041 * 89.99853 * 9 7 5 11 11 H 1.48498 * 109.47242 * 210.00059 * 9 7 5 12 12 H 1.48500 * 109.46945 * 330.00147 * 9 7 5 13 13 N 1.46902 * 109.47062 * 120.00019 * 2 1 3 14 14 C 1.47159 * 111.00168 * 182.15191 * 13 2 1 15 15 C 1.52894 * 108.52095 * 165.35537 * 14 13 2 16 16 C 1.50713 * 109.96298 * 50.40423 * 15 14 13 17 17 C 1.38660 * 118.48061 * 163.16487 * 16 15 14 18 18 C 1.38148 * 120.34061 * 179.51396 * 17 16 15 19 19 Cl 1.73600 * 120.10218 * 179.97438 * 18 17 16 20 20 C 1.38376 * 119.79880 * 0.02562 * 18 17 16 21 21 C 1.37984 * 119.85598 * 0.09685 * 20 18 17 22 22 C 1.37843 * 121.66040 * 342.88793 * 16 15 14 23 23 C 1.46632 * 110.99937 * 59.15472 * 13 2 1 24 24 H 1.08999 * 109.47467 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47599 * 300.00316 * 1 2 3 26 26 H 1.08998 * 109.47174 * 60.00034 * 1 2 3 27 27 H 1.09001 * 109.47391 * 185.59523 * 4 2 1 28 28 H 1.09003 * 109.47264 * 305.59332 * 4 2 1 29 29 H 0.96995 * 120.00243 * 180.02562 * 8 7 5 30 30 H 1.08995 * 109.62700 * 285.07254 * 14 13 2 31 31 H 1.09008 * 109.62506 * 45.45553 * 14 13 2 32 32 H 1.08999 * 109.40511 * 290.24261 * 15 14 13 33 33 H 1.09000 * 109.37322 * 170.54572 * 15 14 13 34 34 H 1.08006 * 119.83037 * 359.51465 * 17 16 15 35 35 H 1.08008 * 120.07032 * 180.02562 * 20 18 17 36 36 H 1.08000 * 119.80312 * 179.97438 * 21 20 18 37 37 H 1.09004 * 109.30072 * 55.72734 * 23 13 2 38 38 H 1.09001 * 109.30073 * 296.34730 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.6540 0.0645 -2.4758 6 1 1.1733 1.0261 -2.3719 7 6 1.9144 -0.4441 -3.7306 8 7 1.5771 0.2415 -4.8010 9 14 2.7463 -2.1069 -3.9102 10 1 1.7144 -3.1734 -3.9641 11 1 3.5457 -2.1278 -5.1616 12 1 3.6402 -2.3413 -2.7478 13 7 2.0196 -0.6925 1.1994 14 6 3.4898 -0.6677 1.2596 15 6 3.9248 -1.0619 2.6713 16 6 3.2361 -2.3372 3.0847 17 6 3.7477 -3.0459 4.1611 18 6 3.1407 -4.2144 4.5790 19 17 3.7867 -5.0972 5.9270 20 6 2.0169 -4.6797 3.9192 21 6 1.5095 -3.9757 2.8465 22 6 2.1189 -2.8027 2.4250 23 6 1.5330 -2.0750 1.2434 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.1253 -0.8089 -1.2006 28 1 1.5971 -1.7160 -1.3007 29 1 1.7600 -0.1164 -5.6837 30 1 3.8977 -1.3766 0.5392 31 1 3.8487 0.3356 1.0295 32 1 3.6604 -0.2658 3.3673 33 1 5.0044 -1.2117 2.6884 34 1 4.6251 -2.6825 4.6755 35 1 1.5387 -5.5926 4.2425 36 1 0.6325 -4.3398 2.3319 37 1 1.8210 -2.5877 0.3256 38 1 0.4461 -2.0720 1.3250 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298377344.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:19 Heat of formation + Delta-G solvation = -5.732772 kcal Electronic energy + Delta-G solvation = -19538.979302 eV Core-core repulsion = 16598.676961 eV Total energy + Delta-G solvation = -2940.302342 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.28104 -39.11576 -37.42270 -35.47770 -34.31847 -33.12835 -31.28637 -30.26463 -29.10395 -26.30491 -24.58179 -24.26316 -23.28131 -21.55842 -19.80117 -19.13634 -17.82169 -16.94475 -16.83221 -16.25366 -15.89542 -15.59041 -15.36143 -15.11513 -14.79462 -14.42185 -14.21725 -14.07168 -13.92868 -13.40008 -13.21008 -12.93707 -12.88620 -12.67656 -12.60153 -12.23346 -12.00528 -11.89847 -11.79489 -11.72995 -11.52831 -11.43083 -11.26084 -10.76661 -9.82040 -9.49160 -9.10700 -8.29991 -6.31921 0.15913 0.31550 1.14914 1.29381 1.31820 1.41737 2.31772 2.60082 2.98588 3.05070 3.67482 3.74931 3.92679 4.06862 4.17191 4.26055 4.36679 4.41471 4.44082 4.55631 4.63509 4.67652 4.71327 4.86340 4.90312 4.96690 5.00441 5.11732 5.18429 5.24952 5.26883 5.31472 5.42164 5.45017 5.53903 5.64660 5.84115 6.10776 6.19176 6.35822 6.76195 7.31604 8.86400 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.027521 B = 0.004130 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.159435 B = 6777.613533 C = 7050.618587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.096 3.904 3 H 0.069 0.931 4 C -0.031 4.031 5 C -0.514 4.514 6 H 0.041 0.959 7 C 0.009 3.991 8 N -0.948 5.948 9 Si 0.940 3.060 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.257 1.257 13 N -0.524 5.524 14 C 0.045 3.955 15 C -0.068 4.068 16 C -0.066 4.066 17 C -0.114 4.114 18 C -0.045 4.045 19 Cl -0.071 7.071 20 C -0.116 4.116 21 C -0.107 4.107 22 C -0.082 4.082 23 C 0.083 3.917 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.046 0.954 27 H 0.011 0.989 28 H 0.015 0.985 29 H 0.265 0.735 30 H 0.025 0.975 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.147 0.853 37 H 0.039 0.961 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.568 -9.881 20.736 23.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.012 4.012 3 H 0.088 0.912 4 C -0.070 4.070 5 C -0.553 4.553 6 H 0.059 0.941 7 C -0.188 4.188 8 N -0.590 5.590 9 Si 0.765 3.235 10 H -0.192 1.192 11 H -0.211 1.211 12 H -0.181 1.181 13 N -0.247 5.247 14 C -0.083 4.083 15 C -0.105 4.105 16 C -0.067 4.067 17 C -0.133 4.133 18 C -0.071 4.071 19 Cl -0.042 7.042 20 C -0.134 4.134 21 C -0.126 4.126 22 C -0.083 4.083 23 C -0.044 4.044 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.065 0.935 27 H 0.030 0.970 28 H 0.033 0.967 29 H 0.074 0.926 30 H 0.043 0.957 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.165 0.835 35 H 0.168 0.832 36 H 0.165 0.835 37 H 0.057 0.943 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.442 -9.696 21.104 23.479 hybrid contribution 0.579 -0.917 -1.501 1.852 sum 4.020 -10.613 19.603 22.651 Atomic orbital electron populations 1.21662 0.93953 1.01601 1.01095 1.21528 0.96128 0.97121 0.86419 0.91239 1.20092 0.95878 0.96124 0.94871 1.21313 1.38326 1.05004 0.90651 0.94061 1.25878 0.96126 1.01090 0.95698 1.70045 1.49809 1.40503 0.98593 0.85807 0.79410 0.80388 0.77910 1.19250 1.21062 1.18068 1.62727 1.09340 1.14247 1.38389 1.22196 0.87979 1.01481 0.96620 1.20564 1.00008 0.94109 0.95793 1.19716 0.95030 0.96914 0.94994 1.21121 1.01124 0.93890 0.97122 1.20958 0.97623 0.95501 0.93041 1.98359 1.86016 1.75333 1.44522 1.21148 0.95296 1.01198 0.95781 1.21220 1.00654 0.94059 0.96631 1.19878 0.95608 0.95795 0.96976 1.21056 1.00714 0.88287 0.94370 0.92782 0.91561 0.93525 0.97048 0.96657 0.92604 0.95686 0.89964 0.88736 0.88410 0.83527 0.83165 0.83507 0.94277 0.88459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.43 8.74 71.98 0.63 -3.80 16 2 C 0.10 3.62 2.37 44.91 0.11 3.72 16 3 H 0.07 2.75 8.06 -2.39 -0.02 2.73 16 4 C -0.03 -1.40 2.79 29.85 0.08 -1.31 16 5 C -0.51 -28.64 8.87 25.60 0.23 -28.41 16 6 H 0.04 2.51 7.54 -2.91 -0.02 2.49 16 7 C 0.01 0.52 5.47 84.65 0.46 0.98 16 8 N -0.95 -58.75 13.96 21.45 0.30 -58.45 16 9 Si 0.94 44.25 27.37 68.60 1.88 46.13 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 11 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.26 -11.45 6.69 99.48 0.67 -10.78 16 13 N -0.52 -16.55 4.70 -875.90 -4.11 -20.66 16 14 C 0.05 1.31 4.77 86.22 0.41 1.72 16 15 C -0.07 -1.50 5.94 29.82 0.18 -1.33 16 16 C -0.07 -1.57 5.77 -19.85 -0.11 -1.69 16 17 C -0.11 -2.37 9.44 22.35 0.21 -2.16 16 18 C -0.04 -0.92 6.32 22.28 0.14 -0.77 16 19 Cl -0.07 -1.30 28.96 -2.72 -0.08 -1.38 16 20 C -0.12 -2.26 9.83 22.24 0.22 -2.05 16 21 C -0.11 -2.31 9.65 22.33 0.22 -2.09 16 22 C -0.08 -2.10 5.79 -19.86 -0.12 -2.22 16 23 C 0.08 2.45 4.47 85.59 0.38 2.83 16 24 H 0.05 1.78 6.47 -2.39 -0.02 1.76 16 25 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 26 H 0.05 1.87 7.10 -2.39 -0.02 1.85 16 27 H 0.01 0.52 5.93 -2.39 -0.01 0.51 16 28 H 0.02 0.69 5.78 -2.39 -0.01 0.67 16 29 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 30 H 0.02 0.81 6.99 -2.39 -0.02 0.79 16 31 H 0.08 2.34 7.97 -2.38 -0.02 2.32 16 32 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 35 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 36 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 37 H 0.04 1.30 6.21 -2.38 -0.01 1.29 16 38 H 0.10 2.68 6.47 -2.39 -0.02 2.66 16 Total: -1.00 -63.03 311.54 2.04 -61.00 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 1.01 Total: 9.94 kcal Atomic # 6 Polarization: -39.61 SS G_CDS: 3.04 Total: -36.57 kcal Atomic # 7 Polarization: -75.30 SS G_CDS: -3.81 Total: -79.11 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.88 Total: 46.13 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.08 Total: -1.38 kcal Total: -63.03 2.04 -61.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298377344.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.263 kcal (2) G-P(sol) polarization free energy of solvation -63.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds