Wall clock time and date at job start Tue Mar 31 2020 01:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09009 * 115.55393 * 2 1 4 4 C 1.52997 * 117.49824 * 214.29784 * 2 1 3 5 5 C 1.52992 * 60.00299 * 252.50640 * 4 2 1 6 6 H 1.09002 * 117.51802 * 252.52338 * 5 4 2 7 7 C 1.52997 * 117.50032 * 107.48382 * 5 4 2 8 8 H 1.09000 * 109.47734 * 237.99450 * 7 5 4 9 9 N 1.46908 * 109.46852 * 117.99755 * 7 5 4 10 10 C 1.46900 * 110.99926 * 86.23328 * 9 7 5 11 11 C 1.50704 * 109.47142 * 174.79811 * 10 9 7 12 12 H 1.07995 * 119.99867 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99826 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00510 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99813 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47381 * 89.99466 * 15 13 11 17 17 H 1.48500 * 109.46870 * 209.99767 * 15 13 11 18 18 H 1.48505 * 109.46764 * 329.99182 * 15 13 11 19 19 C 1.50696 * 109.47214 * 358.00228 * 7 5 4 20 20 C 1.38248 * 119.98742 * 250.72575 * 19 7 5 21 21 C 1.38210 * 120.01342 * 179.97438 * 20 19 7 22 22 C 1.38349 * 119.98760 * 0.02562 * 21 20 19 23 23 Cl 1.73600 * 120.01057 * 179.97438 * 22 21 20 24 24 C 1.38350 * 119.97687 * 0.27752 * 22 21 20 25 25 C 1.38222 * 119.98079 * 359.44384 * 24 22 21 26 26 H 1.09005 * 109.47132 * 265.74624 * 1 2 3 27 27 H 1.08998 * 109.47618 * 25.74073 * 1 2 3 28 28 H 1.08999 * 109.47559 * 145.74612 * 1 2 3 29 29 H 1.09006 * 117.50372 * 145.01344 * 4 2 1 30 30 H 1.09008 * 117.49775 * 359.97438 * 4 2 1 31 31 H 1.00899 * 110.99585 * 322.27696 * 9 7 5 32 32 H 1.09004 * 109.46828 * 294.79587 * 10 9 7 33 33 H 1.08994 * 109.47236 * 54.79196 * 10 9 7 34 34 H 0.96994 * 120.00691 * 180.02562 * 14 13 11 35 35 H 1.08001 * 119.98674 * 0.02562 * 20 19 7 36 36 H 1.08005 * 120.00221 * 179.97438 * 21 20 19 37 37 H 1.08000 * 120.00742 * 179.71772 * 24 22 21 38 38 H 1.08001 * 119.98529 * 180.27799 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2363 -1.1211 -0.7647 5 6 2.2365 -1.1208 0.7652 6 1 3.1714 -0.8747 1.2687 7 6 1.3589 -2.1557 1.4720 8 1 0.6484 -1.6461 2.1228 9 7 2.2050 -3.0488 2.2749 10 6 2.4523 -2.4822 3.6075 11 6 3.2133 -3.4787 4.4437 12 1 3.4855 -4.4371 4.0270 13 6 3.5609 -3.1672 5.7410 14 7 3.2290 -2.0002 6.2486 15 14 4.5048 -4.4020 6.7772 16 1 5.9630 -4.1870 6.5977 17 1 4.1501 -4.2213 8.2078 18 1 4.1512 -5.7796 6.3498 19 6 0.6088 -2.9639 0.4447 20 6 -0.7558 -2.7986 0.2975 21 6 -1.4442 -3.5391 -0.6449 22 6 -0.7674 -4.4463 -1.4406 23 17 -1.6316 -5.3772 -2.6240 24 6 0.5972 -4.6158 -1.2885 25 6 1.2854 -3.8705 -0.3497 26 1 -0.3634 -0.0762 1.0249 27 1 -0.3634 0.9256 -0.4463 28 1 -0.3634 -0.8494 -0.5784 29 1 3.1714 -0.8755 -1.2682 30 1 1.6110 -1.8590 -1.2675 31 1 3.0726 -3.2484 1.8001 32 1 3.0372 -1.5675 3.5106 33 1 1.5008 -2.2558 4.0884 34 1 3.4739 -1.7809 7.1611 35 1 -1.2839 -2.0901 0.9184 36 1 -2.5104 -3.4102 -0.7595 37 1 1.1252 -5.3271 -1.9063 38 1 2.3515 -3.9996 -0.2341 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298817071.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:40 Heat of formation + Delta-G solvation = 38.088457 kcal Electronic energy + Delta-G solvation = -19426.381709 eV Core-core repulsion = 16487.979598 eV Total energy + Delta-G solvation = -2938.402111 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -40.16634 -37.71819 -36.27343 -34.79195 -32.52335 -31.14309 -30.60365 -28.45858 -27.00837 -24.64417 -22.79484 -22.13280 -21.51316 -20.67698 -19.17964 -17.15108 -16.46010 -15.71971 -15.52541 -15.00849 -14.64437 -14.40610 -13.85423 -13.54087 -13.37129 -13.28498 -12.64336 -12.52008 -12.43225 -12.19263 -11.74627 -11.53531 -11.48403 -11.17873 -11.07772 -10.90836 -10.74762 -10.64706 -10.63021 -10.03131 -9.68363 -9.65429 -9.24297 -8.85984 -8.51008 -8.34813 -7.38446 -6.05192 -4.07148 1.27466 1.40850 2.16546 3.30602 3.37033 3.41640 3.74261 3.89907 4.41709 4.81213 4.85012 4.95530 4.97825 4.98955 5.15881 5.31023 5.36532 5.45187 5.47212 5.54699 5.76511 5.81210 5.88748 5.91511 5.97044 6.06491 6.11777 6.13007 6.29249 6.33382 6.42791 6.49605 6.78411 6.92539 7.18098 7.35212 7.75759 8.08629 8.33130 8.53336 9.01675 9.57919 11.05608 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018589 B = 0.004420 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.917076 B = 6332.745126 C = 7275.599635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.151 4.151 3 H 0.097 0.903 4 C -0.181 4.181 5 C -0.170 4.170 6 H 0.108 0.892 7 C 0.151 3.849 8 H 0.085 0.915 9 N -0.676 5.676 10 C 0.195 3.805 11 C -0.512 4.512 12 H 0.062 0.938 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.898 3.102 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.273 1.273 19 C -0.039 4.039 20 C -0.104 4.104 21 C -0.115 4.115 22 C -0.043 4.043 23 Cl -0.086 7.086 24 C -0.116 4.116 25 C -0.082 4.082 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.331 0.669 32 H -0.011 1.011 33 H 0.028 0.972 34 H 0.261 0.739 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.088 0.548 -16.619 18.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.170 4.170 3 H 0.115 0.885 4 C -0.218 4.218 5 C -0.190 4.190 6 H 0.126 0.874 7 C 0.040 3.960 8 H 0.103 0.897 9 N -0.304 5.304 10 C 0.069 3.931 11 C -0.551 4.551 12 H 0.081 0.919 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.726 3.274 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.040 4.040 20 C -0.123 4.123 21 C -0.134 4.134 22 C -0.069 4.069 23 Cl -0.057 7.057 24 C -0.135 4.135 25 C -0.101 4.101 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.119 0.881 31 H 0.148 0.852 32 H 0.007 0.993 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.676 0.164 -16.303 18.021 hybrid contribution 1.157 0.100 0.409 1.231 sum -6.519 0.264 -15.895 17.182 Atomic orbital electron populations 1.21618 0.93229 1.01875 1.01933 1.22257 0.95331 0.94135 1.05272 0.88472 1.23319 1.02357 1.01823 0.94292 1.23373 1.01761 1.00023 0.93846 0.87411 1.20062 0.94797 0.89391 0.91795 0.89691 1.60777 1.20649 1.44262 1.04740 1.19600 0.96316 0.93785 0.83382 1.21162 1.34956 1.01824 0.97174 0.91938 1.24972 0.96214 0.95464 0.97845 1.69954 1.46954 1.21300 1.15551 0.86500 0.79927 0.81633 0.79373 1.20744 1.21257 1.19759 1.20019 0.93332 0.95593 0.95063 1.21040 0.93865 0.99366 0.98002 1.20925 1.00046 0.96280 0.96152 1.20829 0.92756 0.97917 0.95427 1.98345 1.77204 1.72875 1.57311 1.21000 0.92149 1.00545 0.99763 1.20929 1.00532 0.94594 0.94034 0.92109 0.92806 0.91530 0.89517 0.88061 0.85178 0.99316 0.95434 0.92914 0.85241 0.85422 0.85398 0.85109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 8.12 37.15 0.30 -1.20 16 2 C -0.15 -1.93 6.41 -90.62 -0.58 -2.51 16 3 H 0.10 1.18 8.14 -51.92 -0.42 0.76 16 4 C -0.18 -2.27 8.93 -26.74 -0.24 -2.51 16 5 C -0.17 -2.52 5.60 -90.62 -0.51 -3.03 16 6 H 0.11 1.78 7.95 -51.93 -0.41 1.36 16 7 C 0.15 2.47 1.99 -68.86 -0.14 2.34 16 8 H 0.09 1.50 6.74 -51.93 -0.35 1.15 16 9 N -0.68 -13.58 5.86 -109.22 -0.64 -14.22 16 10 C 0.20 4.91 5.28 -4.97 -0.03 4.88 16 11 C -0.51 -14.20 9.36 -34.44 -0.32 -14.52 16 12 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -26.42 13.29 55.43 0.74 -25.69 16 15 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 C -0.04 -0.56 3.11 -104.62 -0.33 -0.89 16 20 C -0.10 -1.34 6.76 -39.59 -0.27 -1.61 16 21 C -0.12 -1.39 9.83 -39.55 -0.39 -1.77 16 22 C -0.04 -0.53 6.32 -39.50 -0.25 -0.78 16 23 Cl -0.09 -0.97 28.96 -51.86 -1.50 -2.47 16 24 C -0.12 -1.44 9.83 -39.55 -0.39 -1.83 16 25 C -0.08 -1.11 7.14 -39.59 -0.28 -1.40 16 26 H 0.06 0.72 6.97 -51.93 -0.36 0.36 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.76 5.01 -51.93 -0.26 0.50 16 29 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.10 1.28 5.16 -51.92 -0.27 1.01 16 31 H 0.33 6.34 8.11 -39.29 -0.32 6.02 16 32 H -0.01 -0.29 7.95 -51.93 -0.41 -0.70 16 33 H 0.03 0.75 7.92 -51.93 -0.41 0.34 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.13 1.52 7.11 -52.49 -0.37 1.14 16 36 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 37 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.13 1.73 7.64 -52.49 -0.40 1.32 16 LS Contribution 320.31 15.07 4.83 4.83 Total: -1.00 -28.73 320.31 -10.34 -39.07 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -5.23 Total: 5.35 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: -3.51 Total: -23.33 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.10 Total: -39.91 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.50 Total: -2.47 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.73 -10.34 -39.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298817071.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.157 kcal (2) G-P(sol) polarization free energy of solvation -28.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds