Wall clock time and date at job start Tue Mar 31 2020 01:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09009 * 115.55393 * 2 1 4 4 C 1.52997 * 117.49824 * 214.29784 * 2 1 3 5 5 C 1.52992 * 60.00299 * 252.50640 * 4 2 1 6 6 H 1.09002 * 117.51802 * 252.52338 * 5 4 2 7 7 C 1.52997 * 117.50032 * 107.48382 * 5 4 2 8 8 H 1.09000 * 109.47734 * 237.99450 * 7 5 4 9 9 N 1.46908 * 109.46852 * 117.99755 * 7 5 4 10 10 C 1.46900 * 110.99926 * 86.23328 * 9 7 5 11 11 C 1.50704 * 109.47142 * 174.79811 * 10 9 7 12 12 H 1.07995 * 119.99867 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99826 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00510 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99813 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47381 * 89.99466 * 15 13 11 17 17 H 1.48500 * 109.46870 * 209.99767 * 15 13 11 18 18 H 1.48505 * 109.46764 * 329.99182 * 15 13 11 19 19 C 1.50696 * 109.47214 * 358.00228 * 7 5 4 20 20 C 1.38248 * 119.98742 * 250.72575 * 19 7 5 21 21 C 1.38210 * 120.01342 * 179.97438 * 20 19 7 22 22 C 1.38349 * 119.98760 * 0.02562 * 21 20 19 23 23 Cl 1.73600 * 120.01057 * 179.97438 * 22 21 20 24 24 C 1.38350 * 119.97687 * 0.27752 * 22 21 20 25 25 C 1.38222 * 119.98079 * 359.44384 * 24 22 21 26 26 H 1.09005 * 109.47132 * 265.74624 * 1 2 3 27 27 H 1.08998 * 109.47618 * 25.74073 * 1 2 3 28 28 H 1.08999 * 109.47559 * 145.74612 * 1 2 3 29 29 H 1.09006 * 117.50372 * 145.01344 * 4 2 1 30 30 H 1.09008 * 117.49775 * 359.97438 * 4 2 1 31 31 H 1.00899 * 110.99585 * 322.27696 * 9 7 5 32 32 H 1.09004 * 109.46828 * 294.79587 * 10 9 7 33 33 H 1.08994 * 109.47236 * 54.79196 * 10 9 7 34 34 H 0.96994 * 120.00691 * 180.02562 * 14 13 11 35 35 H 1.08001 * 119.98674 * 0.02562 * 20 19 7 36 36 H 1.08005 * 120.00221 * 179.97438 * 21 20 19 37 37 H 1.08000 * 120.00742 * 179.71772 * 24 22 21 38 38 H 1.08001 * 119.98529 * 180.27799 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2363 -1.1211 -0.7647 5 6 2.2365 -1.1208 0.7652 6 1 3.1714 -0.8747 1.2687 7 6 1.3589 -2.1557 1.4720 8 1 0.6484 -1.6461 2.1228 9 7 2.2050 -3.0488 2.2749 10 6 2.4523 -2.4822 3.6075 11 6 3.2133 -3.4787 4.4437 12 1 3.4855 -4.4371 4.0270 13 6 3.5609 -3.1672 5.7410 14 7 3.2290 -2.0002 6.2486 15 14 4.5048 -4.4020 6.7772 16 1 5.9630 -4.1870 6.5977 17 1 4.1501 -4.2213 8.2078 18 1 4.1512 -5.7796 6.3498 19 6 0.6088 -2.9639 0.4447 20 6 -0.7558 -2.7986 0.2975 21 6 -1.4442 -3.5391 -0.6449 22 6 -0.7674 -4.4463 -1.4406 23 17 -1.6316 -5.3772 -2.6240 24 6 0.5972 -4.6158 -1.2885 25 6 1.2854 -3.8705 -0.3497 26 1 -0.3634 -0.0762 1.0249 27 1 -0.3634 0.9256 -0.4463 28 1 -0.3634 -0.8494 -0.5784 29 1 3.1714 -0.8755 -1.2682 30 1 1.6110 -1.8590 -1.2675 31 1 3.0726 -3.2484 1.8001 32 1 3.0372 -1.5675 3.5106 33 1 1.5008 -2.2558 4.0884 34 1 3.4739 -1.7809 7.1611 35 1 -1.2839 -2.0901 0.9184 36 1 -2.5104 -3.4102 -0.7595 37 1 1.1252 -5.3271 -1.9063 38 1 2.3515 -3.9996 -0.2341 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298817071.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:39 Heat of formation + Delta-G solvation = 23.042072 kcal Electronic energy + Delta-G solvation = -19427.034169 eV Core-core repulsion = 16487.979598 eV Total energy + Delta-G solvation = -2939.054571 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.27570 -38.78619 -37.22190 -36.45062 -34.46377 -32.14359 -31.90657 -29.56401 -28.66074 -26.20601 -24.06946 -23.20620 -23.17832 -21.74853 -20.40248 -18.70264 -17.90317 -17.00138 -16.89438 -16.35506 -16.05827 -15.78286 -15.10141 -14.81880 -14.41268 -14.36538 -14.22288 -13.91331 -13.78062 -13.35991 -13.22089 -12.82491 -12.75109 -12.69510 -12.45748 -12.30694 -12.16965 -12.02529 -11.79671 -11.62161 -11.29322 -10.86994 -10.77139 -10.62421 -9.84797 -9.40681 -9.07730 -8.20945 -6.31704 0.24025 0.41594 1.21417 1.41442 1.42779 1.54469 2.40277 2.70492 2.80284 3.12266 3.60568 3.75251 3.83169 3.91325 4.03621 4.06173 4.06876 4.39897 4.46458 4.48544 4.71043 4.71648 4.76215 4.89673 4.95723 5.00834 5.08047 5.09638 5.17477 5.23696 5.25620 5.32581 5.40939 5.46544 5.61730 5.71685 5.89613 6.04703 6.47308 6.72470 6.89732 7.39114 8.89995 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018589 B = 0.004420 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.917076 B = 6332.745126 C = 7275.599635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.145 4.145 3 H 0.104 0.896 4 C -0.160 4.160 5 C -0.192 4.192 6 H 0.084 0.916 7 C 0.157 3.843 8 H 0.064 0.936 9 N -0.674 5.674 10 C 0.214 3.786 11 C -0.532 4.532 12 H 0.063 0.937 13 C 0.003 3.997 14 N -0.934 5.934 15 Si 0.969 3.031 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.266 1.266 19 C -0.052 4.052 20 C -0.107 4.107 21 C -0.112 4.112 22 C -0.046 4.046 23 Cl -0.074 7.074 24 C -0.115 4.115 25 C -0.089 4.089 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.336 0.664 32 H -0.036 1.036 33 H -0.002 1.002 34 H 0.264 0.736 35 H 0.137 0.863 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.490 -0.413 -18.125 19.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.164 4.164 3 H 0.123 0.877 4 C -0.196 4.196 5 C -0.212 4.212 6 H 0.102 0.898 7 C 0.047 3.953 8 H 0.082 0.918 9 N -0.303 5.303 10 C 0.086 3.914 11 C -0.570 4.570 12 H 0.081 0.919 13 C -0.195 4.195 14 N -0.574 5.574 15 Si 0.794 3.206 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.190 1.190 19 C -0.053 4.053 20 C -0.126 4.126 21 C -0.130 4.130 22 C -0.073 4.073 23 Cl -0.045 7.045 24 C -0.133 4.133 25 C -0.108 4.108 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.154 0.846 32 H -0.018 1.018 33 H 0.016 0.984 34 H 0.073 0.927 35 H 0.155 0.845 36 H 0.167 0.833 37 H 0.163 0.837 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.085 -0.799 -17.841 19.604 hybrid contribution 1.218 0.410 0.803 1.515 sum -6.867 -0.390 -17.039 18.375 Atomic orbital electron populations 1.21623 0.92160 1.03022 1.01674 1.22407 0.96236 0.94042 1.03686 0.87748 1.23331 1.02809 1.01318 0.92163 1.23101 1.01129 1.01595 0.95416 0.89810 1.19932 0.94021 0.89560 0.91780 0.91767 1.60643 1.21139 1.45090 1.03466 1.19176 0.93895 0.92561 0.85734 1.21532 1.35309 1.02213 0.97971 0.91885 1.25893 0.97066 0.97365 0.99174 1.70081 1.48059 1.23218 1.16047 0.85384 0.78686 0.79144 0.77400 1.19707 1.20824 1.19017 1.19813 0.93898 0.96382 0.95229 1.21140 0.93288 0.99729 0.98397 1.21135 1.01049 0.95519 0.95323 1.20977 0.92919 0.97842 0.95515 1.98353 1.76889 1.72522 1.56749 1.21165 0.92366 1.00377 0.99407 1.20946 1.00632 0.94778 0.94423 0.92960 0.90980 0.91153 0.88255 0.87606 0.84599 1.01812 0.98431 0.92692 0.84516 0.83331 0.83664 0.85231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 8.12 71.98 0.58 -2.22 16 2 C -0.14 -3.60 6.41 -10.80 -0.07 -3.67 16 3 H 0.10 2.44 8.14 -2.38 -0.02 2.42 16 4 C -0.16 -3.82 8.93 30.59 0.27 -3.55 16 5 C -0.19 -5.84 5.60 -10.80 -0.06 -5.90 16 6 H 0.08 2.93 7.95 -2.39 -0.02 2.91 16 7 C 0.16 5.34 1.99 44.17 0.09 5.43 16 8 H 0.06 2.41 6.74 -2.39 -0.02 2.39 16 9 N -0.67 -28.14 5.86 -499.45 -2.93 -31.06 16 10 C 0.21 11.29 5.28 85.56 0.45 11.74 16 11 C -0.53 -30.17 9.36 25.60 0.24 -29.93 16 12 H 0.06 3.49 7.81 -2.91 -0.02 3.47 16 13 C 0.00 0.18 5.46 84.65 0.46 0.64 16 14 N -0.93 -56.23 13.29 21.45 0.28 -55.95 16 15 Si 0.97 44.27 29.54 68.60 2.03 46.30 16 16 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 17 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 19 C -0.05 -1.48 3.11 -19.86 -0.06 -1.54 16 20 C -0.11 -2.64 6.76 22.27 0.15 -2.49 16 21 C -0.11 -2.43 9.83 22.29 0.22 -2.21 16 22 C -0.05 -1.02 6.32 22.32 0.14 -0.88 16 23 Cl -0.07 -1.48 28.96 -2.72 -0.08 -1.56 16 24 C -0.11 -2.61 9.83 22.29 0.22 -2.39 16 25 C -0.09 -2.31 7.14 22.27 0.16 -2.16 16 26 H 0.05 1.23 6.97 -2.38 -0.02 1.22 16 27 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.07 1.49 5.01 -2.39 -0.01 1.47 16 29 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 30 H 0.11 2.48 5.16 -2.38 -0.01 2.47 16 31 H 0.34 13.31 8.11 -89.69 -0.73 12.58 16 32 H -0.04 -2.03 7.95 -2.38 -0.02 -2.04 16 33 H 0.00 -0.14 7.92 -2.39 -0.02 -0.16 16 34 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 35 H 0.14 3.10 7.11 -2.91 -0.02 3.08 16 36 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 37 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 38 H 0.13 3.33 7.64 -2.91 -0.02 3.31 16 Total: -1.00 -62.04 320.31 2.44 -59.60 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: 0.34 Total: 21.79 kcal Atomic # 6 Polarization: -41.92 SS G_CDS: 2.80 Total: -39.12 kcal Atomic # 7 Polarization: -84.37 SS G_CDS: -2.64 Total: -87.01 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -0.08 Total: -1.56 kcal Total: -62.04 2.44 -59.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298817071.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.645 kcal (2) G-P(sol) polarization free energy of solvation -62.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds