Wall clock time and date at job start Tue Mar 31 2020 01:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 115.55858 * 2 1 4 4 C 1.53005 * 117.49878 * 214.31180 * 2 1 3 5 5 C 1.53002 * 60.00006 * 252.51178 * 4 2 1 6 6 H 1.08993 * 117.50393 * 107.51712 * 5 4 2 7 7 C 1.53006 * 117.49770 * 252.51536 * 5 4 2 8 8 H 1.08996 * 109.47446 * 174.27393 * 7 5 4 9 9 N 1.46899 * 109.47180 * 54.27352 * 7 5 4 10 10 C 1.46897 * 110.99911 * 156.54413 * 9 7 5 11 11 C 1.50701 * 109.47283 * 185.29753 * 10 9 7 12 12 H 1.08002 * 119.99680 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00233 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00235 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 119.99799 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.46751 * 90.00401 * 15 13 11 17 17 H 1.48498 * 109.47179 * 210.00136 * 15 13 11 18 18 H 1.48501 * 109.47396 * 330.00769 * 15 13 11 19 19 C 1.50698 * 109.46531 * 294.27783 * 7 5 4 20 20 C 1.38250 * 119.98504 * 259.99450 * 19 7 5 21 21 C 1.38213 * 120.01028 * 179.70616 * 20 19 7 22 22 C 1.38353 * 119.99147 * 0.27503 * 21 20 19 23 23 Cl 1.73599 * 120.01371 * 180.02562 * 22 21 20 24 24 C 1.38355 * 119.97105 * 0.02562 * 22 21 20 25 25 C 1.38215 * 119.98588 * 359.97438 * 24 22 21 26 26 H 1.09002 * 109.47177 * 274.30909 * 1 2 3 27 27 H 1.08998 * 109.47440 * 34.30942 * 1 2 3 28 28 H 1.09003 * 109.47377 * 154.31416 * 1 2 3 29 29 H 1.08998 * 117.49636 * 145.01853 * 4 2 1 30 30 H 1.09006 * 117.49778 * 359.97438 * 4 2 1 31 31 H 1.00900 * 111.00283 * 280.49995 * 9 7 5 32 32 H 1.09009 * 109.47071 * 305.29522 * 10 9 7 33 33 H 1.08997 * 109.47499 * 65.29403 * 10 9 7 34 34 H 0.96993 * 119.99997 * 179.97438 * 14 13 11 35 35 H 1.07996 * 119.98951 * 359.97438 * 20 19 7 36 36 H 1.08003 * 120.00607 * 180.30151 * 21 20 19 37 37 H 1.07997 * 120.00266 * 179.97438 * 24 22 21 38 38 H 1.08004 * 119.98991 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2364 -1.1210 -0.7650 5 6 2.2364 -1.1210 0.7650 6 1 1.6116 -1.8588 1.2683 7 6 3.5490 -0.7759 1.4715 8 1 3.3781 -0.7149 2.5462 9 7 4.0442 0.5169 0.9802 10 6 4.9375 1.1460 1.9622 11 6 5.3209 2.5224 1.4832 12 1 4.9394 2.8927 0.5431 13 6 6.1594 3.3087 2.2446 14 7 6.4944 4.5097 1.8263 15 14 6.8197 2.6679 3.8702 16 1 8.1033 1.9581 3.6378 17 1 7.0445 3.8066 4.7966 18 1 5.8365 1.7295 4.4686 19 6 4.5701 -1.8466 1.1851 20 6 4.8210 -2.8307 2.1232 21 6 5.7530 -3.8164 1.8586 22 6 6.4390 -3.8150 0.6571 23 17 7.6092 -5.0532 0.3239 24 6 6.1919 -2.8264 -0.2787 25 6 5.2597 -1.8411 -0.0130 26 1 -0.3634 0.0772 1.0248 27 1 -0.3634 0.8488 -0.5792 28 1 -0.3634 -0.9261 -0.4454 29 1 3.1715 -0.8751 -1.2683 30 1 1.6112 -1.8588 -1.2680 31 1 4.5037 0.4128 0.0880 32 1 4.4254 1.2246 2.9213 33 1 5.8351 0.5386 2.0784 34 1 7.0840 5.0629 2.3621 35 1 4.2855 -2.8315 3.0610 36 1 5.9454 -4.5879 2.5895 37 1 6.7274 -2.8246 -1.2166 38 1 5.0665 -1.0696 -0.7437 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298817081.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:46 Heat of formation + Delta-G solvation = 39.127639 kcal Electronic energy + Delta-G solvation = -19360.660059 eV Core-core repulsion = 16422.303011 eV Total energy + Delta-G solvation = -2938.357048 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.89333 -37.85071 -36.41454 -34.81115 -32.55685 -31.13469 -30.67968 -28.53884 -27.15974 -25.13021 -22.83255 -22.05335 -21.21673 -20.41807 -19.26524 -17.34909 -16.71123 -15.84905 -15.52752 -15.12621 -14.37981 -14.24213 -14.06574 -13.53104 -13.42432 -13.17506 -12.97441 -12.61950 -12.45990 -12.22117 -11.95398 -11.68018 -11.46003 -11.35160 -11.18339 -10.92985 -10.78092 -10.74132 -10.41094 -9.85010 -9.64760 -9.44017 -9.33272 -8.99977 -8.63256 -8.47714 -7.61560 -6.08098 -4.05976 1.18824 1.32960 2.11280 3.27020 3.34655 3.36393 3.65988 4.05834 4.39953 4.75416 4.84636 4.87779 4.91439 5.09371 5.18730 5.25368 5.31872 5.36509 5.46391 5.62274 5.70872 5.77270 5.93028 5.96036 5.96688 6.02336 6.12586 6.23093 6.27191 6.30704 6.40170 6.60021 6.74410 6.83232 6.88256 6.96724 7.57022 7.81298 8.19299 8.60313 8.99827 9.53933 11.05138 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.010871 B = 0.006443 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.092451 B = 4344.816973 C = 6260.248387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.133 4.133 3 H 0.131 0.869 4 C -0.179 4.179 5 C -0.140 4.140 6 H 0.098 0.902 7 C 0.147 3.853 8 H 0.087 0.913 9 N -0.664 5.664 10 C 0.164 3.836 11 C -0.514 4.514 12 H 0.079 0.921 13 C 0.070 3.930 14 N -0.899 5.899 15 Si 0.875 3.125 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.267 1.267 19 C -0.086 4.086 20 C -0.105 4.105 21 C -0.111 4.111 22 C -0.042 4.042 23 Cl -0.082 7.082 24 C -0.106 4.106 25 C -0.098 4.098 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.046 0.954 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.334 0.666 32 H 0.027 0.973 33 H -0.019 1.019 34 H 0.264 0.736 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.572 -17.300 -2.548 18.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.151 4.151 3 H 0.148 0.852 4 C -0.216 4.216 5 C -0.158 4.158 6 H 0.116 0.884 7 C 0.035 3.965 8 H 0.105 0.895 9 N -0.294 5.294 10 C 0.037 3.963 11 C -0.552 4.552 12 H 0.097 0.903 13 C -0.132 4.132 14 N -0.538 5.538 15 Si 0.702 3.298 16 H -0.204 1.204 17 H -0.212 1.212 18 H -0.192 1.192 19 C -0.088 4.088 20 C -0.124 4.124 21 C -0.130 4.130 22 C -0.069 4.069 23 Cl -0.054 7.054 24 C -0.125 4.125 25 C -0.117 4.117 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.154 0.846 32 H 0.045 0.955 33 H -0.001 1.001 34 H 0.074 0.926 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.917 -16.857 -2.316 18.015 hybrid contribution 1.509 -0.991 0.830 1.987 sum -4.408 -17.849 -1.486 18.445 Atomic orbital electron populations 1.21380 0.94000 1.01079 1.01410 1.22476 0.93712 0.96529 1.02361 0.85154 1.23054 1.02599 1.02026 0.93887 1.22303 0.97819 1.02274 0.93434 0.88404 1.20140 0.90362 0.86586 0.99378 0.89541 1.60720 1.43666 1.18322 1.06647 1.20044 0.89535 0.94766 0.91971 1.21008 1.28192 0.97730 1.08252 0.90267 1.24877 0.95889 0.94747 0.97659 1.69890 1.36043 1.09317 1.38581 0.86867 0.79730 0.78713 0.84454 1.20376 1.21154 1.19189 1.20989 0.97231 0.96773 0.93775 1.21025 0.97795 0.94034 0.99503 1.20984 0.96705 0.99664 0.95607 1.20860 0.95920 0.93271 0.96852 1.98349 1.58083 1.53514 1.95428 1.21001 0.98596 0.93814 0.99077 1.20985 0.95504 0.98033 0.97128 0.92560 0.92400 0.93443 0.89165 0.89820 0.84599 0.95539 1.00102 0.92645 0.85306 0.85338 0.85127 0.84942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 10.19 37.16 0.38 -1.03 16 2 C -0.13 -1.82 5.74 -90.62 -0.52 -2.34 16 3 H 0.13 2.15 7.03 -51.93 -0.37 1.79 16 4 C -0.18 -2.26 9.13 -26.73 -0.24 -2.50 16 5 C -0.14 -1.88 5.49 -90.61 -0.50 -2.37 16 6 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 7 C 0.15 2.27 2.65 -68.86 -0.18 2.09 16 8 H 0.09 1.39 7.60 -51.93 -0.39 0.99 16 9 N -0.66 -12.55 4.41 -109.22 -0.48 -13.03 16 10 C 0.16 3.83 4.32 -4.98 -0.02 3.81 16 11 C -0.51 -14.29 9.92 -34.44 -0.34 -14.63 16 12 H 0.08 2.39 8.06 -52.49 -0.42 1.96 16 13 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 14 N -0.90 -27.38 13.96 55.43 0.77 -26.61 16 15 Si 0.87 21.52 27.47 -169.99 -4.67 16.85 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 19 C -0.09 -1.25 4.66 -104.62 -0.49 -1.73 16 20 C -0.10 -1.39 9.67 -39.59 -0.38 -1.77 16 21 C -0.11 -1.40 9.83 -39.55 -0.39 -1.79 16 22 C -0.04 -0.56 6.32 -39.50 -0.25 -0.81 16 23 Cl -0.08 -0.98 28.96 -51.86 -1.50 -2.48 16 24 C -0.11 -1.41 9.83 -39.55 -0.39 -1.80 16 25 C -0.10 -1.39 8.25 -39.59 -0.33 -1.71 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.49 7.90 -51.93 -0.41 0.08 16 29 H 0.09 1.17 5.98 -51.93 -0.31 0.85 16 30 H 0.08 0.95 8.05 -51.93 -0.42 0.53 16 31 H 0.33 6.15 6.02 -39.29 -0.24 5.91 16 32 H 0.03 0.64 6.99 -51.92 -0.36 0.27 16 33 H -0.02 -0.45 7.47 -51.93 -0.39 -0.83 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.13 1.47 8.04 -52.49 -0.42 1.04 16 36 H 0.13 1.36 8.06 -52.48 -0.42 0.93 16 37 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 38 H 0.13 1.81 5.19 -52.48 -0.27 1.54 16 LS Contribution 324.18 15.07 4.89 4.89 Total: -1.00 -29.38 324.18 -10.03 -39.40 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -5.28 Total: 5.66 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: -3.75 Total: -24.67 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.29 Total: -39.64 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.50 Total: -2.48 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.38 -10.03 -39.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298817081.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.530 kcal (2) G-P(sol) polarization free energy of solvation -29.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds