Wall clock time and date at job start Tue Mar 31 2020 01:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 115.55121 * 2 1 4 4 C 1.53073 * 117.51144 * 214.28025 * 2 1 3 5 5 C 1.53001 * 117.49714 * 145.67076 * 2 1 3 6 6 H 1.08996 * 117.49325 * 215.00361 * 5 2 1 7 7 C 1.53001 * 117.49937 * 359.97438 * 5 2 1 8 8 H 1.09002 * 109.47035 * 54.02174 * 7 5 2 9 9 N 1.46899 * 109.46655 * 174.02415 * 7 5 2 10 10 C 1.46892 * 110.99995 * 273.51441 * 9 7 5 11 11 C 1.50704 * 109.47433 * 176.95868 * 10 9 7 12 12 H 1.08009 * 119.99477 * 0.02562 * 11 10 9 13 13 C 1.37867 * 120.00517 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00295 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00152 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47016 * 89.99915 * 15 13 11 17 17 H 1.48502 * 109.47130 * 210.00098 * 15 13 11 18 18 H 1.48501 * 109.46872 * 329.99919 * 15 13 11 19 19 C 1.50704 * 109.47116 * 294.02674 * 7 5 2 20 20 C 1.38235 * 119.98921 * 114.12916 * 19 7 5 21 21 C 1.38213 * 120.01338 * 179.97438 * 20 19 7 22 22 C 1.38349 * 119.98542 * 359.97438 * 21 20 19 23 23 Cl 1.73605 * 120.00904 * 180.02562 * 22 21 20 24 24 C 1.38345 * 119.97700 * 0.02562 * 22 21 20 25 25 C 1.38215 * 119.98623 * 359.97438 * 24 22 21 26 26 H 1.08998 * 109.47079 * 282.65241 * 1 2 3 27 27 H 1.09001 * 109.47109 * 42.64937 * 1 2 3 28 28 H 1.09000 * 109.47087 * 162.64733 * 1 2 3 29 29 H 1.09000 * 117.49560 * 145.03960 * 4 2 1 30 30 H 1.08993 * 117.51368 * 359.97438 * 4 2 1 31 31 H 1.00893 * 111.00260 * 37.47324 * 9 7 5 32 32 H 1.09001 * 109.47427 * 296.95867 * 10 9 7 33 33 H 1.08997 * 109.47292 * 56.96056 * 10 9 7 34 34 H 0.96994 * 120.00579 * 179.97438 * 14 13 11 35 35 H 1.08001 * 119.98998 * 0.25715 * 20 19 7 36 36 H 1.08004 * 120.00251 * 180.02562 * 21 20 19 37 37 H 1.07998 * 120.01163 * 179.97438 * 24 22 21 38 38 H 1.08001 * 119.99637 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2371 -1.1218 -0.7647 5 6 2.2365 -1.1208 0.7654 6 1 3.1713 -0.8746 1.2689 7 6 1.3588 -2.1554 1.4726 8 1 0.6555 -2.5841 0.7587 9 7 2.2063 -3.2204 2.0253 10 6 2.4610 -4.2638 1.0231 11 6 3.3919 -5.2987 1.6007 12 1 3.7574 -5.1920 2.6115 13 6 3.7770 -6.3814 0.8390 14 7 3.3316 -6.5115 -0.3915 15 14 4.9315 -7.6637 1.5548 16 1 4.1378 -8.7285 2.2192 17 1 5.7457 -8.2599 0.4654 18 1 5.8288 -7.0219 2.5489 19 6 0.5973 -1.4889 2.5894 20 6 -0.7799 -1.3890 2.5231 21 6 -1.4788 -0.7783 3.5472 22 6 -0.7999 -0.2674 4.6390 23 17 -1.6773 0.4992 5.9261 24 6 0.5783 -0.3677 4.7049 25 6 1.2762 -0.9786 3.6801 26 1 -0.3633 0.2251 1.0027 27 1 -0.3633 0.7559 -0.6963 28 1 -0.3633 -0.9809 -0.3065 29 1 3.1724 -0.8761 -1.2677 30 1 1.6124 -1.8600 -1.2673 31 1 3.0712 -2.8448 2.3841 32 1 1.5196 -4.7373 0.7442 33 1 2.9180 -3.8162 0.1407 34 1 3.6028 -7.2730 -0.9276 35 1 -1.3101 -1.7923 1.6730 36 1 -2.5548 -0.7007 3.4954 37 1 1.1089 0.0313 5.5567 38 1 2.3522 -1.0566 3.7311 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298817083.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:49 Heat of formation + Delta-G solvation = 31.898695 kcal Electronic energy + Delta-G solvation = -19318.786800 eV Core-core repulsion = 16380.116281 eV Total energy + Delta-G solvation = -2938.670519 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -39.81546 -37.85878 -36.33471 -34.71602 -32.56286 -31.05904 -30.65383 -28.44678 -26.89790 -24.56744 -22.88780 -21.76128 -21.46434 -20.97144 -19.21674 -17.17282 -16.40832 -15.85380 -15.22614 -14.99602 -14.62753 -14.34596 -13.83698 -13.62093 -13.35938 -12.96009 -12.76952 -12.56127 -12.28290 -12.13052 -11.72687 -11.58023 -11.38636 -11.30670 -11.14568 -10.89798 -10.73679 -10.71950 -10.59071 -10.07459 -9.78807 -9.53915 -9.20062 -8.85871 -8.52351 -8.34617 -7.34417 -6.05563 -4.07447 1.30938 1.43734 2.18274 3.30823 3.36836 3.40128 3.77251 3.97310 4.40887 4.73138 4.93241 4.95216 4.97798 5.04908 5.30944 5.31621 5.41070 5.44310 5.47746 5.57272 5.76255 5.81836 5.86375 5.94314 5.97785 6.09878 6.12470 6.16022 6.32614 6.41060 6.44896 6.46601 6.81104 6.94810 7.21185 7.42894 7.74456 8.08850 8.31304 8.55653 9.01442 9.57540 11.05420 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018143 B = 0.004419 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.956580 B = 6334.231104 C = 7404.026322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.153 4.153 3 H 0.096 0.904 4 C -0.166 4.166 5 C -0.168 4.168 6 H 0.101 0.899 7 C 0.152 3.848 8 H 0.081 0.919 9 N -0.676 5.676 10 C 0.196 3.804 11 C -0.516 4.516 12 H 0.061 0.939 13 C 0.058 3.942 14 N -0.897 5.897 15 Si 0.897 3.103 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.034 4.034 20 C -0.102 4.102 21 C -0.114 4.114 22 C -0.044 4.044 23 Cl -0.087 7.087 24 C -0.112 4.112 25 C -0.087 4.087 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.331 0.669 32 H 0.026 0.974 33 H -0.006 1.006 34 H 0.261 0.739 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.414 15.218 4.787 17.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.172 4.172 3 H 0.115 0.885 4 C -0.203 4.203 5 C -0.188 4.188 6 H 0.119 0.881 7 C 0.041 3.959 8 H 0.099 0.901 9 N -0.305 5.305 10 C 0.069 3.931 11 C -0.554 4.554 12 H 0.079 0.921 13 C -0.144 4.144 14 N -0.536 5.536 15 Si 0.725 3.275 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.035 4.035 20 C -0.121 4.121 21 C -0.133 4.133 22 C -0.071 4.071 23 Cl -0.058 7.058 24 C -0.131 4.131 25 C -0.106 4.106 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.148 0.852 32 H 0.044 0.956 33 H 0.012 0.988 34 H 0.071 0.929 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.998 14.782 5.028 17.543 hybrid contribution 1.263 -0.302 -0.204 1.314 sum -6.736 14.480 4.824 16.683 Atomic orbital electron populations 1.21546 0.93187 1.01606 1.01986 1.22267 0.95298 0.94050 1.05581 0.88541 1.23084 1.02288 1.00969 0.93972 1.23206 1.00921 1.00035 0.94597 0.88110 1.20093 0.94600 0.89568 0.91662 0.90070 1.60836 1.20684 1.10898 1.38101 1.19583 0.96390 0.88252 0.88844 1.21177 1.27587 1.06883 0.99776 0.92054 1.24955 0.96546 0.98073 0.94807 1.69953 1.44953 1.30276 1.08443 0.86511 0.80736 0.81634 0.78593 1.20618 1.21313 1.19866 1.20003 0.93275 0.94713 0.95480 1.20995 0.93717 0.99011 0.98394 1.20922 1.00023 0.99349 0.92967 1.20815 0.92438 1.02413 0.91407 1.98343 1.76582 1.80446 1.50454 1.20981 0.91938 1.00506 0.99686 1.20892 1.00274 0.96703 0.92718 0.91506 0.92853 0.92493 0.89154 0.88624 0.85203 0.95610 0.98845 0.92921 0.85419 0.85454 0.85483 0.85410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.46 8.22 37.16 0.31 -1.16 16 2 C -0.15 -1.94 6.33 -90.58 -0.57 -2.52 16 3 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 4 C -0.17 -2.42 9.83 -26.69 -0.26 -2.69 16 5 C -0.17 -2.48 4.77 -90.62 -0.43 -2.91 16 6 H 0.10 1.47 7.99 -51.93 -0.41 1.06 16 7 C 0.15 2.49 1.80 -68.86 -0.12 2.37 16 8 H 0.08 1.43 6.68 -51.93 -0.35 1.08 16 9 N -0.68 -13.65 6.00 -109.22 -0.66 -14.30 16 10 C 0.20 4.91 5.23 -4.98 -0.03 4.89 16 11 C -0.52 -14.26 9.29 -34.44 -0.32 -14.58 16 12 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -26.32 13.29 55.43 0.74 -25.59 16 15 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 C -0.03 -0.49 4.01 -104.62 -0.42 -0.91 16 20 C -0.10 -1.34 6.99 -39.59 -0.28 -1.62 16 21 C -0.11 -1.39 9.83 -39.55 -0.39 -1.78 16 22 C -0.04 -0.55 6.32 -39.50 -0.25 -0.80 16 23 Cl -0.09 -0.99 28.96 -51.86 -1.50 -2.49 16 24 C -0.11 -1.41 9.83 -39.55 -0.39 -1.80 16 25 C -0.09 -1.19 9.21 -39.59 -0.36 -1.56 16 26 H 0.07 0.77 5.48 -51.93 -0.28 0.49 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.68 7.07 -51.93 -0.37 0.31 16 29 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.10 1.49 8.05 -51.93 -0.42 1.07 16 31 H 0.33 6.39 8.12 -39.30 -0.32 6.07 16 32 H 0.03 0.71 8.12 -51.93 -0.42 0.29 16 33 H -0.01 -0.17 8.02 -51.93 -0.42 -0.58 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.13 1.52 7.63 -52.49 -0.40 1.12 16 36 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 37 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.13 1.66 7.87 -52.49 -0.41 1.25 16 LS Contribution 327.94 15.07 4.94 4.94 Total: -1.00 -28.80 327.94 -10.58 -39.38 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -5.46 Total: 5.17 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: -3.62 Total: -23.54 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.08 Total: -39.89 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.50 Total: -2.49 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.80 -10.58 -39.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298817083.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.280 kcal (2) G-P(sol) polarization free energy of solvation -28.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds