Wall clock time and date at job start Tue Mar 31 2020 01:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 115.55121 * 2 1 4 4 C 1.53073 * 117.51144 * 214.28025 * 2 1 3 5 5 C 1.53001 * 117.49714 * 145.67076 * 2 1 3 6 6 H 1.08996 * 117.49325 * 215.00361 * 5 2 1 7 7 C 1.53001 * 117.49937 * 359.97438 * 5 2 1 8 8 H 1.09002 * 109.47035 * 54.02174 * 7 5 2 9 9 N 1.46899 * 109.46655 * 174.02415 * 7 5 2 10 10 C 1.46892 * 110.99995 * 273.51441 * 9 7 5 11 11 C 1.50704 * 109.47433 * 176.95868 * 10 9 7 12 12 H 1.08009 * 119.99477 * 0.02562 * 11 10 9 13 13 C 1.37867 * 120.00517 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00295 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00152 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47016 * 89.99915 * 15 13 11 17 17 H 1.48502 * 109.47130 * 210.00098 * 15 13 11 18 18 H 1.48501 * 109.46872 * 329.99919 * 15 13 11 19 19 C 1.50704 * 109.47116 * 294.02674 * 7 5 2 20 20 C 1.38235 * 119.98921 * 114.12916 * 19 7 5 21 21 C 1.38213 * 120.01338 * 179.97438 * 20 19 7 22 22 C 1.38349 * 119.98542 * 359.97438 * 21 20 19 23 23 Cl 1.73605 * 120.00904 * 180.02562 * 22 21 20 24 24 C 1.38345 * 119.97700 * 0.02562 * 22 21 20 25 25 C 1.38215 * 119.98623 * 359.97438 * 24 22 21 26 26 H 1.08998 * 109.47079 * 282.65241 * 1 2 3 27 27 H 1.09001 * 109.47109 * 42.64937 * 1 2 3 28 28 H 1.09000 * 109.47087 * 162.64733 * 1 2 3 29 29 H 1.09000 * 117.49560 * 145.03960 * 4 2 1 30 30 H 1.08993 * 117.51368 * 359.97438 * 4 2 1 31 31 H 1.00893 * 111.00260 * 37.47324 * 9 7 5 32 32 H 1.09001 * 109.47427 * 296.95867 * 10 9 7 33 33 H 1.08997 * 109.47292 * 56.96056 * 10 9 7 34 34 H 0.96994 * 120.00579 * 179.97438 * 14 13 11 35 35 H 1.08001 * 119.98998 * 0.25715 * 20 19 7 36 36 H 1.08004 * 120.00251 * 180.02562 * 21 20 19 37 37 H 1.07998 * 120.01163 * 179.97438 * 24 22 21 38 38 H 1.08001 * 119.99637 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2371 -1.1218 -0.7647 5 6 2.2365 -1.1208 0.7654 6 1 3.1713 -0.8746 1.2689 7 6 1.3588 -2.1554 1.4726 8 1 0.6555 -2.5841 0.7587 9 7 2.2063 -3.2204 2.0253 10 6 2.4610 -4.2638 1.0231 11 6 3.3919 -5.2987 1.6007 12 1 3.7574 -5.1920 2.6115 13 6 3.7770 -6.3814 0.8390 14 7 3.3316 -6.5115 -0.3915 15 14 4.9315 -7.6637 1.5548 16 1 4.1378 -8.7285 2.2192 17 1 5.7457 -8.2599 0.4654 18 1 5.8288 -7.0219 2.5489 19 6 0.5973 -1.4889 2.5894 20 6 -0.7799 -1.3890 2.5231 21 6 -1.4788 -0.7783 3.5472 22 6 -0.7999 -0.2674 4.6390 23 17 -1.6773 0.4992 5.9261 24 6 0.5783 -0.3677 4.7049 25 6 1.2762 -0.9786 3.6801 26 1 -0.3633 0.2251 1.0027 27 1 -0.3633 0.7559 -0.6963 28 1 -0.3633 -0.9809 -0.3065 29 1 3.1724 -0.8761 -1.2677 30 1 1.6124 -1.8600 -1.2673 31 1 3.0712 -2.8448 2.3841 32 1 1.5196 -4.7373 0.7442 33 1 2.9180 -3.8162 0.1407 34 1 3.6028 -7.2730 -0.9276 35 1 -1.3101 -1.7923 1.6730 36 1 -2.5548 -0.7007 3.4954 37 1 1.1089 0.0313 5.5567 38 1 2.3522 -1.0566 3.7311 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298817083.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:48 Heat of formation + Delta-G solvation = 17.064076 kcal Electronic energy + Delta-G solvation = -19319.430078 eV Core-core repulsion = 16380.116281 eV Total energy + Delta-G solvation = -2939.313796 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.94134 -38.96656 -37.29186 -36.36738 -34.47759 -32.12414 -31.94008 -29.60541 -28.53203 -26.13702 -24.07643 -23.26411 -22.84379 -22.11088 -20.40379 -18.65669 -17.97886 -17.08782 -16.64631 -16.27304 -16.15832 -15.70684 -14.98957 -14.84858 -14.37787 -14.31637 -14.17730 -14.01966 -13.78211 -13.29231 -13.12595 -12.88496 -12.78349 -12.65800 -12.42593 -12.33464 -12.29934 -12.06071 -11.89811 -11.63516 -11.31036 -10.92938 -10.71592 -10.61173 -9.85773 -9.43309 -9.02516 -8.20734 -6.31163 0.26534 0.43531 1.22053 1.41656 1.42944 1.53769 2.40503 2.72203 2.83921 3.13091 3.47815 3.76619 3.88739 3.94455 4.04794 4.06472 4.18080 4.41994 4.43422 4.45904 4.55723 4.73937 4.80725 4.88920 4.93734 4.98150 5.08782 5.12429 5.20671 5.22076 5.30824 5.33484 5.41220 5.46235 5.61915 5.73118 5.91420 6.04729 6.46415 6.73611 6.92254 7.39551 8.90475 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018143 B = 0.004419 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.956580 B = 6334.231104 C = 7404.026322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.125 4.125 3 H 0.116 0.884 4 C -0.183 4.183 5 C -0.180 4.180 6 H 0.104 0.896 7 C 0.159 3.841 8 H 0.062 0.938 9 N -0.676 5.676 10 C 0.215 3.785 11 C -0.535 4.535 12 H 0.063 0.937 13 C 0.005 3.995 14 N -0.932 5.932 15 Si 0.968 3.032 16 H -0.275 1.275 17 H -0.282 1.282 18 H -0.263 1.263 19 C -0.048 4.048 20 C -0.106 4.106 21 C -0.111 4.111 22 C -0.048 4.048 23 Cl -0.075 7.075 24 C -0.112 4.112 25 C -0.095 4.095 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.336 0.664 32 H -0.007 1.007 33 H -0.029 1.029 34 H 0.264 0.736 35 H 0.134 0.866 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.557 16.360 6.185 19.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.144 4.144 3 H 0.134 0.866 4 C -0.220 4.220 5 C -0.199 4.199 6 H 0.122 0.878 7 C 0.049 3.951 8 H 0.080 0.920 9 N -0.306 5.306 10 C 0.088 3.912 11 C -0.573 4.573 12 H 0.081 0.919 13 C -0.194 4.194 14 N -0.572 5.572 15 Si 0.792 3.208 16 H -0.201 1.201 17 H -0.208 1.208 18 H -0.187 1.187 19 C -0.049 4.049 20 C -0.125 4.125 21 C -0.130 4.130 22 C -0.075 4.075 23 Cl -0.046 7.046 24 C -0.131 4.131 25 C -0.113 4.113 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.065 0.935 29 H 0.113 0.887 30 H 0.095 0.905 31 H 0.154 0.846 32 H 0.011 0.989 33 H -0.011 1.011 34 H 0.073 0.927 35 H 0.152 0.848 36 H 0.166 0.834 37 H 0.163 0.837 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.151 15.951 6.440 19.035 hybrid contribution 1.228 -0.593 -0.613 1.495 sum -6.923 15.358 5.827 17.825 Atomic orbital electron populations 1.21568 0.92235 1.01748 1.02724 1.22369 0.95965 0.93842 1.02195 0.86593 1.23085 1.02823 1.02147 0.93923 1.23105 1.01292 1.01160 0.94391 0.87840 1.19973 0.93858 0.89000 0.92297 0.92013 1.60687 1.21182 1.11779 1.36909 1.19142 0.93978 0.89069 0.89044 1.21559 1.28053 1.07757 0.99955 0.91897 1.25868 0.98137 1.00275 0.95092 1.70081 1.46237 1.31113 1.09813 0.85409 0.78615 0.78712 0.78022 1.20101 1.20782 1.18728 1.19826 0.93799 0.95957 0.95321 1.21095 0.93215 0.99113 0.99075 1.21131 1.01057 0.98451 0.92321 1.20971 0.92653 1.02088 0.91751 1.98350 1.76263 1.80144 1.49832 1.21160 0.92164 0.99967 0.99784 1.20961 1.00568 0.97000 0.92813 0.91081 0.90939 0.93472 0.88707 0.90459 0.84606 0.98878 1.01083 0.92726 0.84781 0.83401 0.83716 0.85177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 8.22 71.98 0.59 -2.15 16 2 C -0.12 -3.03 6.33 -10.77 -0.07 -3.10 16 3 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 4 C -0.18 -5.45 9.83 30.62 0.30 -5.15 16 5 C -0.18 -5.34 4.77 -10.79 -0.05 -5.39 16 6 H 0.10 3.01 7.99 -2.39 -0.02 2.99 16 7 C 0.16 5.34 1.80 44.17 0.08 5.42 16 8 H 0.06 2.29 6.68 -2.39 -0.02 2.28 16 9 N -0.68 -28.05 6.00 -499.47 -3.00 -31.05 16 10 C 0.22 11.28 5.23 85.56 0.45 11.73 16 11 C -0.53 -30.15 9.29 25.60 0.24 -29.91 16 12 H 0.06 3.45 7.81 -2.91 -0.02 3.43 16 13 C 0.00 0.26 5.46 84.65 0.46 0.72 16 14 N -0.93 -55.93 13.29 21.44 0.28 -55.64 16 15 Si 0.97 44.10 29.54 68.60 2.03 46.13 16 16 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 18 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 19 C -0.05 -1.37 4.01 -19.86 -0.08 -1.45 16 20 C -0.11 -2.67 6.99 22.26 0.16 -2.52 16 21 C -0.11 -2.47 9.83 22.29 0.22 -2.26 16 22 C -0.05 -1.09 6.32 22.32 0.14 -0.95 16 23 Cl -0.07 -1.52 28.96 -2.72 -0.08 -1.60 16 24 C -0.11 -2.60 9.83 22.29 0.22 -2.38 16 25 C -0.09 -2.48 9.21 22.27 0.21 -2.28 16 26 H 0.07 1.52 5.48 -2.39 -0.01 1.50 16 27 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16 28 H 0.05 1.12 7.07 -2.39 -0.02 1.10 16 29 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.08 2.57 8.05 -2.39 -0.02 2.55 16 31 H 0.34 13.22 8.12 -89.70 -0.73 12.49 16 32 H -0.01 -0.40 8.12 -2.39 -0.02 -0.42 16 33 H -0.03 -1.60 8.02 -2.39 -0.02 -1.61 16 34 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 35 H 0.13 3.12 7.63 -2.91 -0.02 3.10 16 36 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 37 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 38 H 0.13 3.26 7.87 -2.91 -0.02 3.24 16 Total: -1.00 -61.91 327.94 2.42 -59.49 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.33 Total: 22.33 kcal Atomic # 6 Polarization: -42.52 SS G_CDS: 2.86 Total: -39.66 kcal Atomic # 7 Polarization: -83.98 SS G_CDS: -2.71 Total: -86.69 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.08 Total: -1.60 kcal Total: -61.91 2.42 -59.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298817083.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.554 kcal (2) G-P(sol) polarization free energy of solvation -61.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds