Wall clock time and date at job start Tue Mar 31 2020 01:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46909 * 2 1 4 4 C 1.50697 * 109.47035 * 240.00337 * 2 1 3 5 5 O 1.21286 * 119.99775 * 325.06128 * 4 2 1 6 6 N 1.34773 * 120.00154 * 145.33787 * 4 2 1 7 7 C 1.46933 * 120.62828 * 4.67340 * 6 4 2 8 8 C 1.53623 * 108.53992 * 126.37157 * 7 6 4 9 9 C 1.53038 * 109.24254 * 54.85618 * 8 7 6 10 10 C 1.50701 * 109.45021 * 178.49316 * 9 8 7 11 11 H 1.07997 * 120.00120 * 120.05422 * 10 9 8 12 12 C 1.37884 * 119.99935 * 300.06851 * 10 9 8 13 13 N 1.31509 * 120.00121 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99791 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46953 * 59.99531 * 14 12 10 16 16 H 1.48501 * 109.47049 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.46686 * 299.99679 * 14 12 10 18 18 C 1.53034 * 109.53959 * 298.51020 * 9 8 7 19 19 C 1.46924 * 120.63231 * 184.95690 * 6 4 2 20 20 C 1.53001 * 109.47247 * 120.00224 * 2 1 3 21 21 F 1.39890 * 109.47090 * 180.02562 * 20 2 1 22 22 F 1.39897 * 109.47019 * 300.00406 * 20 2 1 23 23 F 1.39908 * 109.46761 * 59.99644 * 20 2 1 24 24 H 1.09004 * 109.47107 * 184.99722 * 1 2 3 25 25 H 1.08998 * 109.47140 * 305.00049 * 1 2 3 26 26 H 1.09002 * 109.47147 * 64.99883 * 1 2 3 27 27 H 1.09002 * 109.58623 * 246.20174 * 7 6 4 28 28 H 1.09000 * 109.58586 * 6.62617 * 7 6 4 29 29 H 1.08999 * 109.63662 * 294.86473 * 8 7 6 30 30 H 1.08999 * 109.42895 * 174.72380 * 8 7 6 31 31 H 1.09006 * 109.45994 * 58.53114 * 9 8 7 32 32 H 0.96997 * 120.00380 * 180.02562 * 13 12 10 33 33 H 1.09002 * 109.49752 * 301.41172 * 18 9 8 34 34 H 1.09003 * 109.49857 * 181.31721 * 18 9 8 35 35 H 1.09003 * 109.58720 * 353.36882 * 19 6 4 36 36 H 1.09001 * 109.58930 * 113.65588 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 1.4226 -1.6606 -1.6734 6 7 3.1621 -0.2931 -1.8355 7 6 3.9697 0.7861 -1.2507 8 6 5.4158 0.2891 -1.1032 9 6 5.9193 -0.2076 -2.4603 10 6 7.3501 -0.6621 -2.3290 11 1 7.6154 -1.6837 -2.5575 12 6 8.3206 0.2265 -1.9168 13 7 7.9977 1.4706 -1.6388 14 14 10.0941 -0.3371 -1.7534 15 1 10.5839 -0.8182 -3.0701 16 1 10.9346 0.7994 -1.2981 17 1 10.1735 -1.4402 -0.7625 18 6 5.0534 -1.3787 -2.9301 19 6 3.6062 -0.9045 -3.0955 20 6 2.0401 -0.7213 1.2492 21 9 3.4390 -0.7208 1.2495 22 9 1.5737 -0.0619 2.3915 23 9 1.5736 -2.0403 1.2491 24 1 -0.3633 -1.0238 0.0895 25 1 -0.3633 0.5894 0.8418 26 1 -0.3633 0.4343 -0.9314 27 1 3.9448 1.6571 -1.9056 28 1 3.5711 1.0512 -0.2714 29 1 5.4508 -0.5269 -0.3814 30 1 6.0472 1.1079 -0.7584 31 1 5.8608 0.6020 -3.1879 32 1 8.6804 2.0958 -1.3492 33 1 5.0919 -2.1790 -2.1911 34 1 5.4270 -1.7471 -3.8856 35 1 2.9678 -1.7554 -3.3337 36 1 3.5499 -0.1693 -3.8982 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334425797.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:46 Heat of formation + Delta-G solvation = -200.377458 kcal Electronic energy + Delta-G solvation = -23525.536687 eV Core-core repulsion = 19594.228014 eV Total energy + Delta-G solvation = -3931.308674 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.09647 -47.59631 -47.51397 -39.98855 -37.03184 -34.07282 -33.49047 -31.20673 -30.12093 -26.75974 -26.15460 -23.97080 -22.75824 -22.02307 -19.95112 -18.92780 -18.58343 -18.24734 -17.37136 -16.93393 -16.21259 -15.48165 -14.65687 -14.59139 -14.45249 -14.36728 -13.95443 -13.81624 -13.65877 -13.58343 -13.38484 -13.09525 -12.81989 -12.75901 -12.68709 -12.29228 -11.93007 -11.67597 -11.43646 -11.21884 -10.94036 -10.70052 -10.44381 -10.14741 -9.81374 -9.55344 -9.22900 -8.99286 -8.41248 -8.14732 -6.05792 -4.11669 2.23951 2.99823 3.11441 3.29057 3.33687 3.36983 3.75858 3.96700 4.06293 4.39358 4.58471 4.76402 4.82275 5.23822 5.38846 5.45975 5.50708 5.70749 5.84342 5.90133 5.97193 6.06124 6.19301 6.34375 6.58643 6.79037 6.96476 7.09637 7.22117 7.60698 7.71514 7.88413 7.99639 8.25233 8.37018 8.91201 9.53601 10.99904 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.025540 B = 0.005489 C = 0.005003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.050660 B = 5099.973529 C = 5595.200011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.165 4.165 3 H 0.134 0.866 4 C 0.514 3.486 5 O -0.535 6.535 6 N -0.589 5.589 7 C 0.097 3.903 8 C -0.122 4.122 9 C 0.049 3.951 10 C -0.512 4.512 11 H 0.055 0.945 12 C 0.062 3.938 13 N -0.892 5.892 14 Si 0.891 3.109 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.124 4.124 19 C 0.111 3.889 20 C 0.463 3.537 21 F -0.169 7.169 22 F -0.180 7.180 23 F -0.173 7.173 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.106 0.894 31 H 0.028 0.972 32 H 0.261 0.739 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.879 0.873 3.915 13.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.187 4.187 3 H 0.152 0.848 4 C 0.299 3.701 5 O -0.412 6.412 6 N -0.320 5.320 7 C -0.024 4.024 8 C -0.160 4.160 9 C 0.030 3.970 10 C -0.551 4.551 11 H 0.073 0.927 12 C -0.139 4.139 13 N -0.531 5.531 14 Si 0.719 3.281 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.162 4.162 19 C -0.010 4.010 20 C 0.408 3.592 21 F -0.150 7.150 22 F -0.162 7.162 23 F -0.155 7.155 24 H 0.098 0.902 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.124 0.876 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.073 0.527 3.749 13.611 hybrid contribution 1.246 -0.191 0.429 1.332 sum -11.827 0.337 4.179 12.548 Atomic orbital electron populations 1.21688 0.89210 1.04693 1.03918 1.22723 1.01561 1.02945 0.91496 0.84804 1.19679 0.81418 0.84269 0.84724 1.90689 1.57737 1.27169 1.65627 1.48274 1.22249 1.36961 1.24547 1.22299 0.94407 0.88837 0.96893 1.22094 0.90643 1.02521 1.00743 1.18642 0.93220 0.92398 0.92730 1.21150 0.92197 0.96696 1.45011 0.92721 1.24948 0.98836 0.94890 0.95200 1.69809 1.33507 1.03635 1.46175 0.86670 0.84728 0.78171 0.78522 1.20303 1.21293 1.20308 1.22016 0.92515 1.00551 1.01112 1.21784 0.97412 0.97896 0.83925 1.20053 0.76177 0.77998 0.84950 1.93291 1.28779 1.96274 1.96637 1.93179 1.88568 1.80784 1.53663 1.93222 1.88372 1.37188 1.96696 0.90212 0.90621 0.90134 0.91421 0.91727 0.93709 0.87632 0.95412 0.92888 0.92797 0.91922 0.90146 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.53 37.16 0.32 -1.13 16 2 C -0.16 -2.13 2.04 -91.77 -0.19 -2.32 16 3 H 0.13 1.44 6.16 -51.93 -0.32 1.12 16 4 C 0.51 8.52 6.18 -10.99 -0.07 8.45 16 5 O -0.53 -10.20 15.73 5.55 0.09 -10.11 16 6 N -0.59 -10.13 2.97 -172.50 -0.51 -10.64 16 7 C 0.10 1.66 5.63 -3.48 -0.02 1.64 16 8 C -0.12 -2.63 5.17 -26.39 -0.14 -2.77 16 9 C 0.05 1.13 2.06 -91.73 -0.19 0.94 16 10 C -0.51 -13.49 8.56 -34.44 -0.29 -13.78 16 11 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 12 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 13 N -0.89 -24.11 11.31 55.43 0.63 -23.48 16 14 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 C -0.12 -2.48 5.30 -26.62 -0.14 -2.63 16 19 C 0.11 1.95 6.44 -3.71 -0.02 1.93 16 20 C 0.46 6.61 2.68 37.16 0.10 6.71 16 21 F -0.17 -2.77 15.17 2.25 0.03 -2.74 16 22 F -0.18 -2.31 16.89 2.25 0.04 -2.27 16 23 F -0.17 -2.72 16.37 2.25 0.04 -2.69 16 24 H 0.08 0.93 7.54 -51.93 -0.39 0.54 16 25 H 0.07 0.62 7.94 -51.93 -0.41 0.21 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.06 0.95 4.64 -51.93 -0.24 0.71 16 29 H 0.04 1.02 7.84 -51.93 -0.41 0.61 16 30 H 0.11 2.54 6.03 -51.93 -0.31 2.23 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 33 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.08 1.40 7.00 -51.93 -0.36 1.04 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 299.24 15.07 4.51 4.51 Total: -1.00 -28.58 299.24 -5.46 -34.04 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -4.53 Total: -0.96 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -0.74 Total: -1.39 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.12 Total: -34.12 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 9 Polarization: -7.81 SS G_CDS: 0.11 Total: -7.70 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.58 -5.46 -34.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334425797.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.334 kcal (2) G-P(sol) polarization free energy of solvation -28.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds