Wall clock time and date at job start Tue Mar 31 2020 01:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47197 * 2 1 4 4 C 1.50698 * 109.46815 * 119.99655 * 2 1 3 5 5 O 1.21283 * 119.99995 * 94.71487 * 4 2 1 6 6 N 1.34772 * 120.00275 * 274.70502 * 4 2 1 7 7 C 1.46924 * 120.63394 * 184.76585 * 6 4 2 8 8 C 1.53627 * 108.54723 * 126.37076 * 7 6 4 9 9 C 1.53037 * 109.23738 * 54.85570 * 8 7 6 10 10 C 1.50706 * 109.44612 * 178.49817 * 9 8 7 11 11 H 1.08000 * 119.99679 * 120.06272 * 10 9 8 12 12 C 1.37876 * 120.00393 * 300.06472 * 10 9 8 13 13 N 1.31522 * 119.99595 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00384 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47239 * 59.99404 * 14 12 10 16 16 H 1.48493 * 109.47253 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.46666 * 299.99791 * 14 12 10 18 18 C 1.53041 * 109.54278 * 298.51177 * 9 8 7 19 19 C 1.46930 * 120.63191 * 5.04795 * 6 4 2 20 20 C 1.52995 * 109.47090 * 239.99514 * 2 1 3 21 21 F 1.39900 * 109.47581 * 300.00417 * 20 2 1 22 22 F 1.39904 * 109.46696 * 60.00173 * 20 2 1 23 23 F 1.39899 * 109.47072 * 179.97438 * 20 2 1 24 24 H 1.08997 * 109.47301 * 64.79203 * 1 2 3 25 25 H 1.08997 * 109.47321 * 184.79923 * 1 2 3 26 26 H 1.09007 * 109.46752 * 304.79736 * 1 2 3 27 27 H 1.08999 * 109.58988 * 246.20954 * 7 6 4 28 28 H 1.09000 * 109.58545 * 6.62979 * 7 6 4 29 29 H 1.08999 * 109.62916 * 294.87014 * 8 7 6 30 30 H 1.08997 * 109.43387 * 174.72572 * 8 7 6 31 31 H 1.09003 * 109.46307 * 58.53726 * 9 8 7 32 32 H 0.96993 * 119.99701 * 180.02562 * 13 12 10 33 33 H 1.08994 * 109.49581 * 301.41726 * 18 9 8 34 34 H 1.08999 * 109.52283 * 181.33226 * 18 9 8 35 35 H 1.09000 * 109.58140 * 353.37163 * 19 6 4 36 36 H 1.09000 * 109.58556 * 113.64933 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.3158 -1.8884 1.1774 6 7 2.1666 -0.0366 2.3900 7 6 2.7523 -0.6868 3.5702 8 6 3.9095 0.1834 4.0837 9 6 3.3984 1.6034 4.3376 10 6 4.5213 2.4519 4.8765 11 1 4.8391 3.3325 4.3380 12 6 5.1429 2.1040 6.0570 13 7 4.7556 1.0319 6.7130 14 14 6.5342 3.1561 6.7254 15 1 6.0380 4.5335 6.9736 16 1 7.0301 2.5714 7.9971 17 1 7.6411 3.1994 5.7363 18 6 2.8881 2.2059 3.0266 19 6 1.7245 1.3604 2.4996 20 6 2.0400 -0.7213 -1.2491 21 9 1.5736 -2.0403 -1.2492 22 9 1.5736 -0.0618 -2.3914 23 9 3.4390 -0.7208 -1.2494 24 1 -0.3634 0.4377 -0.9298 25 1 -0.3634 -1.0240 0.0860 26 1 -0.3633 0.5865 0.8440 27 1 1.9938 -0.7863 4.3467 28 1 3.1283 -1.6723 3.2955 29 1 4.7053 0.2108 3.3393 30 1 4.2942 -0.2364 5.0130 31 1 2.5860 1.5726 5.0636 32 1 5.1926 0.7874 7.5437 33 1 3.6935 2.2143 2.2923 34 1 2.5461 3.2257 3.2032 35 1 1.4222 1.7260 1.5183 36 1 0.8823 1.4240 3.1886 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334425799.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:50 Heat of formation + Delta-G solvation = -201.786950 kcal Electronic energy + Delta-G solvation = -23111.890151 eV Core-core repulsion = 19180.520357 eV Total energy + Delta-G solvation = -3931.369794 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 2.77 seconds Orbital eigenvalues (eV) -50.06898 -47.60341 -47.45063 -40.02951 -37.02100 -34.33250 -33.42313 -31.13747 -30.18363 -26.66856 -26.32467 -23.96218 -22.86051 -22.01887 -20.07390 -18.97514 -18.48642 -18.27185 -17.27487 -16.90101 -16.23830 -15.32046 -15.01141 -14.61938 -14.45295 -14.32046 -13.94280 -13.76706 -13.67215 -13.61251 -13.41547 -13.26057 -12.96767 -12.82671 -12.49040 -12.29461 -12.02026 -11.84780 -11.50657 -11.21031 -10.96208 -10.74157 -10.51417 -10.16282 -9.73284 -9.65935 -9.25301 -9.02226 -8.43622 -8.16153 -6.07276 -4.14339 2.44176 2.77119 3.16468 3.27088 3.32696 3.34750 3.66917 4.00843 4.06127 4.37114 4.56218 4.71161 4.81171 5.22539 5.23713 5.26307 5.36830 5.61938 5.71056 5.80839 5.92721 6.14988 6.28659 6.33858 6.49640 6.67504 6.84992 7.09152 7.22918 7.62362 7.67154 7.84841 7.98692 8.25240 8.33669 8.88655 9.51296 10.98232 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.033219 B = 0.004393 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.683585 B = 6372.724317 C = 6437.164330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.166 4.166 3 H 0.135 0.865 4 C 0.518 3.482 5 O -0.535 6.535 6 N -0.590 5.590 7 C 0.109 3.891 8 C -0.123 4.123 9 C 0.049 3.951 10 C -0.516 4.516 11 H 0.055 0.945 12 C 0.062 3.938 13 N -0.890 5.890 14 Si 0.892 3.108 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.278 1.278 18 C -0.126 4.126 19 C 0.100 3.900 20 C 0.471 3.529 21 F -0.167 7.167 22 F -0.184 7.184 23 F -0.177 7.177 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.040 0.960 30 H 0.106 0.894 31 H 0.028 0.972 32 H 0.262 0.738 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.075 -0.318 -12.341 15.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.189 4.189 3 H 0.153 0.847 4 C 0.303 3.697 5 O -0.412 6.412 6 N -0.322 5.322 7 C -0.012 4.012 8 C -0.162 4.162 9 C 0.030 3.970 10 C -0.554 4.554 11 H 0.073 0.927 12 C -0.139 4.139 13 N -0.529 5.529 14 Si 0.720 3.280 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.164 4.164 19 C -0.022 4.022 20 C 0.417 3.583 21 F -0.149 7.149 22 F -0.166 7.166 23 F -0.159 7.159 24 H 0.099 0.901 25 H 0.095 0.905 26 H 0.104 0.896 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.058 0.942 30 H 0.124 0.876 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.861 -1.065 -12.195 15.111 hybrid contribution 0.931 0.626 0.226 1.144 sum -7.930 -0.440 -11.969 14.364 Atomic orbital electron populations 1.21800 0.89252 1.04747 1.04591 1.22673 1.01451 1.02972 0.91759 0.84737 1.19625 0.79007 0.87048 0.84046 1.90762 1.50868 1.15013 1.84569 1.48176 1.59757 1.13237 1.11047 1.22073 0.97033 0.97271 0.84784 1.22122 0.94654 0.97650 1.01764 1.18638 0.96078 0.91818 0.90436 1.21127 1.17552 1.10052 1.06645 0.92724 1.24961 0.97072 0.95161 0.96701 1.69824 1.41896 1.24703 1.16472 0.86664 0.82529 0.80592 0.78260 1.20295 1.21276 1.20314 1.22040 0.95841 0.98087 1.00434 1.22020 0.98651 0.80734 1.00816 1.19855 0.75801 0.78112 0.84574 1.93220 1.88186 1.36843 1.96615 1.93166 1.88575 1.80944 1.53872 1.93215 1.29564 1.96408 1.96696 0.90136 0.90518 0.89649 0.91900 0.90406 0.94158 0.87633 0.95368 0.92816 0.92695 0.91782 0.91205 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.78 37.16 0.33 -1.04 16 2 C -0.17 -2.04 1.85 -91.78 -0.17 -2.21 16 3 H 0.13 1.38 6.47 -51.93 -0.34 1.05 16 4 C 0.52 8.52 6.53 -10.99 -0.07 8.45 16 5 O -0.53 -10.64 14.62 5.55 0.08 -10.56 16 6 N -0.59 -9.86 2.97 -172.50 -0.51 -10.37 16 7 C 0.11 2.08 6.45 -3.49 -0.02 2.06 16 8 C -0.12 -2.74 5.17 -26.39 -0.14 -2.88 16 9 C 0.05 1.10 2.06 -91.73 -0.19 0.91 16 10 C -0.52 -13.28 8.56 -34.44 -0.29 -13.58 16 11 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 12 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 13 N -0.89 -24.21 11.31 55.43 0.63 -23.58 16 14 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 C -0.13 -2.25 5.30 -26.61 -0.14 -2.39 16 19 C 0.10 1.44 5.90 -3.71 -0.02 1.41 16 20 C 0.47 6.45 2.48 37.15 0.09 6.54 16 21 F -0.17 -2.56 15.52 2.25 0.03 -2.52 16 22 F -0.18 -2.21 16.71 2.25 0.04 -2.17 16 23 F -0.18 -2.78 16.98 2.25 0.04 -2.75 16 24 H 0.08 0.60 7.67 -51.93 -0.40 0.20 16 25 H 0.08 0.78 7.94 -51.93 -0.41 0.37 16 26 H 0.08 0.68 7.35 -51.92 -0.38 0.30 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.08 1.53 7.03 -51.93 -0.37 1.16 16 29 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.11 2.64 6.03 -51.93 -0.31 2.33 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 0.76 5.04 -51.93 -0.26 0.50 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 299.79 15.07 4.52 4.52 Total: -1.00 -29.03 299.79 -5.47 -34.50 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -4.55 Total: -1.42 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -0.72 Total: -1.17 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: 0.12 Total: -33.95 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.08 Total: -10.56 kcal Atomic # 9 Polarization: -7.55 SS G_CDS: 0.11 Total: -7.44 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.03 -5.47 -34.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334425799.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.288 kcal (2) G-P(sol) polarization free energy of solvation -29.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.77 seconds