Wall clock time and date at job start Tue Mar 31 2020 01:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47197 * 2 1 4 4 C 1.50698 * 109.46815 * 119.99655 * 2 1 3 5 5 O 1.21283 * 119.99995 * 94.71487 * 4 2 1 6 6 N 1.34772 * 120.00275 * 274.70502 * 4 2 1 7 7 C 1.46924 * 120.63394 * 184.76585 * 6 4 2 8 8 C 1.53627 * 108.54723 * 126.37076 * 7 6 4 9 9 C 1.53037 * 109.23738 * 54.85570 * 8 7 6 10 10 C 1.50706 * 109.44612 * 178.49817 * 9 8 7 11 11 H 1.08000 * 119.99679 * 120.06272 * 10 9 8 12 12 C 1.37876 * 120.00393 * 300.06472 * 10 9 8 13 13 N 1.31522 * 119.99595 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00384 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47239 * 59.99404 * 14 12 10 16 16 H 1.48493 * 109.47253 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.46666 * 299.99791 * 14 12 10 18 18 C 1.53041 * 109.54278 * 298.51177 * 9 8 7 19 19 C 1.46930 * 120.63191 * 5.04795 * 6 4 2 20 20 C 1.52995 * 109.47090 * 239.99514 * 2 1 3 21 21 F 1.39900 * 109.47581 * 300.00417 * 20 2 1 22 22 F 1.39904 * 109.46696 * 60.00173 * 20 2 1 23 23 F 1.39899 * 109.47072 * 179.97438 * 20 2 1 24 24 H 1.08997 * 109.47301 * 64.79203 * 1 2 3 25 25 H 1.08997 * 109.47321 * 184.79923 * 1 2 3 26 26 H 1.09007 * 109.46752 * 304.79736 * 1 2 3 27 27 H 1.08999 * 109.58988 * 246.20954 * 7 6 4 28 28 H 1.09000 * 109.58545 * 6.62979 * 7 6 4 29 29 H 1.08999 * 109.62916 * 294.87014 * 8 7 6 30 30 H 1.08997 * 109.43387 * 174.72572 * 8 7 6 31 31 H 1.09003 * 109.46307 * 58.53726 * 9 8 7 32 32 H 0.96993 * 119.99701 * 180.02562 * 13 12 10 33 33 H 1.08994 * 109.49581 * 301.41726 * 18 9 8 34 34 H 1.08999 * 109.52283 * 181.33226 * 18 9 8 35 35 H 1.09000 * 109.58140 * 353.37163 * 19 6 4 36 36 H 1.09000 * 109.58556 * 113.64933 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.3158 -1.8884 1.1774 6 7 2.1666 -0.0366 2.3900 7 6 2.7523 -0.6868 3.5702 8 6 3.9095 0.1834 4.0837 9 6 3.3984 1.6034 4.3376 10 6 4.5213 2.4519 4.8765 11 1 4.8391 3.3325 4.3380 12 6 5.1429 2.1040 6.0570 13 7 4.7556 1.0319 6.7130 14 14 6.5342 3.1561 6.7254 15 1 6.0380 4.5335 6.9736 16 1 7.0301 2.5714 7.9971 17 1 7.6411 3.1994 5.7363 18 6 2.8881 2.2059 3.0266 19 6 1.7245 1.3604 2.4996 20 6 2.0400 -0.7213 -1.2491 21 9 1.5736 -2.0403 -1.2492 22 9 1.5736 -0.0618 -2.3914 23 9 3.4390 -0.7208 -1.2494 24 1 -0.3634 0.4377 -0.9298 25 1 -0.3634 -1.0240 0.0860 26 1 -0.3633 0.5865 0.8440 27 1 1.9938 -0.7863 4.3467 28 1 3.1283 -1.6723 3.2955 29 1 4.7053 0.2108 3.3393 30 1 4.2942 -0.2364 5.0130 31 1 2.5860 1.5726 5.0636 32 1 5.1926 0.7874 7.5437 33 1 3.6935 2.2143 2.2923 34 1 2.5461 3.2257 3.2032 35 1 1.4222 1.7260 1.5183 36 1 0.8823 1.4240 3.1886 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334425799.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:48 Heat of formation + Delta-G solvation = -218.438749 kcal Electronic energy + Delta-G solvation = -23112.612227 eV Core-core repulsion = 19180.520357 eV Total energy + Delta-G solvation = -3932.091870 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -51.14191 -48.66079 -48.56858 -41.35840 -38.52825 -35.63382 -34.92620 -32.84222 -31.67786 -28.13413 -27.45850 -25.43055 -24.28837 -23.43809 -21.49601 -20.27245 -19.67664 -19.40996 -18.55402 -18.32524 -17.85640 -16.62865 -16.51510 -16.26461 -15.54354 -15.46586 -15.04665 -15.02277 -14.87475 -14.78082 -14.70700 -14.62730 -14.31475 -14.26843 -13.90012 -13.33844 -13.26635 -13.04003 -12.97329 -12.79077 -12.49141 -12.40703 -12.15249 -11.92338 -11.41915 -11.19674 -10.87762 -10.75384 -10.39383 -9.63153 -8.07177 -6.20555 1.26271 1.43052 1.44405 1.50941 1.61927 1.95730 2.44569 2.64087 2.94414 2.99116 3.20153 3.50123 3.80846 3.86455 4.12496 4.28610 4.33165 4.48602 4.58587 4.65566 4.68572 4.68956 4.88218 4.97887 5.11309 5.15568 5.25620 5.44679 5.50517 5.66104 5.99434 6.11848 6.36594 6.39177 6.91385 6.95416 7.47954 8.96049 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.033219 B = 0.004393 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.683585 B = 6372.724317 C = 6437.164330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.156 4.156 3 H 0.164 0.836 4 C 0.514 3.486 5 O -0.575 6.575 6 N -0.593 5.593 7 C 0.121 3.879 8 C -0.113 4.113 9 C 0.044 3.956 10 C -0.532 4.532 11 H 0.054 0.946 12 C 0.014 3.986 13 N -0.916 5.916 14 Si 0.948 3.052 15 H -0.269 1.269 16 H -0.288 1.288 17 H -0.276 1.276 18 C -0.120 4.120 19 C 0.103 3.897 20 C 0.467 3.533 21 F -0.180 7.180 22 F -0.171 7.171 23 F -0.193 7.193 24 H 0.106 0.894 25 H 0.064 0.936 26 H 0.106 0.894 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.022 0.978 30 H 0.072 0.928 31 H 0.007 0.993 32 H 0.260 0.740 33 H 0.048 0.952 34 H 0.078 0.922 35 H 0.118 0.882 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.472 1.394 -13.768 17.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 H 0.181 0.819 4 C 0.301 3.699 5 O -0.455 6.455 6 N -0.324 5.324 7 C -0.001 4.001 8 C -0.152 4.152 9 C 0.025 3.975 10 C -0.570 4.570 11 H 0.072 0.928 12 C -0.185 4.185 13 N -0.556 5.556 14 Si 0.774 3.226 15 H -0.194 1.194 16 H -0.214 1.214 17 H -0.202 1.202 18 C -0.158 4.158 19 C -0.018 4.018 20 C 0.412 3.588 21 F -0.162 7.162 22 F -0.152 7.152 23 F -0.175 7.175 24 H 0.125 0.875 25 H 0.083 0.917 26 H 0.124 0.876 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.090 0.910 31 H 0.025 0.975 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.135 0.865 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.273 0.678 -13.638 17.088 hybrid contribution 1.384 0.083 0.654 1.532 sum -8.890 0.761 -12.985 15.755 Atomic orbital electron populations 1.21914 0.86499 1.04810 1.06938 1.22749 1.03485 1.03220 0.88382 0.81856 1.20315 0.77979 0.86734 0.84840 1.90747 1.52467 1.17084 1.85243 1.48187 1.59573 1.14214 1.10431 1.21691 0.96104 0.96208 0.86121 1.21872 0.95333 0.98271 0.99690 1.18630 0.94597 0.91731 0.92541 1.21578 1.18353 1.10343 1.06714 0.92797 1.25684 0.99267 0.96227 0.97310 1.69964 1.42965 1.25969 1.16667 0.85773 0.79964 0.79428 0.77442 1.19420 1.21380 1.20196 1.21907 0.97079 0.99252 0.97554 1.22194 0.97327 0.78514 1.03767 1.20116 0.75113 0.77865 0.85663 1.93197 1.88227 1.38006 1.96737 1.93191 1.88279 1.80505 1.53252 1.93186 1.31025 1.96452 1.96834 0.87536 0.91692 0.87552 0.91395 0.91535 0.95939 0.90979 0.97525 0.93124 0.93277 0.90313 0.86450 0.89548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.78 71.98 0.63 -1.43 16 2 C -0.16 -3.31 1.85 -11.54 -0.02 -3.33 16 3 H 0.16 2.51 6.47 -2.39 -0.02 2.49 16 4 C 0.51 15.96 6.53 87.66 0.57 16.54 16 5 O -0.58 -22.71 14.62 -3.04 -0.04 -22.75 16 6 N -0.59 -18.69 2.97 -818.07 -2.43 -21.12 16 7 C 0.12 4.64 6.45 86.51 0.56 5.19 16 8 C -0.11 -5.15 5.17 30.82 0.16 -4.99 16 9 C 0.04 1.97 2.06 -11.51 -0.02 1.95 16 10 C -0.53 -27.52 8.56 25.60 0.22 -27.30 16 11 H 0.05 2.73 7.74 -2.91 -0.02 2.70 16 12 C 0.01 0.73 5.30 84.65 0.45 1.18 16 13 N -0.92 -51.07 11.31 21.45 0.24 -50.83 16 14 Si 0.95 42.34 29.54 68.60 2.03 44.36 16 15 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 16 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 17 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 18 C -0.12 -4.02 5.30 30.67 0.16 -3.85 16 19 C 0.10 2.57 5.90 86.36 0.51 3.08 16 20 C 0.47 11.76 2.48 71.98 0.18 11.94 16 21 F -0.18 -5.31 15.52 44.97 0.70 -4.61 16 22 F -0.17 -3.58 16.71 44.97 0.75 -2.82 16 23 F -0.19 -5.84 16.98 44.97 0.76 -5.07 16 24 H 0.11 1.03 7.67 -2.39 -0.02 1.01 16 25 H 0.06 1.12 7.94 -2.39 -0.02 1.10 16 26 H 0.11 1.12 7.35 -2.38 -0.02 1.10 16 27 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.07 2.68 7.03 -2.39 -0.02 2.67 16 29 H 0.02 1.05 8.14 -2.39 -0.02 1.04 16 30 H 0.07 3.77 6.03 -2.39 -0.01 3.76 16 31 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.12 1.86 5.04 -2.39 -0.01 1.85 16 36 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -65.11 299.79 6.50 -58.61 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: 1.10 Total: 5.26 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 3.40 Total: -1.02 kcal Atomic # 7 Polarization: -69.76 SS G_CDS: -2.18 Total: -71.95 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.04 Total: -22.75 kcal Atomic # 9 Polarization: -14.72 SS G_CDS: 2.21 Total: -12.51 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -65.11 6.50 -58.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334425799.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.834 kcal (2) G-P(sol) polarization free energy of solvation -65.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds