Wall clock time and date at job start Tue Mar 31 2020 00:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29031 * 124.91739 * 2 1 4 4 C 1.31783 * 117.12353 * 179.97438 * 3 2 1 5 5 C 1.50693 * 122.74920 * 179.97438 * 4 3 2 6 6 N 1.46903 * 109.47270 * 90.02687 * 5 4 3 7 7 C 1.46896 * 111.00251 * 189.99764 * 6 5 4 8 8 C 1.50699 * 109.46962 * 69.74227 * 7 6 5 9 9 H 1.08004 * 120.00444 * 356.86143 * 8 7 6 10 10 C 1.37875 * 120.00172 * 176.85387 * 8 7 6 11 11 N 1.31516 * 120.00103 * 180.02562 * 10 8 7 12 12 Si 1.86796 * 119.99952 * 0.02562 * 10 8 7 13 13 H 1.48503 * 109.47234 * 89.99736 * 12 10 8 14 14 H 1.48502 * 109.47518 * 209.99702 * 12 10 8 15 15 H 1.48500 * 109.47459 * 329.99937 * 12 10 8 16 16 C 1.46900 * 110.99632 * 66.04839 * 6 5 4 17 17 C 1.53003 * 109.47191 * 192.52867 * 16 6 5 18 18 C 1.47198 * 109.47244 * 179.17342 * 17 16 6 19 19 N 7.19693 * 138.21371 * 94.00635 * 2 1 3 20 20 C 1.33637 * 114.50110 * 0.23725 * 4 3 2 21 21 C 1.50699 * 126.03842 * 179.76629 * 20 4 3 22 22 S 1.70976 * 124.91619 * 179.97438 * 2 1 3 23 23 H 1.09001 * 109.47103 * 89.99707 * 1 2 3 24 24 H 1.08997 * 109.47042 * 210.00041 * 1 2 3 25 25 H 1.09000 * 109.46630 * 330.00017 * 1 2 3 26 26 H 1.09001 * 109.47363 * 330.02625 * 5 4 3 27 27 H 1.08998 * 109.47738 * 210.02848 * 5 4 3 28 28 H 1.09001 * 109.47363 * 189.74031 * 7 6 5 29 29 H 1.08996 * 109.47572 * 309.74305 * 7 6 5 30 30 H 0.97005 * 120.00246 * 180.02562 * 11 10 8 31 31 H 1.09005 * 109.47019 * 312.52801 * 16 6 5 32 32 H 1.09001 * 109.47616 * 72.52459 * 16 6 5 33 33 H 1.09003 * 109.46648 * 299.17077 * 17 16 6 34 34 H 1.08999 * 109.46778 * 59.16760 * 17 16 6 35 35 H 1.08999 * 109.47418 * 89.99867 * 21 20 4 36 36 H 1.09004 * 109.46982 * 210.00234 * 21 20 4 37 37 H 1.09001 * 109.47331 * 329.99720 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 0.0005 5 6 4.5308 2.0245 0.0000 6 7 4.8492 2.3971 1.3849 7 6 5.6100 3.6529 1.4305 8 6 4.7144 4.7976 1.0321 9 1 3.6977 4.6054 0.7224 10 6 5.1928 6.0903 1.0632 11 7 4.4110 7.0893 0.7161 12 14 6.9512 6.4228 1.5985 13 1 7.8451 6.3845 0.4132 14 1 7.0302 7.7623 2.2348 15 1 7.3766 5.3861 2.5729 16 6 5.5745 1.3171 2.0671 17 6 5.6146 1.5999 3.5702 18 6 6.3242 0.5078 4.2562 19 7 6.8733 -0.3351 4.7840 20 6 3.9354 -0.4006 -0.0040 21 6 5.3574 -0.8995 -0.0096 22 16 2.4856 -1.4020 0.0006 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3632 0.8900 0.5138 26 1 4.0906 2.8789 -0.5141 27 1 5.4432 1.7220 -0.5137 28 1 5.9805 3.8167 2.4424 29 1 6.4517 3.5931 0.7406 30 1 4.7477 7.9988 0.7376 31 1 5.0664 0.3693 1.8891 32 1 6.5921 1.2620 1.6805 33 1 6.1356 2.5405 3.7492 34 1 4.5968 1.6695 3.9541 35 1 5.7034 -1.0225 1.0167 36 1 5.4041 -1.8582 -0.5262 37 1 5.9934 -0.1786 -0.5235 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336678767.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:42 Heat of formation + Delta-G solvation = 74.915890 kcal Electronic energy + Delta-G solvation = -19406.415426 eV Core-core repulsion = 16503.946731 eV Total energy + Delta-G solvation = -2902.468696 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.97362 -37.52210 -36.18166 -33.44973 -32.56200 -31.28628 -30.22353 -28.38394 -26.41441 -24.61996 -23.09106 -22.35921 -20.26297 -18.60813 -17.74596 -17.36970 -16.84292 -15.66652 -15.02491 -14.81465 -14.54403 -14.26064 -13.95311 -13.64215 -13.38763 -13.30176 -13.05418 -12.70623 -12.53649 -12.39405 -12.34329 -12.10273 -12.05044 -11.97765 -11.50005 -11.11994 -10.90282 -10.78265 -10.70287 -10.10065 -9.87946 -9.36032 -9.31821 -9.06606 -8.60354 -8.43604 -7.57026 -6.06448 -4.04507 0.84083 1.45361 1.84604 2.82092 2.89499 3.01664 3.25298 3.32324 3.34608 4.06581 4.24185 4.38600 4.86771 4.99287 5.08389 5.12120 5.19947 5.26042 5.34913 5.37546 5.45046 5.45532 5.66365 5.69895 5.84917 5.90915 5.99039 6.03893 6.14538 6.26722 6.53065 6.73013 6.80391 7.49685 7.63641 7.75791 7.84596 8.06999 8.60410 9.06013 9.53947 11.06516 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.014035 B = 0.006051 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.480000 B = 4626.398098 C = 5968.762061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.047 3.953 3 N -0.443 5.443 4 C 0.093 3.907 5 C 0.134 3.866 6 N -0.514 5.514 7 C 0.158 3.842 8 C -0.509 4.509 9 H 0.085 0.915 10 C 0.070 3.930 11 N -0.897 5.897 12 Si 0.871 3.129 13 H -0.278 1.278 14 H -0.286 1.286 15 H -0.267 1.267 16 C 0.046 3.954 17 C -0.030 4.030 18 C 0.219 3.781 19 N -0.456 5.456 20 C -0.229 4.229 21 C -0.078 4.078 22 S 0.079 5.921 23 H 0.083 0.917 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.110 0.890 27 H 0.043 0.957 28 H 0.036 0.964 29 H -0.012 1.012 30 H 0.263 0.737 31 H 0.080 0.920 32 H 0.034 0.966 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.698 -15.884 -1.797 16.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.232 4.232 3 N -0.156 5.156 4 C -0.039 4.039 5 C 0.004 3.996 6 N -0.238 5.238 7 C 0.032 3.968 8 C -0.548 4.548 9 H 0.103 0.897 10 C -0.131 4.131 11 N -0.536 5.536 12 Si 0.698 3.302 13 H -0.204 1.204 14 H -0.212 1.212 15 H -0.191 1.191 16 C -0.084 4.084 17 C -0.071 4.071 18 C -0.099 4.099 19 N -0.133 5.133 20 C -0.350 4.350 21 C -0.137 4.137 22 S 0.333 5.667 23 H 0.101 0.899 24 H 0.095 0.905 25 H 0.109 0.891 26 H 0.128 0.872 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.006 0.994 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.053 0.947 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.812 -17.403 -0.773 17.646 hybrid contribution 2.008 1.271 -0.311 2.396 sum -0.804 -16.133 -1.083 16.189 Atomic orbital electron populations 1.20412 0.85465 1.04068 1.03612 1.26951 1.01538 0.90436 1.04251 1.66133 1.04638 1.30757 1.14111 1.20268 0.90222 0.93477 0.99927 1.20544 0.93600 0.94731 0.90770 1.61854 1.45333 1.02658 1.13924 1.20333 0.92740 0.87128 0.96595 1.21029 1.00382 0.88882 1.44478 0.89685 1.24885 0.97037 0.96173 0.95047 1.69892 1.35885 0.99348 1.48447 0.86948 0.85919 0.77978 0.79338 1.20377 1.21185 1.19140 1.22267 0.97302 0.96968 0.91830 1.19409 1.00930 0.92168 0.94559 1.29413 0.93091 0.94140 0.93248 1.81167 1.10583 1.11455 1.10113 1.25629 0.99700 0.95581 1.14098 1.20404 0.89125 1.01351 1.02773 1.83711 0.98674 1.13599 1.70694 0.89863 0.90518 0.89052 0.87161 0.93931 0.94593 0.99435 0.92650 0.90193 0.94745 0.86831 0.86449 0.90530 0.91439 0.90099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.46 36.01 0.38 -0.36 16 2 C 0.05 0.64 7.39 -13.45 -0.10 0.54 16 3 N -0.44 -7.62 10.53 -8.06 -0.08 -7.71 16 4 C 0.09 1.53 5.75 -84.23 -0.48 1.04 16 5 C 0.13 2.38 5.04 -4.98 -0.03 2.36 16 6 N -0.51 -9.50 4.44 -237.52 -1.05 -10.55 16 7 C 0.16 3.39 3.67 -4.98 -0.02 3.37 16 8 C -0.51 -13.50 9.03 -34.44 -0.31 -13.81 16 9 H 0.09 2.52 7.57 -52.48 -0.40 2.13 16 10 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 11 N -0.90 -26.55 13.96 55.43 0.77 -25.78 16 12 Si 0.87 20.27 27.53 -169.99 -4.68 15.59 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.27 -5.80 6.45 56.52 0.36 -5.44 16 16 C 0.05 0.68 3.91 -3.82 -0.01 0.66 16 17 C -0.03 -0.41 5.69 -29.52 -0.17 -0.57 16 18 C 0.22 3.07 15.43 -20.76 -0.32 2.75 16 19 N -0.46 -7.31 18.54 42.15 0.78 -6.53 16 20 C -0.23 -3.11 5.57 -35.92 -0.20 -3.31 16 21 C -0.08 -0.85 8.90 36.01 0.32 -0.53 16 22 S 0.08 0.93 23.18 -107.50 -2.49 -1.56 16 23 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.11 2.31 6.87 -51.93 -0.36 1.95 16 27 H 0.04 0.68 6.69 -51.93 -0.35 0.33 16 28 H 0.04 0.76 4.98 -51.93 -0.26 0.50 16 29 H -0.01 -0.26 7.67 -51.93 -0.40 -0.65 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.08 1.11 3.90 -51.93 -0.20 0.91 16 32 H 0.03 0.48 8.10 -51.93 -0.42 0.06 16 33 H 0.11 1.54 6.44 -51.93 -0.33 1.20 16 34 H 0.12 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.08 0.82 6.49 -51.93 -0.34 0.48 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.87 6.76 -51.93 -0.35 0.52 16 LS Contribution 319.63 15.07 4.82 4.82 Total: -1.00 -31.19 319.63 -7.67 -38.85 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -4.69 Total: -1.13 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -1.04 Total: -6.02 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: 0.42 Total: -50.56 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.68 Total: 15.59 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.49 Total: -1.56 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.19 -7.67 -38.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336678767.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.771 kcal (2) G-P(sol) polarization free energy of solvation -31.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds