Wall clock time and date at job start Tue Mar 31 2020 01:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 115.56217 * 2 1 4 4 C 1.53004 * 117.49497 * 214.31164 * 2 1 3 5 5 C 1.52993 * 59.99828 * 252.50913 * 4 2 1 6 6 N 1.46902 * 117.50007 * 252.50824 * 5 4 2 7 7 C 1.46891 * 111.00298 * 296.01913 * 6 5 4 8 8 C 1.53001 * 109.47621 * 185.24389 * 7 6 5 9 9 C 1.50697 * 109.47608 * 180.02562 * 8 7 6 10 10 H 1.08004 * 119.99660 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00128 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00008 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99845 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47050 * 59.99885 * 13 11 9 15 15 H 1.48502 * 109.47101 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47276 * 299.99775 * 13 11 9 17 17 C 1.50706 * 117.49804 * 107.51766 * 5 4 2 18 18 C 1.38236 * 119.98655 * 35.23755 * 17 5 4 19 19 C 1.38217 * 120.01616 * 179.72985 * 18 17 5 20 20 C 1.38355 * 119.98225 * 0.54585 * 19 18 17 21 21 Cl 1.73598 * 120.01342 * 179.74743 * 20 19 18 22 22 C 1.38351 * 119.97489 * 359.73078 * 20 19 18 23 23 C 1.38218 * 119.98516 * 359.97438 * 22 20 19 24 24 H 1.08999 * 109.46625 * 271.59553 * 1 2 3 25 25 H 1.08999 * 109.46670 * 31.59148 * 1 2 3 26 26 H 1.08999 * 109.47200 * 151.59387 * 1 2 3 27 27 H 1.09007 * 117.49134 * 145.01892 * 4 2 1 28 28 H 1.08999 * 117.51686 * 359.97438 * 4 2 1 29 29 H 1.00903 * 110.99558 * 59.98052 * 6 5 4 30 30 H 1.09006 * 109.47639 * 305.24799 * 7 6 5 31 31 H 1.09004 * 109.46911 * 65.24397 * 7 6 5 32 32 H 1.08999 * 109.46853 * 300.00474 * 8 7 6 33 33 H 1.09000 * 109.46543 * 59.99795 * 8 7 6 34 34 H 0.97000 * 119.99890 * 179.97438 * 12 11 9 35 35 H 1.08008 * 119.99546 * 0.02562 * 18 17 5 36 36 H 1.07997 * 120.00814 * 180.27083 * 19 18 17 37 37 H 1.07999 * 120.00679 * 180.02562 * 22 20 19 38 38 H 1.08004 * 119.99312 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0004 0.9832 0.0000 4 6 2.2365 -1.1210 -0.7651 5 6 2.2365 -1.1210 0.7649 6 7 3.4968 -0.7898 1.4431 7 6 4.5303 -1.7924 1.1526 8 6 5.7830 -1.4870 1.9763 9 6 6.8435 -2.5152 1.6778 10 1 6.6439 -3.3075 0.9715 11 6 8.0683 -2.4451 2.3071 12 7 8.3112 -1.4806 3.1675 13 14 9.3826 -3.7200 1.9376 14 1 9.7192 -3.6792 0.4918 15 1 10.5985 -3.4236 2.7370 16 1 8.8752 -5.0705 2.2898 17 6 1.3725 -2.1410 1.4608 18 6 1.2117 -3.3997 0.9123 19 6 0.4239 -4.3375 1.5529 20 6 -0.2128 -4.0126 2.7375 21 17 -1.2077 -5.1877 3.5393 22 6 -0.0561 -2.7508 3.2829 23 6 0.7369 -1.8159 2.6445 24 1 -0.3632 0.0286 1.0273 25 1 -0.3632 0.8754 -0.5384 26 1 -0.3633 -0.9039 -0.4889 27 1 3.1716 -0.8751 -1.2684 28 1 1.6115 -1.8589 -1.2681 29 1 3.8101 0.1359 1.1920 30 1 4.1580 -2.7836 1.4114 31 1 4.7772 -1.7627 0.0913 32 1 6.1553 -0.4958 1.7175 33 1 5.5361 -1.5167 3.0376 34 1 9.1727 -1.4315 3.6105 35 1 1.7056 -3.6520 -0.0145 36 1 0.3019 -5.3223 1.1266 37 1 -0.5525 -2.4967 4.2078 38 1 0.8596 -0.8310 3.0704 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337419916.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:31 Heat of formation + Delta-G solvation = 28.928129 kcal Electronic energy + Delta-G solvation = -19048.895165 eV Core-core repulsion = 16110.095833 eV Total energy + Delta-G solvation = -2938.799332 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.05356 -37.92590 -36.33117 -34.33482 -32.40795 -31.08383 -30.54457 -29.10280 -27.55148 -24.35684 -23.16552 -22.78436 -21.24333 -20.06463 -19.55398 -17.05333 -16.44467 -15.72360 -15.34404 -15.27720 -14.68787 -14.43873 -13.91538 -13.54294 -13.45142 -13.22961 -13.07019 -12.81506 -12.37285 -12.18516 -11.63642 -11.50787 -11.49239 -11.34602 -11.18074 -10.94294 -10.84493 -10.64634 -10.46750 -9.93597 -9.83991 -9.33885 -9.16963 -8.99926 -8.51269 -8.35099 -7.89130 -5.99683 -4.02331 1.15041 1.32736 2.09995 3.33449 3.37874 3.40108 3.58522 3.71378 4.36331 4.48097 4.59986 4.77877 4.88538 4.94047 5.01252 5.26808 5.36335 5.38029 5.48170 5.51265 5.67854 5.72669 5.80633 5.88891 5.94771 5.96818 6.22316 6.22939 6.28496 6.31979 6.41294 6.61635 6.81093 6.96772 7.41651 7.68838 7.77617 7.91834 8.07008 8.42705 9.04468 9.61402 11.11708 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.014963 B = 0.004390 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.783155 B = 6376.401939 C = 7610.505905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.143 4.143 3 H 0.106 0.894 4 C -0.205 4.205 5 C 0.093 3.907 6 N -0.649 5.649 7 C 0.071 3.929 8 C 0.027 3.973 9 C -0.522 4.522 10 H 0.053 0.947 11 C 0.059 3.941 12 N -0.893 5.893 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.014 4.014 18 C -0.099 4.099 19 C -0.112 4.112 20 C -0.038 4.038 21 Cl -0.081 7.081 22 C -0.114 4.114 23 C -0.078 4.078 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.341 0.659 30 H 0.059 0.941 31 H 0.018 0.982 32 H 0.013 0.987 33 H 0.025 0.975 34 H 0.261 0.739 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.568 -0.425 -4.668 20.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.162 4.162 3 H 0.124 0.876 4 C -0.244 4.244 5 C 0.000 4.000 6 N -0.278 5.278 7 C -0.057 4.057 8 C -0.010 4.010 9 C -0.560 4.560 10 H 0.071 0.929 11 C -0.142 4.142 12 N -0.532 5.532 13 Si 0.720 3.280 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.202 1.202 17 C -0.015 4.015 18 C -0.118 4.118 19 C -0.131 4.131 20 C -0.064 4.064 21 Cl -0.053 7.053 22 C -0.132 4.132 23 C -0.097 4.097 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.160 0.840 30 H 0.077 0.923 31 H 0.036 0.964 32 H 0.032 0.968 33 H 0.043 0.957 34 H 0.071 0.929 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -19.667 -0.747 -3.859 20.056 hybrid contribution 1.104 -0.594 -1.002 1.605 sum -18.563 -1.341 -4.861 19.236 Atomic orbital electron populations 1.21335 0.92575 1.01668 1.02024 1.22662 0.95624 0.94411 1.03483 0.87566 1.23734 1.02805 1.01703 0.96203 1.20275 0.93361 0.97496 0.88854 1.60323 1.02157 1.06342 1.58992 1.22156 0.91865 0.93975 0.97674 1.19048 0.89575 0.96684 0.95723 1.21114 0.98186 1.11939 1.24804 0.92864 1.24984 0.98446 0.95723 0.95081 1.69960 1.23423 1.32059 1.27779 0.86663 0.81095 0.81994 0.78277 1.20292 1.21242 1.20205 1.18849 0.95063 0.93072 0.94547 1.21009 0.97916 0.92454 1.00395 1.20955 0.97662 1.00165 0.94287 1.20889 0.98622 0.91191 0.95716 1.98353 1.68719 1.58459 1.79722 1.21020 1.00011 0.91751 1.00443 1.20918 0.94985 0.99646 0.94133 0.91948 0.92303 0.92584 0.88532 0.88681 0.84044 0.92293 0.96364 0.96847 0.95683 0.92934 0.85268 0.85163 0.85104 0.84876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 9.22 37.16 0.34 -0.82 16 2 C -0.14 -1.65 6.10 -90.62 -0.55 -2.20 16 3 H 0.11 1.18 8.07 -51.93 -0.42 0.76 16 4 C -0.20 -2.55 8.76 -26.73 -0.23 -2.79 16 5 C 0.09 1.30 1.95 -132.76 -0.26 1.04 16 6 N -0.65 -11.22 6.62 -101.14 -0.67 -11.89 16 7 C 0.07 1.47 5.39 -3.83 -0.02 1.45 16 8 C 0.03 0.71 5.28 -27.88 -0.15 0.56 16 9 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 10 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 11 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -26.96 13.29 55.43 0.74 -26.23 16 13 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 C -0.01 -0.20 4.28 -104.62 -0.45 -0.64 16 18 C -0.10 -1.28 9.21 -39.59 -0.36 -1.65 16 19 C -0.11 -1.36 9.83 -39.55 -0.39 -1.75 16 20 C -0.04 -0.46 6.32 -39.50 -0.25 -0.71 16 21 Cl -0.08 -0.92 28.96 -51.86 -1.50 -2.42 16 22 C -0.11 -1.37 9.83 -39.55 -0.39 -1.76 16 23 C -0.08 -1.02 8.86 -39.59 -0.35 -1.37 16 24 H 0.06 0.61 7.29 -51.93 -0.38 0.23 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.55 7.88 -51.93 -0.41 0.14 16 27 H 0.10 1.27 7.80 -51.92 -0.41 0.86 16 28 H 0.09 1.07 7.26 -51.93 -0.38 0.70 16 29 H 0.34 5.59 8.55 -39.29 -0.34 5.25 16 30 H 0.06 1.27 8.03 -51.93 -0.42 0.86 16 31 H 0.02 0.37 7.56 -51.93 -0.39 -0.02 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.13 1.55 7.27 -52.48 -0.38 1.17 16 36 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 333.68 15.07 5.03 5.03 Total: -1.00 -29.96 333.68 -10.49 -40.46 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -5.59 Total: 2.50 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: -3.47 Total: -24.17 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.07 Total: -38.12 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.50 Total: -2.42 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.96 -10.49 -40.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337419916.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.384 kcal (2) G-P(sol) polarization free energy of solvation -29.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds