Wall clock time and date at job start Tue Mar 31 2020 01:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 115.56217 * 2 1 4 4 C 1.53004 * 117.49497 * 214.31164 * 2 1 3 5 5 C 1.52993 * 59.99828 * 252.50913 * 4 2 1 6 6 N 1.46902 * 117.50007 * 252.50824 * 5 4 2 7 7 C 1.46891 * 111.00298 * 296.01913 * 6 5 4 8 8 C 1.53001 * 109.47621 * 185.24389 * 7 6 5 9 9 C 1.50697 * 109.47608 * 180.02562 * 8 7 6 10 10 H 1.08004 * 119.99660 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00128 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00008 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99845 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47050 * 59.99885 * 13 11 9 15 15 H 1.48502 * 109.47101 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47276 * 299.99775 * 13 11 9 17 17 C 1.50706 * 117.49804 * 107.51766 * 5 4 2 18 18 C 1.38236 * 119.98655 * 35.23755 * 17 5 4 19 19 C 1.38217 * 120.01616 * 179.72985 * 18 17 5 20 20 C 1.38355 * 119.98225 * 0.54585 * 19 18 17 21 21 Cl 1.73598 * 120.01342 * 179.74743 * 20 19 18 22 22 C 1.38351 * 119.97489 * 359.73078 * 20 19 18 23 23 C 1.38218 * 119.98516 * 359.97438 * 22 20 19 24 24 H 1.08999 * 109.46625 * 271.59553 * 1 2 3 25 25 H 1.08999 * 109.46670 * 31.59148 * 1 2 3 26 26 H 1.08999 * 109.47200 * 151.59387 * 1 2 3 27 27 H 1.09007 * 117.49134 * 145.01892 * 4 2 1 28 28 H 1.08999 * 117.51686 * 359.97438 * 4 2 1 29 29 H 1.00903 * 110.99558 * 59.98052 * 6 5 4 30 30 H 1.09006 * 109.47639 * 305.24799 * 7 6 5 31 31 H 1.09004 * 109.46911 * 65.24397 * 7 6 5 32 32 H 1.08999 * 109.46853 * 300.00474 * 8 7 6 33 33 H 1.09000 * 109.46543 * 59.99795 * 8 7 6 34 34 H 0.97000 * 119.99890 * 179.97438 * 12 11 9 35 35 H 1.08008 * 119.99546 * 0.02562 * 18 17 5 36 36 H 1.07997 * 120.00814 * 180.27083 * 19 18 17 37 37 H 1.07999 * 120.00679 * 180.02562 * 22 20 19 38 38 H 1.08004 * 119.99312 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0004 0.9832 0.0000 4 6 2.2365 -1.1210 -0.7651 5 6 2.2365 -1.1210 0.7649 6 7 3.4968 -0.7898 1.4431 7 6 4.5303 -1.7924 1.1526 8 6 5.7830 -1.4870 1.9763 9 6 6.8435 -2.5152 1.6778 10 1 6.6439 -3.3075 0.9715 11 6 8.0683 -2.4451 2.3071 12 7 8.3112 -1.4806 3.1675 13 14 9.3826 -3.7200 1.9376 14 1 9.7192 -3.6792 0.4918 15 1 10.5985 -3.4236 2.7370 16 1 8.8752 -5.0705 2.2898 17 6 1.3725 -2.1410 1.4608 18 6 1.2117 -3.3997 0.9123 19 6 0.4239 -4.3375 1.5529 20 6 -0.2128 -4.0126 2.7375 21 17 -1.2077 -5.1877 3.5393 22 6 -0.0561 -2.7508 3.2829 23 6 0.7369 -1.8159 2.6445 24 1 -0.3632 0.0286 1.0273 25 1 -0.3632 0.8754 -0.5384 26 1 -0.3633 -0.9039 -0.4889 27 1 3.1716 -0.8751 -1.2684 28 1 1.6115 -1.8589 -1.2681 29 1 3.8101 0.1359 1.1920 30 1 4.1580 -2.7836 1.4114 31 1 4.7772 -1.7627 0.0913 32 1 6.1553 -0.4958 1.7175 33 1 5.5361 -1.5167 3.0376 34 1 9.1727 -1.4315 3.6105 35 1 1.7056 -3.6520 -0.0145 36 1 0.3019 -5.3223 1.1266 37 1 -0.5525 -2.4967 4.2078 38 1 0.8596 -0.8310 3.0704 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337419916.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:30 Heat of formation + Delta-G solvation = 12.916964 kcal Electronic energy + Delta-G solvation = -19049.589461 eV Core-core repulsion = 16110.095833 eV Total energy + Delta-G solvation = -2939.493628 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.07007 -38.95612 -37.27590 -36.08177 -34.29475 -32.03415 -31.55252 -30.74917 -28.67280 -26.19958 -24.28574 -23.80413 -22.70297 -21.43935 -20.59649 -18.57184 -17.94825 -17.05800 -16.51558 -16.44724 -16.22768 -15.82198 -15.01469 -14.83858 -14.55473 -14.40246 -14.38114 -14.00467 -13.74163 -13.28773 -13.18636 -12.87245 -12.67546 -12.52747 -12.44776 -12.41325 -12.24864 -12.08719 -11.76801 -11.50105 -11.36243 -11.23774 -10.69339 -10.55592 -9.95681 -9.50778 -9.26338 -8.20187 -6.31612 0.16915 0.36789 1.16408 1.39825 1.42918 1.50787 2.39559 2.60534 2.67431 3.13334 3.28559 3.59201 3.80744 3.91539 3.97483 4.00851 4.39269 4.41647 4.49847 4.51763 4.57239 4.65448 4.75774 4.86548 4.93353 4.97556 5.03246 5.07135 5.16613 5.27156 5.29746 5.40486 5.45106 5.61178 5.67585 5.79122 5.85071 6.13463 6.26548 6.51333 6.85175 7.37578 8.91704 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.014963 B = 0.004390 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.783155 B = 6376.401939 C = 7610.505905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.125 4.125 3 H 0.112 0.888 4 C -0.200 4.200 5 C 0.072 3.928 6 N -0.656 5.656 7 C 0.095 3.905 8 C 0.034 3.966 9 C -0.544 4.544 10 H 0.059 0.941 11 C 0.003 3.997 12 N -0.931 5.931 13 Si 0.964 3.036 14 H -0.265 1.265 15 H -0.282 1.282 16 H -0.268 1.268 17 C -0.027 4.027 18 C -0.108 4.108 19 C -0.114 4.114 20 C -0.046 4.046 21 Cl -0.073 7.073 22 C -0.115 4.115 23 C -0.088 4.088 24 H 0.062 0.938 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.088 0.912 28 H 0.109 0.891 29 H 0.344 0.656 30 H 0.050 0.950 31 H 0.022 0.978 32 H -0.008 1.008 33 H -0.009 1.009 34 H 0.264 0.736 35 H 0.136 0.864 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.437 -1.243 -5.651 21.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.143 4.143 3 H 0.130 0.870 4 C -0.239 4.239 5 C -0.020 4.020 6 N -0.286 5.286 7 C -0.033 4.033 8 C -0.003 4.003 9 C -0.583 4.583 10 H 0.077 0.923 11 C -0.195 4.195 12 N -0.571 5.571 13 Si 0.788 3.212 14 H -0.190 1.190 15 H -0.207 1.207 16 H -0.193 1.193 17 C -0.028 4.028 18 C -0.127 4.127 19 C -0.132 4.132 20 C -0.072 4.072 21 Cl -0.044 7.044 22 C -0.133 4.133 23 C -0.106 4.106 24 H 0.081 0.919 25 H 0.095 0.905 26 H 0.075 0.925 27 H 0.107 0.893 28 H 0.127 0.873 29 H 0.163 0.837 30 H 0.068 0.932 31 H 0.040 0.960 32 H 0.011 0.989 33 H 0.009 0.991 34 H 0.073 0.927 35 H 0.154 0.846 36 H 0.165 0.835 37 H 0.165 0.835 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -20.561 -1.563 -4.855 21.184 hybrid contribution 1.311 -0.312 -0.664 1.503 sum -19.250 -1.875 -5.519 20.113 Atomic orbital electron populations 1.21342 0.90960 1.02580 1.02368 1.22768 0.96741 0.93916 1.00908 0.87035 1.23739 1.02910 1.02519 0.94776 1.20317 0.92256 0.99712 0.89707 1.60139 1.02525 1.05600 1.60309 1.21654 0.90685 0.94403 0.96557 1.18890 0.91732 0.95236 0.94463 1.21554 0.99149 1.12556 1.25002 0.92307 1.25937 1.00992 0.97879 0.94695 1.70097 1.24190 1.33989 1.28807 0.85522 0.77868 0.79164 0.78625 1.19014 1.20745 1.19315 1.18934 0.95445 0.93381 0.95065 1.21149 0.98265 0.92383 1.00875 1.21171 0.97129 1.00754 0.94186 1.21034 0.98772 0.91506 0.95912 1.98355 1.68422 1.58083 1.79548 1.21221 0.99667 0.91562 1.00893 1.21026 0.95332 1.00078 0.94195 0.91928 0.90546 0.92451 0.89324 0.87310 0.83688 0.93185 0.95996 0.98930 0.99070 0.92748 0.84638 0.83520 0.83498 0.84671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.99 9.22 71.98 0.66 -1.33 16 2 C -0.12 -2.66 6.10 -10.79 -0.07 -2.73 16 3 H 0.11 2.28 8.07 -2.39 -0.02 2.26 16 4 C -0.20 -4.70 8.76 30.59 0.27 -4.43 16 5 C 0.07 1.96 1.95 2.78 0.01 1.96 16 6 N -0.66 -22.85 6.62 -473.91 -3.14 -25.99 16 7 C 0.10 4.02 5.39 86.31 0.47 4.48 16 8 C 0.03 1.84 5.28 29.85 0.16 2.00 16 9 C -0.54 -31.32 9.11 25.60 0.23 -31.08 16 10 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 11 C 0.00 0.18 5.46 84.65 0.46 0.64 16 12 N -0.93 -57.20 13.29 21.45 0.28 -56.91 16 13 Si 0.96 44.48 29.54 68.60 2.03 46.51 16 14 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 15 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 16 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 17 C -0.03 -0.73 4.28 -19.86 -0.08 -0.81 16 18 C -0.11 -2.68 9.21 22.26 0.21 -2.48 16 19 C -0.11 -2.61 9.83 22.29 0.22 -2.39 16 20 C -0.05 -1.06 6.32 22.32 0.14 -0.92 16 21 Cl -0.07 -1.54 28.96 -2.72 -0.08 -1.62 16 22 C -0.11 -2.65 9.83 22.29 0.22 -2.43 16 23 C -0.09 -2.21 8.86 22.27 0.20 -2.01 16 24 H 0.06 1.10 7.29 -2.39 -0.02 1.09 16 25 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.06 0.99 7.88 -2.39 -0.02 0.97 16 27 H 0.09 2.23 7.80 -2.38 -0.02 2.22 16 28 H 0.11 2.24 7.26 -2.39 -0.02 2.23 16 29 H 0.34 11.40 8.55 -89.69 -0.77 10.63 16 30 H 0.05 2.18 8.03 -2.38 -0.02 2.16 16 31 H 0.02 0.90 7.56 -2.39 -0.02 0.88 16 32 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 33 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 34 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 35 H 0.14 3.09 7.27 -2.91 -0.02 3.07 16 36 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16 37 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 38 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -64.25 333.68 2.46 -61.78 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.28 Total: 17.75 kcal Atomic # 6 Polarization: -44.61 SS G_CDS: 3.09 Total: -41.52 kcal Atomic # 7 Polarization: -80.05 SS G_CDS: -2.85 Total: -82.90 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.08 Total: -1.62 kcal Total: -64.25 2.46 -61.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337419916.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.701 kcal (2) G-P(sol) polarization free energy of solvation -64.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds