Wall clock time and date at job start Tue Mar 31 2020 01:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 115.56755 * 2 1 4 4 C 1.53007 * 117.49713 * 145.68932 * 2 1 3 5 5 C 1.52994 * 59.99845 * 107.48740 * 4 2 1 6 6 N 1.46907 * 117.49802 * 107.49191 * 5 4 2 7 7 C 1.46897 * 110.99985 * 61.69374 * 6 5 4 8 8 C 1.52995 * 109.47314 * 184.63739 * 7 6 5 9 9 C 1.50704 * 109.47338 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00024 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00012 * 180.02562 * 9 8 7 12 12 N 1.31521 * 119.99890 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00042 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47200 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47518 * 119.99849 * 13 11 9 16 16 H 1.48497 * 109.47094 * 239.99816 * 13 11 9 17 17 C 1.50704 * 117.49938 * 252.50694 * 5 4 2 18 18 C 1.38234 * 119.98759 * 312.59004 * 17 5 4 19 19 C 1.38219 * 120.01122 * 179.72708 * 18 17 5 20 20 C 1.38347 * 119.98697 * 0.54368 * 19 18 17 21 21 Cl 1.73605 * 120.01448 * 179.75330 * 20 19 18 22 22 C 1.38357 * 119.97311 * 359.72660 * 20 19 18 23 23 C 1.38206 * 119.98705 * 0.02562 * 22 20 19 24 24 H 1.09000 * 109.47681 * 269.52262 * 1 2 3 25 25 H 1.09008 * 109.46667 * 29.51532 * 1 2 3 26 26 H 1.08998 * 109.47396 * 149.51779 * 1 2 3 27 27 H 1.08997 * 117.49881 * 214.98296 * 4 2 1 28 28 H 1.09004 * 117.49555 * 359.97438 * 4 2 1 29 29 H 1.00895 * 110.99957 * 297.73950 * 6 5 4 30 30 H 1.09005 * 109.47246 * 304.63550 * 7 6 5 31 31 H 1.08999 * 109.47286 * 64.63544 * 7 6 5 32 32 H 1.09000 * 109.47191 * 299.99802 * 8 7 6 33 33 H 1.08999 * 109.47103 * 59.99693 * 8 7 6 34 34 H 0.96995 * 119.99719 * 180.02562 * 12 11 9 35 35 H 1.08000 * 119.99557 * 359.97438 * 18 17 5 36 36 H 1.08007 * 120.00428 * 180.27219 * 19 18 17 37 37 H 1.08001 * 120.00350 * 180.02562 * 22 20 19 38 38 H 1.07995 * 119.99828 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9832 0.0000 4 6 2.2364 -1.1211 0.7650 5 6 2.2363 -1.1210 -0.7649 6 7 3.4966 -0.7898 -1.4432 7 6 4.5456 -1.7626 -1.1095 8 6 5.8686 -1.3221 -1.7390 9 6 6.9449 -2.3198 -1.3961 10 1 6.7087 -3.1820 -0.7901 11 6 8.2310 -2.1317 -1.8560 12 7 8.5185 -1.0820 -2.5943 13 14 9.5648 -3.3686 -1.4316 14 1 8.9876 -4.4519 -0.5957 15 1 10.1179 -3.9488 -2.6816 16 1 10.6495 -2.6884 -0.6794 17 6 1.3719 -2.1407 -1.4607 18 6 1.4060 -3.4635 -1.0611 19 6 0.6092 -4.3981 -1.6952 20 6 -0.2142 -4.0114 -2.7375 21 17 -1.2106 -5.1859 -3.5387 22 6 -0.2438 -2.6883 -3.1408 23 6 0.5496 -1.7538 -2.5026 24 1 -0.3634 -0.0086 1.0276 25 1 -0.3633 0.8944 -0.5063 26 1 -0.3634 -0.8856 -0.5213 27 1 3.1714 -0.8752 1.2684 28 1 1.6111 -1.8583 1.2687 29 1 3.7907 0.1495 -1.2213 30 1 4.6589 -1.8176 -0.0268 31 1 4.2680 -2.7432 -1.4960 32 1 5.7553 -1.2671 -2.8217 33 1 6.1462 -0.3415 -1.3525 34 1 9.4232 -0.9499 -2.9181 35 1 2.0524 -3.7662 -0.2505 36 1 0.6327 -5.4309 -1.3799 37 1 -0.8868 -2.3858 -3.9541 38 1 0.5270 -0.7210 -2.8175 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337419927.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:33 Heat of formation + Delta-G solvation = 29.644692 kcal Electronic energy + Delta-G solvation = -19029.091241 eV Core-core repulsion = 16090.322981 eV Total energy + Delta-G solvation = -2938.768260 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.10875 -37.93409 -36.35587 -34.34964 -32.41541 -31.12244 -30.54508 -29.12135 -27.55671 -24.36843 -23.15636 -22.79782 -21.27685 -20.07949 -19.55600 -17.04530 -16.47338 -15.69627 -15.42086 -15.29844 -14.67212 -14.42406 -13.89430 -13.56890 -13.49361 -13.22986 -13.10953 -12.85163 -12.46860 -12.19680 -11.64733 -11.54681 -11.48701 -11.28030 -11.13407 -10.98014 -10.86765 -10.61205 -10.48891 -9.92465 -9.81883 -9.33220 -9.16659 -9.01468 -8.57139 -8.37642 -7.89670 -6.01713 -4.04253 1.12121 1.29611 2.07313 3.30170 3.37685 3.41471 3.58801 3.67253 4.36356 4.47012 4.61677 4.77841 4.86055 4.93288 5.01698 5.29034 5.34602 5.36708 5.45731 5.50204 5.66473 5.71996 5.79176 5.91348 5.93810 5.96142 6.19863 6.25226 6.28366 6.33499 6.39802 6.58719 6.78163 6.94034 7.40541 7.67407 7.78516 7.88725 8.04078 8.40692 9.02824 9.59785 11.09788 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016034 B = 0.004197 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.836619 B = 6669.894243 C = 7832.887046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.145 4.145 3 H 0.106 0.894 4 C -0.203 4.203 5 C 0.092 3.908 6 N -0.650 5.650 7 C 0.069 3.931 8 C 0.024 3.976 9 C -0.520 4.520 10 H 0.055 0.945 11 C 0.058 3.942 12 N -0.893 5.893 13 Si 0.892 3.108 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.284 1.284 17 C -0.014 4.014 18 C -0.095 4.095 19 C -0.112 4.112 20 C -0.037 4.037 21 Cl -0.081 7.081 22 C -0.115 4.115 23 C -0.081 4.081 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.342 0.658 30 H 0.020 0.980 31 H 0.059 0.941 32 H 0.025 0.975 33 H 0.013 0.987 34 H 0.260 0.740 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.055 -1.463 3.370 20.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.164 4.164 3 H 0.124 0.876 4 C -0.242 4.242 5 C 0.000 4.000 6 N -0.279 5.279 7 C -0.058 4.058 8 C -0.014 4.014 9 C -0.559 4.559 10 H 0.073 0.927 11 C -0.143 4.143 12 N -0.532 5.532 13 Si 0.720 3.280 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.210 1.210 17 C -0.015 4.015 18 C -0.113 4.113 19 C -0.130 4.130 20 C -0.064 4.064 21 Cl -0.052 7.052 22 C -0.134 4.134 23 C -0.100 4.100 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.116 0.884 28 H 0.113 0.887 29 H 0.161 0.839 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.043 0.957 33 H 0.031 0.969 34 H 0.070 0.930 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -20.139 -1.796 2.600 20.385 hybrid contribution 1.117 -0.480 1.011 1.581 sum -19.022 -2.276 3.611 19.495 Atomic orbital electron populations 1.21448 0.92667 1.02477 1.01757 1.22666 0.95623 0.94458 1.03628 0.87587 1.23659 1.02746 1.01829 0.95977 1.20325 0.93398 0.97332 0.88980 1.60355 1.01846 1.06733 1.58987 1.22182 0.91616 0.94708 0.97317 1.19101 0.89011 0.96438 0.96835 1.21175 0.93756 1.08560 1.32360 0.92694 1.24996 0.98692 0.95528 0.95107 1.69982 1.20014 1.27835 1.35403 0.86538 0.81863 0.81417 0.78202 1.19747 1.20943 1.21029 1.18858 0.94688 0.92769 0.95218 1.21025 0.98042 0.92133 1.00130 1.20985 0.96216 1.00357 0.95490 1.20894 0.97621 0.90477 0.97390 1.98355 1.68821 1.58606 1.79421 1.21000 1.00618 0.91072 1.00691 1.20926 0.94840 0.99796 0.94442 0.92379 0.92186 0.91721 0.88388 0.88734 0.83910 0.96174 0.92254 0.95651 0.96855 0.93031 0.85156 0.85090 0.85096 0.84967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 9.78 37.16 0.36 -0.87 16 2 C -0.14 -1.69 6.09 -90.62 -0.55 -2.24 16 3 H 0.11 1.20 8.06 -51.93 -0.42 0.78 16 4 C -0.20 -2.58 8.84 -26.73 -0.24 -2.81 16 5 C 0.09 1.30 1.91 -132.75 -0.25 1.04 16 6 N -0.65 -11.30 6.69 -101.14 -0.68 -11.97 16 7 C 0.07 1.43 5.55 -3.83 -0.02 1.41 16 8 C 0.02 0.61 5.19 -27.88 -0.14 0.46 16 9 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 10 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -26.85 13.29 55.43 0.74 -26.12 16 13 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 14 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 17 C -0.01 -0.19 4.16 -104.62 -0.44 -0.63 16 18 C -0.09 -1.24 9.36 -39.59 -0.37 -1.61 16 19 C -0.11 -1.35 9.83 -39.55 -0.39 -1.74 16 20 C -0.04 -0.45 6.32 -39.50 -0.25 -0.70 16 21 Cl -0.08 -0.89 28.96 -51.86 -1.50 -2.39 16 22 C -0.12 -1.34 9.83 -39.55 -0.39 -1.72 16 23 C -0.08 -1.01 7.97 -39.59 -0.32 -1.33 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 26 H 0.06 0.67 5.29 -51.93 -0.27 0.39 16 27 H 0.10 1.33 7.61 -51.93 -0.40 0.93 16 28 H 0.09 1.10 8.04 -51.93 -0.42 0.68 16 29 H 0.34 5.72 8.42 -39.29 -0.33 5.39 16 30 H 0.02 0.41 7.08 -51.93 -0.37 0.04 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.13 1.64 7.97 -52.49 -0.42 1.23 16 36 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 37 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 332.59 15.07 5.01 5.01 Total: -1.00 -29.81 332.59 -10.40 -40.21 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.55 Total: 2.80 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: -3.40 Total: -24.17 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.06 Total: -38.09 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.39 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.81 -10.40 -40.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337419927.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.855 kcal (2) G-P(sol) polarization free energy of solvation -29.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds