Wall clock time and date at job start Tue Mar 31 2020 01:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 115.56755 * 2 1 4 4 C 1.53007 * 117.49713 * 145.68932 * 2 1 3 5 5 C 1.52994 * 59.99845 * 107.48740 * 4 2 1 6 6 N 1.46907 * 117.49802 * 107.49191 * 5 4 2 7 7 C 1.46897 * 110.99985 * 61.69374 * 6 5 4 8 8 C 1.52995 * 109.47314 * 184.63739 * 7 6 5 9 9 C 1.50704 * 109.47338 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00024 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00012 * 180.02562 * 9 8 7 12 12 N 1.31521 * 119.99890 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00042 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47200 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47518 * 119.99849 * 13 11 9 16 16 H 1.48497 * 109.47094 * 239.99816 * 13 11 9 17 17 C 1.50704 * 117.49938 * 252.50694 * 5 4 2 18 18 C 1.38234 * 119.98759 * 312.59004 * 17 5 4 19 19 C 1.38219 * 120.01122 * 179.72708 * 18 17 5 20 20 C 1.38347 * 119.98697 * 0.54368 * 19 18 17 21 21 Cl 1.73605 * 120.01448 * 179.75330 * 20 19 18 22 22 C 1.38357 * 119.97311 * 359.72660 * 20 19 18 23 23 C 1.38206 * 119.98705 * 0.02562 * 22 20 19 24 24 H 1.09000 * 109.47681 * 269.52262 * 1 2 3 25 25 H 1.09008 * 109.46667 * 29.51532 * 1 2 3 26 26 H 1.08998 * 109.47396 * 149.51779 * 1 2 3 27 27 H 1.08997 * 117.49881 * 214.98296 * 4 2 1 28 28 H 1.09004 * 117.49555 * 359.97438 * 4 2 1 29 29 H 1.00895 * 110.99957 * 297.73950 * 6 5 4 30 30 H 1.09005 * 109.47246 * 304.63550 * 7 6 5 31 31 H 1.08999 * 109.47286 * 64.63544 * 7 6 5 32 32 H 1.09000 * 109.47191 * 299.99802 * 8 7 6 33 33 H 1.08999 * 109.47103 * 59.99693 * 8 7 6 34 34 H 0.96995 * 119.99719 * 180.02562 * 12 11 9 35 35 H 1.08000 * 119.99557 * 359.97438 * 18 17 5 36 36 H 1.08007 * 120.00428 * 180.27219 * 19 18 17 37 37 H 1.08001 * 120.00350 * 180.02562 * 22 20 19 38 38 H 1.07995 * 119.99828 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9832 0.0000 4 6 2.2364 -1.1211 0.7650 5 6 2.2363 -1.1210 -0.7649 6 7 3.4966 -0.7898 -1.4432 7 6 4.5456 -1.7626 -1.1095 8 6 5.8686 -1.3221 -1.7390 9 6 6.9449 -2.3198 -1.3961 10 1 6.7087 -3.1820 -0.7901 11 6 8.2310 -2.1317 -1.8560 12 7 8.5185 -1.0820 -2.5943 13 14 9.5648 -3.3686 -1.4316 14 1 8.9876 -4.4519 -0.5957 15 1 10.1179 -3.9488 -2.6816 16 1 10.6495 -2.6884 -0.6794 17 6 1.3719 -2.1407 -1.4607 18 6 1.4060 -3.4635 -1.0611 19 6 0.6092 -4.3981 -1.6952 20 6 -0.2142 -4.0114 -2.7375 21 17 -1.2106 -5.1859 -3.5387 22 6 -0.2438 -2.6883 -3.1408 23 6 0.5496 -1.7538 -2.5026 24 1 -0.3634 -0.0086 1.0276 25 1 -0.3633 0.8944 -0.5063 26 1 -0.3634 -0.8856 -0.5213 27 1 3.1714 -0.8752 1.2684 28 1 1.6111 -1.8583 1.2687 29 1 3.7907 0.1495 -1.2213 30 1 4.6589 -1.8176 -0.0268 31 1 4.2680 -2.7432 -1.4960 32 1 5.7553 -1.2671 -2.8217 33 1 6.1462 -0.3415 -1.3525 34 1 9.4232 -0.9499 -2.9181 35 1 2.0524 -3.7662 -0.2505 36 1 0.6327 -5.4309 -1.3799 37 1 -0.8868 -2.3858 -3.9541 38 1 0.5270 -0.7210 -2.8175 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337419927.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:33 Heat of formation + Delta-G solvation = 13.719472 kcal Electronic energy + Delta-G solvation = -19029.781810 eV Core-core repulsion = 16090.322981 eV Total energy + Delta-G solvation = -2939.458829 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.11963 -38.96216 -37.28298 -36.09172 -34.29858 -32.06085 -31.53023 -30.76023 -28.69011 -26.21108 -24.26645 -23.79621 -22.75364 -21.44542 -20.59350 -18.58360 -17.92409 -17.05909 -16.56250 -16.40105 -16.26671 -15.82426 -15.00141 -14.89002 -14.55602 -14.42864 -14.41381 -14.01211 -13.72043 -13.36226 -13.16185 -12.93090 -12.66327 -12.50448 -12.46021 -12.41452 -12.26589 -12.02810 -11.77044 -11.49133 -11.34243 -11.21847 -10.65856 -10.57480 -9.95253 -9.55962 -9.27196 -8.21422 -6.32615 0.15603 0.35735 1.15939 1.39488 1.40160 1.53169 2.38925 2.62049 2.63344 3.12373 3.27767 3.59872 3.82358 3.88019 3.97483 4.00275 4.41204 4.41511 4.49614 4.51179 4.59380 4.62745 4.74863 4.84217 4.93167 4.97952 5.01736 5.05194 5.17347 5.26453 5.30315 5.41622 5.44746 5.59905 5.66485 5.77920 5.83792 6.12038 6.25298 6.49583 6.84239 7.36767 8.90886 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016034 B = 0.004197 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.836619 B = 6669.894243 C = 7832.887046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.126 4.126 3 H 0.110 0.890 4 C -0.201 4.201 5 C 0.073 3.927 6 N -0.657 5.657 7 C 0.094 3.906 8 C 0.031 3.969 9 C -0.542 4.542 10 H 0.059 0.941 11 C 0.002 3.998 12 N -0.931 5.931 13 Si 0.965 3.035 14 H -0.262 1.262 15 H -0.279 1.279 16 H -0.277 1.277 17 C -0.028 4.028 18 C -0.107 4.107 19 C -0.115 4.115 20 C -0.044 4.044 21 Cl -0.072 7.072 22 C -0.114 4.114 23 C -0.086 4.086 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.087 0.913 28 H 0.106 0.894 29 H 0.343 0.657 30 H 0.023 0.977 31 H 0.050 0.950 32 H -0.008 1.008 33 H -0.007 1.007 34 H 0.264 0.736 35 H 0.130 0.870 36 H 0.145 0.855 37 H 0.151 0.849 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.124 -2.164 3.992 21.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.145 4.145 3 H 0.128 0.872 4 C -0.240 4.240 5 C -0.018 4.018 6 N -0.286 5.286 7 C -0.035 4.035 8 C -0.006 4.006 9 C -0.580 4.580 10 H 0.077 0.923 11 C -0.196 4.196 12 N -0.571 5.571 13 Si 0.789 3.211 14 H -0.186 1.186 15 H -0.204 1.204 16 H -0.202 1.202 17 C -0.029 4.029 18 C -0.126 4.126 19 C -0.133 4.133 20 C -0.071 4.071 21 Cl -0.043 7.043 22 C -0.132 4.132 23 C -0.105 4.105 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.105 0.895 28 H 0.125 0.875 29 H 0.163 0.837 30 H 0.041 0.959 31 H 0.069 0.931 32 H 0.011 0.989 33 H 0.012 0.988 34 H 0.073 0.927 35 H 0.148 0.852 36 H 0.163 0.837 37 H 0.168 0.832 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -21.233 -2.497 3.231 21.622 hybrid contribution 1.388 -0.238 0.787 1.613 sum -19.845 -2.735 4.018 20.432 Atomic orbital electron populations 1.21457 0.90868 1.02971 1.02684 1.22775 0.96870 0.93863 1.00968 0.87159 1.23646 1.02770 1.02804 0.94789 1.20375 0.92305 0.99489 0.89665 1.60202 1.02238 1.06015 1.60145 1.21694 0.90229 0.94849 0.96694 1.18942 0.91565 0.95244 0.94898 1.21597 0.94795 1.09125 1.32490 0.92274 1.25943 1.01324 0.97513 0.94791 1.70110 1.20821 1.29762 1.36427 0.85404 0.78557 0.78947 0.78178 1.18584 1.20420 1.20219 1.18920 0.95195 0.92816 0.95954 1.21115 0.98541 0.92332 1.00578 1.21159 0.95873 1.00919 0.95382 1.21036 0.97694 0.90943 0.97419 1.98358 1.68492 1.58276 1.79199 1.21232 1.00390 0.90779 1.00831 1.21062 0.94769 1.00446 0.94184 0.91179 0.90823 0.92108 0.89463 0.87539 0.83736 0.95862 0.93146 0.98930 0.98838 0.92741 0.85248 0.83710 0.83159 0.84173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.11 9.78 71.98 0.70 -1.41 16 2 C -0.13 -2.74 6.09 -10.79 -0.07 -2.81 16 3 H 0.11 2.32 8.06 -2.39 -0.02 2.30 16 4 C -0.20 -4.90 8.84 30.59 0.27 -4.63 16 5 C 0.07 2.02 1.91 2.78 0.01 2.02 16 6 N -0.66 -23.03 6.69 -473.90 -3.17 -26.20 16 7 C 0.09 3.95 5.55 86.30 0.48 4.43 16 8 C 0.03 1.66 5.19 29.85 0.15 1.81 16 9 C -0.54 -31.05 9.11 25.60 0.23 -30.82 16 10 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 11 C 0.00 0.13 5.46 84.65 0.46 0.60 16 12 N -0.93 -56.96 13.29 21.45 0.28 -56.67 16 13 Si 0.96 44.41 29.54 68.60 2.03 46.44 16 14 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 15 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 16 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 17 C -0.03 -0.73 4.16 -19.86 -0.08 -0.82 16 18 C -0.11 -2.73 9.36 22.26 0.21 -2.52 16 19 C -0.11 -2.65 9.83 22.29 0.22 -2.43 16 20 C -0.04 -1.00 6.32 22.32 0.14 -0.86 16 21 Cl -0.07 -1.47 28.96 -2.72 -0.08 -1.55 16 22 C -0.11 -2.45 9.83 22.29 0.22 -2.23 16 23 C -0.09 -2.03 7.97 22.26 0.18 -1.85 16 24 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 26 H 0.06 1.12 5.29 -2.39 -0.01 1.11 16 27 H 0.09 2.32 7.61 -2.39 -0.02 2.30 16 28 H 0.11 2.33 8.04 -2.39 -0.02 2.31 16 29 H 0.34 11.66 8.42 -89.70 -0.76 10.91 16 30 H 0.02 0.96 7.08 -2.38 -0.02 0.94 16 31 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 32 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 33 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 34 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 35 H 0.13 3.22 7.97 -2.91 -0.02 3.20 16 36 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 37 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 38 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -63.88 332.59 2.48 -61.40 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.30 Total: 18.09 kcal Atomic # 6 Polarization: -44.63 SS G_CDS: 3.13 Total: -41.51 kcal Atomic # 7 Polarization: -79.99 SS G_CDS: -2.89 Total: -82.87 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -0.08 Total: -1.55 kcal Total: -63.88 2.48 -61.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337419927.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.117 kcal (2) G-P(sol) polarization free energy of solvation -63.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds