Wall clock time and date at job start Tue Mar 31 2020 01:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46902 * 109.47462 * 2 1 4 4 C 1.46899 * 110.99752 * 294.71978 * 3 2 1 5 5 C 1.50698 * 109.47187 * 293.95138 * 4 3 2 6 6 H 1.07999 * 120.00023 * 0.02562 * 5 4 3 7 7 C 1.37868 * 119.99957 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00415 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00235 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47146 * 89.99798 * 9 7 5 11 11 H 1.48501 * 109.47657 * 210.00204 * 9 7 5 12 12 H 1.48509 * 109.46675 * 329.99978 * 9 7 5 13 13 C 1.46907 * 110.99484 * 58.67130 * 3 2 1 14 14 H 1.08995 * 110.27280 * 300.74752 * 13 3 2 15 15 C 1.54335 * 110.30326 * 62.82716 * 13 3 2 16 16 C 1.54352 * 102.39661 * 92.56626 * 15 13 3 17 17 C 1.51378 * 105.16566 * 26.35211 * 16 15 13 18 18 C 1.38506 * 130.37166 * 162.78844 * 17 16 15 19 19 C 1.38083 * 120.23225 * 180.02562 * 18 17 16 20 20 C 1.38370 * 119.92293 * 359.97438 * 19 18 17 21 21 Cl 1.73596 * 120.04973 * 180.02562 * 20 19 18 22 22 C 1.38221 * 119.90295 * 0.02562 * 20 19 18 23 23 C 1.38222 * 109.75715 * 342.80809 * 17 16 15 24 24 H 1.08998 * 109.46771 * 60.94229 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.94695 * 1 2 3 26 26 H 1.08992 * 109.47165 * 180.94744 * 1 2 3 27 27 H 1.09002 * 109.46941 * 119.99851 * 2 1 3 28 28 H 1.08996 * 109.47352 * 239.99877 * 2 1 3 29 29 H 1.08999 * 109.46802 * 53.95447 * 4 3 2 30 30 H 1.08996 * 109.46932 * 173.94936 * 4 3 2 31 31 H 0.96994 * 120.00448 * 179.97438 * 8 7 5 32 32 H 1.08996 * 110.82369 * 210.78937 * 15 13 3 33 33 H 1.09006 * 110.82569 * 334.14119 * 15 13 3 34 34 H 1.09000 * 110.30086 * 145.27417 * 16 15 13 35 35 H 1.08990 * 110.30139 * 267.42952 * 16 15 13 36 36 H 1.08007 * 119.88788 * 359.97438 * 18 17 16 37 37 H 1.08000 * 120.03709 * 180.02562 * 19 18 17 38 38 H 1.08000 * 119.89787 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.6546 2.0724 -1.2458 5 6 2.3806 1.4354 -2.4025 6 1 3.0465 0.6029 -2.2296 7 6 2.1949 1.9155 -3.6815 8 7 1.3845 2.9297 -3.8921 9 14 3.0944 1.1255 -5.1155 10 1 2.2663 0.0268 -5.6744 11 1 3.3403 2.1444 -6.1675 12 1 4.3917 0.5772 -4.6444 13 6 1.5229 2.1190 1.1716 14 1 0.4330 2.1302 1.1758 15 6 2.0570 1.4790 2.4705 16 6 3.3449 2.2882 2.7333 17 6 3.1117 3.6296 2.0717 18 6 3.7640 4.8395 2.2422 19 6 3.3722 5.9486 1.5190 20 6 2.3246 5.8517 0.6202 21 17 1.8298 7.2438 -0.2913 22 6 1.6728 4.6449 0.4491 23 6 2.0649 3.5324 1.1744 24 1 -0.3633 0.4991 -0.8983 25 1 -0.3633 0.5285 0.8814 26 1 -0.3633 -1.0274 0.0170 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 0.5790 1.9920 -1.4032 30 1 1.9339 3.1237 -1.1759 31 1 1.2541 3.2677 -4.7918 32 1 1.3457 1.6071 3.2864 33 1 2.2832 0.4237 2.3180 34 1 3.4988 2.4165 3.8047 35 1 4.2033 1.7890 2.2841 36 1 4.5816 4.9160 2.9439 37 1 3.8834 6.8903 1.6541 38 1 0.8549 4.5696 -0.2521 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343542058.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:58 Heat of formation + Delta-G solvation = 22.615247 kcal Electronic energy + Delta-G solvation = -20046.573989 eV Core-core repulsion = 17107.500910 eV Total energy + Delta-G solvation = -2939.073079 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.13907 -37.30392 -36.10613 -34.26017 -32.45425 -31.15875 -29.17779 -28.54871 -27.16300 -25.18666 -23.22033 -22.51060 -21.19563 -20.48771 -18.81788 -16.31927 -16.13893 -15.86885 -15.34678 -15.12480 -14.50754 -14.10345 -13.66822 -13.34251 -13.06846 -12.92317 -12.79803 -12.44391 -11.87754 -11.63728 -11.53522 -11.32212 -11.11084 -11.00694 -10.94263 -10.89422 -10.69855 -10.49079 -10.44377 -10.27672 -10.01196 -9.72108 -9.13898 -8.54213 -8.36627 -8.11728 -7.16913 -5.99305 -3.99397 1.49290 1.61749 2.47032 3.32708 3.39493 3.43369 3.90284 4.44948 4.66979 4.82558 5.01196 5.22393 5.29549 5.36699 5.40586 5.54447 5.62148 5.73121 5.83139 5.85994 5.97839 5.99833 6.11166 6.12820 6.18833 6.34534 6.40231 6.44628 6.53685 6.58345 6.68142 6.87666 6.96526 7.11611 7.35987 7.41816 7.82270 8.12695 8.21771 8.57072 9.06798 9.63699 11.11350 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.012697 B = 0.007469 C = 0.005381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.657436 B = 3747.770692 C = 5202.488582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.058 3.942 3 N -0.522 5.522 4 C 0.182 3.818 5 C -0.504 4.504 6 H 0.061 0.939 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.116 3.884 14 H 0.046 0.954 15 C -0.116 4.116 16 C -0.071 4.071 17 C -0.082 4.082 18 C -0.107 4.107 19 C -0.114 4.114 20 C -0.037 4.037 21 Cl -0.078 7.078 22 C -0.077 4.077 23 C -0.060 4.060 24 H 0.065 0.935 25 H 0.045 0.955 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.084 0.916 29 H -0.005 1.005 30 H 0.041 0.959 31 H 0.260 0.740 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.124 0.876 37 H 0.128 0.872 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.070 1.854 13.572 13.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.070 4.070 3 N -0.246 5.246 4 C 0.058 3.942 5 C -0.543 4.543 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.721 3.279 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.007 3.993 14 H 0.063 0.937 15 C -0.154 4.154 16 C -0.108 4.108 17 C -0.083 4.083 18 C -0.125 4.125 19 C -0.133 4.133 20 C -0.063 4.063 21 Cl -0.049 7.049 22 C -0.096 4.096 23 C -0.060 4.060 24 H 0.084 0.916 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.102 0.898 29 H 0.013 0.987 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.142 0.858 37 H 0.146 0.854 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.474 2.075 13.362 13.602 hybrid contribution -0.516 -0.064 -1.273 1.375 sum 0.958 2.011 12.089 12.293 Atomic orbital electron populations 1.22398 0.99491 1.00985 1.01961 1.22056 0.92032 0.91306 1.01606 1.62460 1.58158 1.01392 1.02556 1.19942 0.94554 0.95256 0.84495 1.21117 1.26004 1.16339 0.90848 0.92079 1.24943 0.95538 0.95167 0.98813 1.69944 1.36970 1.25140 1.21477 0.86571 0.80181 0.78910 0.82194 1.20834 1.21315 1.19853 1.21065 0.96615 0.88938 0.92637 0.93656 1.22395 0.96518 1.00368 0.96108 1.20946 0.99202 0.91535 0.99079 1.20660 0.95395 0.94824 0.97397 1.20423 1.00200 0.91375 1.00494 1.20802 0.96645 0.99253 0.96596 1.20650 0.99070 0.88801 0.97799 1.98347 1.91046 1.41617 1.73873 1.20648 1.00455 0.90121 0.98360 1.20347 0.96388 0.94221 0.95093 0.91559 0.93592 0.93340 0.92620 0.89772 0.98744 0.94119 0.93008 0.91520 0.89762 0.91405 0.89642 0.85818 0.85387 0.84864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.24 9.25 37.16 0.34 -2.89 16 2 C 0.06 1.07 5.65 -3.82 -0.02 1.04 16 3 N -0.52 -10.78 4.58 -228.23 -1.04 -11.82 16 4 C 0.18 4.60 4.29 -4.98 -0.02 4.58 16 5 C -0.50 -14.00 8.44 -34.44 -0.29 -14.29 16 6 H 0.06 1.69 7.13 -52.49 -0.37 1.31 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 9 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.12 2.04 2.18 -67.83 -0.15 1.89 16 14 H 0.05 0.81 6.27 -51.93 -0.33 0.49 16 15 C -0.12 -1.60 6.58 -25.32 -0.17 -1.77 16 16 C -0.07 -0.94 6.77 -26.84 -0.18 -1.13 16 17 C -0.08 -1.29 6.14 -104.20 -0.64 -1.93 16 18 C -0.11 -1.51 10.04 -39.54 -0.40 -1.91 16 19 C -0.11 -1.69 9.83 -39.59 -0.39 -2.08 16 20 C -0.04 -0.63 6.32 -39.54 -0.25 -0.88 16 21 Cl -0.08 -1.26 28.96 -51.86 -1.50 -2.77 16 22 C -0.08 -1.45 8.00 -39.50 -0.32 -1.77 16 23 C -0.06 -1.08 5.03 -104.21 -0.52 -1.61 16 24 H 0.07 1.32 6.45 -51.93 -0.34 0.99 16 25 H 0.05 0.72 6.32 -51.93 -0.33 0.39 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.87 6.16 -51.93 -0.32 0.55 16 28 H 0.08 1.71 6.73 -51.93 -0.35 1.36 16 29 H -0.01 -0.14 6.20 -51.93 -0.32 -0.46 16 30 H 0.04 1.10 4.93 -51.93 -0.26 0.85 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.12 5.94 -51.93 -0.31 0.81 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 37 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.13 2.71 7.59 -52.49 -0.40 2.31 16 LS Contribution 312.37 15.07 4.71 4.71 Total: -1.00 -29.58 312.37 -10.21 -39.79 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -4.99 Total: 0.29 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: -3.10 Total: -21.23 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: -0.31 Total: -37.55 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -1.50 Total: -2.77 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.58 -10.21 -39.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343542058.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.403 kcal (2) G-P(sol) polarization free energy of solvation -29.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds