Wall clock time and date at job start Tue Mar 31 2020 01:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46902 * 109.47462 * 2 1 4 4 C 1.46899 * 110.99752 * 294.71978 * 3 2 1 5 5 C 1.50698 * 109.47187 * 293.95138 * 4 3 2 6 6 H 1.07999 * 120.00023 * 0.02562 * 5 4 3 7 7 C 1.37868 * 119.99957 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00415 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00235 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47146 * 89.99798 * 9 7 5 11 11 H 1.48501 * 109.47657 * 210.00204 * 9 7 5 12 12 H 1.48509 * 109.46675 * 329.99978 * 9 7 5 13 13 C 1.46907 * 110.99484 * 58.67130 * 3 2 1 14 14 H 1.08995 * 110.27280 * 300.74752 * 13 3 2 15 15 C 1.54335 * 110.30326 * 62.82716 * 13 3 2 16 16 C 1.54352 * 102.39661 * 92.56626 * 15 13 3 17 17 C 1.51378 * 105.16566 * 26.35211 * 16 15 13 18 18 C 1.38506 * 130.37166 * 162.78844 * 17 16 15 19 19 C 1.38083 * 120.23225 * 180.02562 * 18 17 16 20 20 C 1.38370 * 119.92293 * 359.97438 * 19 18 17 21 21 Cl 1.73596 * 120.04973 * 180.02562 * 20 19 18 22 22 C 1.38221 * 119.90295 * 0.02562 * 20 19 18 23 23 C 1.38222 * 109.75715 * 342.80809 * 17 16 15 24 24 H 1.08998 * 109.46771 * 60.94229 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.94695 * 1 2 3 26 26 H 1.08992 * 109.47165 * 180.94744 * 1 2 3 27 27 H 1.09002 * 109.46941 * 119.99851 * 2 1 3 28 28 H 1.08996 * 109.47352 * 239.99877 * 2 1 3 29 29 H 1.08999 * 109.46802 * 53.95447 * 4 3 2 30 30 H 1.08996 * 109.46932 * 173.94936 * 4 3 2 31 31 H 0.96994 * 120.00448 * 179.97438 * 8 7 5 32 32 H 1.08996 * 110.82369 * 210.78937 * 15 13 3 33 33 H 1.09006 * 110.82569 * 334.14119 * 15 13 3 34 34 H 1.09000 * 110.30086 * 145.27417 * 16 15 13 35 35 H 1.08990 * 110.30139 * 267.42952 * 16 15 13 36 36 H 1.08007 * 119.88788 * 359.97438 * 18 17 16 37 37 H 1.08000 * 120.03709 * 180.02562 * 19 18 17 38 38 H 1.08000 * 119.89787 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.6546 2.0724 -1.2458 5 6 2.3806 1.4354 -2.4025 6 1 3.0465 0.6029 -2.2296 7 6 2.1949 1.9155 -3.6815 8 7 1.3845 2.9297 -3.8921 9 14 3.0944 1.1255 -5.1155 10 1 2.2663 0.0268 -5.6744 11 1 3.3403 2.1444 -6.1675 12 1 4.3917 0.5772 -4.6444 13 6 1.5229 2.1190 1.1716 14 1 0.4330 2.1302 1.1758 15 6 2.0570 1.4790 2.4705 16 6 3.3449 2.2882 2.7333 17 6 3.1117 3.6296 2.0717 18 6 3.7640 4.8395 2.2422 19 6 3.3722 5.9486 1.5190 20 6 2.3246 5.8517 0.6202 21 17 1.8298 7.2438 -0.2913 22 6 1.6728 4.6449 0.4491 23 6 2.0649 3.5324 1.1744 24 1 -0.3633 0.4991 -0.8983 25 1 -0.3633 0.5285 0.8814 26 1 -0.3633 -1.0274 0.0170 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 0.5790 1.9920 -1.4032 30 1 1.9339 3.1237 -1.1759 31 1 1.2541 3.2677 -4.7918 32 1 1.3457 1.6071 3.2864 33 1 2.2832 0.4237 2.3180 34 1 3.4988 2.4165 3.8047 35 1 4.2033 1.7890 2.2841 36 1 4.5816 4.9160 2.9439 37 1 3.8834 6.8903 1.6541 38 1 0.8549 4.5696 -0.2521 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343542058.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:57 Heat of formation + Delta-G solvation = 5.964949 kcal Electronic energy + Delta-G solvation = -20047.296000 eV Core-core repulsion = 17107.500910 eV Total energy + Delta-G solvation = -2939.795090 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.42470 -38.73196 -37.45523 -35.65370 -34.47152 -32.44512 -30.79579 -29.81056 -28.79342 -26.75408 -24.94358 -23.79810 -22.70632 -21.72916 -20.25702 -18.34362 -17.54243 -17.28750 -16.70097 -16.62153 -16.21397 -15.57424 -15.00372 -14.78735 -14.46444 -14.37827 -14.15961 -13.94405 -13.54412 -13.13906 -12.98047 -12.83676 -12.66409 -12.56271 -12.41305 -12.28859 -12.18743 -12.11078 -11.83176 -11.65049 -11.55343 -11.29135 -11.13704 -10.57722 -9.81588 -9.37781 -8.84101 -8.16842 -6.25036 0.23448 0.34809 1.17453 1.37813 1.39337 1.50269 2.39730 2.64070 3.15883 3.40931 3.58172 3.63515 3.99628 4.14974 4.22522 4.29536 4.36599 4.42245 4.47178 4.64991 4.67507 4.71306 4.87889 4.93752 5.02167 5.06591 5.10484 5.17934 5.26438 5.29830 5.31759 5.40884 5.45870 5.52930 5.68817 5.72017 5.92326 6.12539 6.43097 6.71264 6.91549 7.43123 8.93350 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.012697 B = 0.007469 C = 0.005381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.657436 B = 3747.770692 C = 5202.488582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.056 3.944 3 N -0.527 5.527 4 C 0.201 3.799 5 C -0.517 4.517 6 H 0.060 0.940 7 C 0.002 3.998 8 N -0.932 5.932 9 Si 0.961 3.039 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.265 1.265 13 C 0.110 3.890 14 H 0.032 0.968 15 C -0.106 4.106 16 C -0.066 4.066 17 C -0.083 4.083 18 C -0.098 4.098 19 C -0.109 4.109 20 C -0.053 4.053 21 Cl -0.081 7.081 22 C -0.105 4.105 23 C -0.090 4.090 24 H 0.024 0.976 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.059 0.941 29 H -0.037 1.037 30 H 0.017 0.983 31 H 0.261 0.739 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.167 0.833 37 H 0.158 0.842 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.121 0.794 15.960 16.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.071 4.071 3 N -0.251 5.251 4 C 0.075 3.925 5 C -0.556 4.556 6 H 0.078 0.922 7 C -0.196 4.196 8 N -0.572 5.572 9 Si 0.786 3.214 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.189 1.189 13 C 0.002 3.998 14 H 0.050 0.950 15 C -0.144 4.144 16 C -0.102 4.102 17 C -0.084 4.084 18 C -0.116 4.116 19 C -0.128 4.128 20 C -0.079 4.079 21 Cl -0.052 7.052 22 C -0.124 4.124 23 C -0.090 4.090 24 H 0.043 0.957 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.113 0.887 28 H 0.078 0.922 29 H -0.020 1.020 30 H 0.035 0.965 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.124 0.876 35 H 0.102 0.898 36 H 0.184 0.816 37 H 0.175 0.825 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.524 0.998 15.771 16.190 hybrid contribution -1.180 0.299 -1.958 2.306 sum 2.344 1.296 13.812 14.070 Atomic orbital electron populations 1.22287 0.98732 1.02297 1.00529 1.22124 0.92699 0.90060 1.02252 1.62361 1.58619 1.02345 1.01728 1.19500 0.92140 0.94314 0.86512 1.21471 1.25855 1.16207 0.92020 0.92197 1.25825 0.96349 0.95667 1.01721 1.70093 1.38518 1.26644 1.21994 0.85513 0.79210 0.78074 0.78631 1.19846 1.21146 1.18932 1.21262 0.96121 0.89267 0.93185 0.94978 1.22425 0.97259 1.00532 0.94161 1.21010 0.98527 0.89582 1.01117 1.21092 0.94196 0.96631 0.96480 1.20911 1.00344 0.90183 1.00135 1.21203 0.95385 1.00959 0.95250 1.20844 1.00046 0.88208 0.98822 1.98335 1.91243 1.41434 1.74166 1.20546 1.00753 0.91997 0.99117 1.20551 0.98085 0.94040 0.96361 0.95665 0.92229 0.90630 0.88722 0.92215 1.01985 0.96532 0.93066 0.89004 0.88812 0.87560 0.89836 0.81586 0.82482 0.88514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.16 9.25 71.98 0.67 -5.50 16 2 C 0.06 2.04 5.65 86.30 0.49 2.53 16 3 N -0.53 -22.10 4.58 -875.98 -4.01 -26.11 16 4 C 0.20 10.75 4.29 85.56 0.37 11.12 16 5 C -0.52 -29.69 8.44 25.60 0.22 -29.48 16 6 H 0.06 3.37 7.13 -2.91 -0.02 3.35 16 7 C 0.00 0.12 5.46 84.65 0.46 0.59 16 8 N -0.93 -57.51 13.29 21.44 0.28 -57.23 16 9 Si 0.96 45.48 29.54 68.60 2.03 47.50 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 12 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 13 C 0.11 3.85 2.18 44.84 0.10 3.95 16 14 H 0.03 1.19 6.27 -2.39 -0.01 1.18 16 15 C -0.11 -2.59 6.58 31.51 0.21 -2.38 16 16 C -0.07 -1.49 6.77 30.52 0.21 -1.28 16 17 C -0.08 -2.42 6.14 -19.59 -0.12 -2.54 16 18 C -0.10 -2.45 10.04 22.30 0.22 -2.22 16 19 C -0.11 -3.03 9.83 22.26 0.22 -2.81 16 20 C -0.05 -1.84 6.32 22.30 0.14 -1.70 16 21 Cl -0.08 -2.71 28.96 -2.72 -0.08 -2.79 16 22 C -0.10 -4.20 8.00 22.32 0.18 -4.03 16 23 C -0.09 -3.28 5.03 -19.60 -0.10 -3.38 16 24 H 0.02 1.05 6.45 -2.39 -0.02 1.03 16 25 H 0.06 1.85 6.32 -2.39 -0.02 1.84 16 26 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.09 2.70 6.16 -2.39 -0.01 2.68 16 28 H 0.06 2.44 6.73 -2.39 -0.02 2.43 16 29 H -0.04 -2.19 6.20 -2.39 -0.01 -2.21 16 30 H 0.02 0.97 4.93 -2.39 -0.01 0.96 16 31 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 32 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.09 2.10 5.94 -2.38 -0.01 2.09 16 34 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.17 2.75 8.06 -2.91 -0.02 2.73 16 37 H 0.16 3.37 8.06 -2.91 -0.02 3.34 16 38 H 0.10 4.44 7.59 -2.91 -0.02 4.42 16 Total: -1.00 -68.20 312.37 2.54 -65.66 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 1.07 Total: 10.09 kcal Atomic # 6 Polarization: -40.39 SS G_CDS: 3.25 Total: -37.14 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: -3.72 Total: -83.33 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Atomic # 17 Polarization: -2.71 SS G_CDS: -0.08 Total: -2.79 kcal Total: -68.20 2.54 -65.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343542058.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.625 kcal (2) G-P(sol) polarization free energy of solvation -68.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds