Wall clock time and date at job start Tue Mar 31 2020 00:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50700 * 109.47105 * 2 1 4 4 C 1.38267 * 119.99296 * 265.02460 * 3 2 1 5 5 C 1.38217 * 120.02324 * 179.97438 * 4 3 2 6 6 C 1.38229 * 120.01984 * 359.97438 * 5 4 3 7 7 C 1.38338 * 119.98205 * 359.67823 * 6 5 4 8 8 Cl 1.73603 * 120.01432 * 180.31305 * 7 6 5 9 9 C 1.38190 * 119.99516 * 84.99535 * 3 2 1 10 10 C 1.50701 * 120.00776 * 0.03173 * 9 3 2 11 11 N 1.46502 * 109.47317 * 89.99153 * 10 9 3 12 12 C 1.36936 * 119.99569 * 90.00347 * 11 10 9 13 13 H 1.08002 * 119.99666 * 221.37501 * 12 11 10 14 14 C 1.38812 * 120.00350 * 41.38033 * 12 11 10 15 15 N 1.31619 * 119.99792 * 16.95787 * 14 12 11 16 16 Si 1.86803 * 119.99925 * 196.96730 * 14 12 11 17 17 H 1.48501 * 109.46887 * 179.97438 * 16 14 12 18 18 H 1.48497 * 109.46992 * 299.99645 * 16 14 12 19 19 H 1.48502 * 109.47064 * 59.99892 * 16 14 12 20 20 C 1.46494 * 120.00241 * 270.00390 * 11 10 9 21 21 C 1.52996 * 117.50108 * 183.02396 * 20 11 10 22 22 C 1.53002 * 60.00155 * 252.50641 * 21 20 11 23 23 H 1.09001 * 109.46668 * 299.99753 * 1 2 3 24 24 H 1.08992 * 109.47323 * 60.00094 * 1 2 3 25 25 H 1.08997 * 109.46821 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47179 * 240.00144 * 2 1 3 27 27 H 1.09000 * 109.46960 * 119.99895 * 2 1 3 28 28 H 1.08000 * 119.98508 * 359.97438 * 4 3 2 29 29 H 1.08001 * 119.99028 * 179.97438 * 5 4 3 30 30 H 1.07999 * 120.00981 * 179.97438 * 6 5 4 31 31 H 1.09007 * 109.46934 * 329.99745 * 10 9 3 32 32 H 1.09003 * 109.47541 * 209.99841 * 10 9 3 33 33 H 0.97004 * 119.99611 * 174.83598 * 15 14 12 34 34 H 1.09007 * 115.55095 * 328.72875 * 20 11 10 35 35 H 1.09003 * 117.49923 * 359.97438 * 21 20 11 36 36 H 1.09003 * 117.50057 * 145.01654 * 21 20 11 37 37 H 1.08992 * 117.50000 * 252.50780 * 22 21 20 38 38 H 1.08997 * 117.51251 * 107.47369 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3607 2.0379 -1.1930 5 6 2.8210 3.3411 -1.1938 6 6 2.9529 4.0287 -0.0019 7 6 2.6177 3.4143 1.1914 8 17 2.7753 4.2797 2.6880 9 6 2.1642 2.1070 1.1923 10 6 1.8064 1.4343 2.4925 11 7 2.9879 0.7581 3.0339 12 6 3.8335 1.4278 3.8776 13 1 4.9023 1.3115 3.7751 14 6 3.3169 2.2560 4.8645 15 7 2.0527 2.1520 5.2156 16 14 4.4159 3.5183 5.6941 17 1 3.6298 4.2715 6.7040 18 1 5.5473 2.8265 6.3623 19 1 4.9441 4.4606 4.6752 20 6 3.2648 -0.6343 2.6727 21 6 4.4741 -1.3066 3.3259 22 6 4.5230 -0.9135 1.8480 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.2574 1.5012 -2.1245 29 1 3.0777 3.8225 -2.1259 30 1 3.3129 5.0469 -0.0026 31 1 1.0173 0.7028 2.3180 32 1 1.4576 2.1822 3.2046 33 1 1.7101 2.6773 5.9557 34 1 2.3885 -1.2529 2.4788 35 1 5.0639 -0.7126 4.0241 36 1 4.3934 -2.3676 3.5621 37 1 4.4745 -1.7159 1.1120 38 1 5.1445 -0.0610 1.5740 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355600392.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:56 Heat of formation + Delta-G solvation = 60.297247 kcal Electronic energy + Delta-G solvation = -20627.256726 eV Core-core repulsion = 17689.817661 eV Total energy + Delta-G solvation = -2937.439065 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 2.69 seconds Orbital eigenvalues (eV) -39.21084 -36.87657 -35.56913 -33.87288 -33.36138 -31.31868 -29.46279 -28.87670 -25.64406 -24.02310 -23.02749 -21.39042 -21.16834 -20.28907 -19.60649 -16.56018 -15.84659 -15.62572 -15.24956 -14.70009 -14.31680 -13.82580 -13.61077 -13.36228 -13.12782 -12.83388 -12.47318 -12.08651 -11.80643 -11.52845 -11.40957 -11.15248 -10.92591 -10.86082 -10.70410 -10.59449 -10.32734 -10.25148 -10.15070 -9.91402 -9.55674 -9.48764 -9.22987 -8.35765 -8.06825 -7.88476 -6.43514 -5.80665 -3.38895 1.79458 1.88796 3.00002 3.40016 3.42659 3.48870 4.17348 4.47115 4.95343 5.16966 5.26882 5.35490 5.39001 5.50818 5.57533 5.66812 5.75743 5.85776 5.94563 5.98895 6.07808 6.15701 6.24950 6.28356 6.33782 6.48148 6.54495 6.59225 6.66776 6.69543 6.82887 6.99134 7.03947 7.16270 7.20217 7.43397 7.66195 7.85364 8.55652 9.17670 9.78848 10.36707 11.21601 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015303 B = 0.009818 C = 0.007247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.256891 B = 2851.164461 C = 3862.620809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.068 4.068 4 C -0.127 4.127 5 C -0.128 4.128 6 C -0.129 4.129 7 C -0.018 4.018 8 Cl -0.052 7.052 9 C -0.065 4.065 10 C 0.171 3.829 11 N -0.536 5.536 12 C -0.259 4.259 13 H 0.055 0.945 14 C 0.043 3.957 15 N -0.882 5.882 16 Si 0.874 3.126 17 H -0.290 1.290 18 H -0.280 1.280 19 H -0.271 1.271 20 C 0.128 3.872 21 C -0.188 4.188 22 C -0.227 4.227 23 H 0.060 0.940 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.090 0.910 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.041 0.959 32 H 0.114 0.886 33 H 0.257 0.743 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.670 -1.109 -10.227 10.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 C -0.069 4.069 4 C -0.145 4.145 5 C -0.147 4.147 6 C -0.148 4.148 7 C -0.045 4.045 8 Cl -0.023 7.023 9 C -0.069 4.069 10 C 0.045 3.955 11 N -0.251 5.251 12 C -0.389 4.389 13 H 0.073 0.927 14 C -0.158 4.158 15 N -0.523 5.523 16 Si 0.702 3.298 17 H -0.216 1.216 18 H -0.206 1.206 19 H -0.197 1.197 20 C 0.019 3.981 21 C -0.226 4.226 22 C -0.268 4.268 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.108 0.892 28 H 0.132 0.868 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.060 0.940 32 H 0.132 0.868 33 H 0.067 0.933 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.816 -0.881 -9.926 10.129 hybrid contribution 0.893 0.864 0.433 1.316 sum -0.922 -0.017 -9.492 9.537 Atomic orbital electron populations 1.21766 0.95309 1.01191 1.02039 1.20694 0.95643 0.93127 1.03422 1.19658 0.99232 0.95966 0.92062 1.20945 1.01108 0.95141 0.97302 1.20797 1.01988 0.95005 0.96925 1.20933 1.02306 1.00108 0.91420 1.20895 1.02434 0.93703 0.87507 1.98384 1.95898 1.75935 1.32053 1.20973 0.96080 0.91804 0.98005 1.20204 0.88733 0.97177 0.89340 1.43137 1.27498 1.04738 1.49754 1.18699 0.88666 1.22817 1.08678 0.92702 1.25070 0.95542 0.99474 0.95762 1.69797 1.13668 1.41423 1.27385 0.86796 0.80789 0.82738 0.79437 1.21551 1.20587 1.19705 1.21111 0.89347 0.87677 0.99967 1.23022 1.04962 0.99050 0.95596 1.23401 1.07650 1.02387 0.93347 0.92101 0.93168 0.92851 0.91998 0.89168 0.86827 0.86506 0.86293 0.94035 0.86843 0.93295 0.89810 0.88226 0.90738 0.91052 0.89947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.70 37.16 0.36 -1.61 16 2 C -0.09 -1.40 5.37 -27.88 -0.15 -1.55 16 3 C -0.07 -1.19 5.13 -104.63 -0.54 -1.73 16 4 C -0.13 -1.97 9.68 -39.58 -0.38 -2.36 16 5 C -0.13 -1.97 10.04 -39.59 -0.40 -2.37 16 6 C -0.13 -2.24 9.83 -39.55 -0.39 -2.63 16 7 C -0.02 -0.36 6.31 -39.50 -0.25 -0.61 16 8 Cl -0.05 -1.14 23.15 -51.86 -1.20 -2.34 16 9 C -0.06 -1.32 5.47 -104.59 -0.57 -1.89 16 10 C 0.17 3.85 4.58 -5.19 -0.02 3.82 16 11 N -0.54 -12.68 2.72 -167.02 -0.45 -13.14 16 12 C -0.26 -6.75 7.71 -15.06 -0.12 -6.87 16 13 H 0.06 1.49 7.09 -52.49 -0.37 1.12 16 14 C 0.04 1.14 3.25 -17.43 -0.06 1.08 16 15 N -0.88 -24.07 11.46 55.49 0.64 -23.43 16 16 Si 0.87 21.32 28.02 -169.99 -4.76 16.56 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 C 0.13 2.65 4.87 -67.93 -0.33 2.31 16 21 C -0.19 -3.70 9.79 -26.73 -0.26 -3.96 16 22 C -0.23 -4.29 10.36 -26.73 -0.28 -4.56 16 23 H 0.06 0.90 6.91 -51.93 -0.36 0.54 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.83 8.05 -51.93 -0.42 0.41 16 27 H 0.09 1.51 3.71 -51.93 -0.19 1.31 16 28 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 31 H 0.04 0.88 5.36 -51.92 -0.28 0.60 16 32 H 0.11 2.88 4.38 -51.93 -0.23 2.65 16 33 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 34 H 0.08 1.62 6.99 -51.92 -0.36 1.26 16 35 H 0.10 2.17 6.65 -51.93 -0.35 1.82 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 LS Contribution 311.10 15.07 4.69 4.69 Total: -1.00 -27.23 311.10 -9.55 -36.78 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -5.07 Total: 3.78 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -3.38 Total: -22.91 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.18 Total: -36.57 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.76 Total: 16.56 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.20 Total: -2.34 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.23 -9.55 -36.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355600392.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.078 kcal (2) G-P(sol) polarization free energy of solvation -27.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.69 seconds