Wall clock time and date at job start Tue Mar 31 2020 00:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50700 * 109.47105 * 2 1 4 4 C 1.38267 * 119.99296 * 265.02460 * 3 2 1 5 5 C 1.38217 * 120.02324 * 179.97438 * 4 3 2 6 6 C 1.38229 * 120.01984 * 359.97438 * 5 4 3 7 7 C 1.38338 * 119.98205 * 359.67823 * 6 5 4 8 8 Cl 1.73603 * 120.01432 * 180.31305 * 7 6 5 9 9 C 1.38190 * 119.99516 * 84.99535 * 3 2 1 10 10 C 1.50701 * 120.00776 * 0.03173 * 9 3 2 11 11 N 1.46502 * 109.47317 * 89.99153 * 10 9 3 12 12 C 1.36936 * 119.99569 * 90.00347 * 11 10 9 13 13 H 1.08002 * 119.99666 * 221.37501 * 12 11 10 14 14 C 1.38812 * 120.00350 * 41.38033 * 12 11 10 15 15 N 1.31619 * 119.99792 * 16.95787 * 14 12 11 16 16 Si 1.86803 * 119.99925 * 196.96730 * 14 12 11 17 17 H 1.48501 * 109.46887 * 179.97438 * 16 14 12 18 18 H 1.48497 * 109.46992 * 299.99645 * 16 14 12 19 19 H 1.48502 * 109.47064 * 59.99892 * 16 14 12 20 20 C 1.46494 * 120.00241 * 270.00390 * 11 10 9 21 21 C 1.52996 * 117.50108 * 183.02396 * 20 11 10 22 22 C 1.53002 * 60.00155 * 252.50641 * 21 20 11 23 23 H 1.09001 * 109.46668 * 299.99753 * 1 2 3 24 24 H 1.08992 * 109.47323 * 60.00094 * 1 2 3 25 25 H 1.08997 * 109.46821 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47179 * 240.00144 * 2 1 3 27 27 H 1.09000 * 109.46960 * 119.99895 * 2 1 3 28 28 H 1.08000 * 119.98508 * 359.97438 * 4 3 2 29 29 H 1.08001 * 119.99028 * 179.97438 * 5 4 3 30 30 H 1.07999 * 120.00981 * 179.97438 * 6 5 4 31 31 H 1.09007 * 109.46934 * 329.99745 * 10 9 3 32 32 H 1.09003 * 109.47541 * 209.99841 * 10 9 3 33 33 H 0.97004 * 119.99611 * 174.83598 * 15 14 12 34 34 H 1.09007 * 115.55095 * 328.72875 * 20 11 10 35 35 H 1.09003 * 117.49923 * 359.97438 * 21 20 11 36 36 H 1.09003 * 117.50057 * 145.01654 * 21 20 11 37 37 H 1.08992 * 117.50000 * 252.50780 * 22 21 20 38 38 H 1.08997 * 117.51251 * 107.47369 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3607 2.0379 -1.1930 5 6 2.8210 3.3411 -1.1938 6 6 2.9529 4.0287 -0.0019 7 6 2.6177 3.4143 1.1914 8 17 2.7753 4.2797 2.6880 9 6 2.1642 2.1070 1.1923 10 6 1.8064 1.4343 2.4925 11 7 2.9879 0.7581 3.0339 12 6 3.8335 1.4278 3.8776 13 1 4.9023 1.3115 3.7751 14 6 3.3169 2.2560 4.8645 15 7 2.0527 2.1520 5.2156 16 14 4.4159 3.5183 5.6941 17 1 3.6298 4.2715 6.7040 18 1 5.5473 2.8265 6.3623 19 1 4.9441 4.4606 4.6752 20 6 3.2648 -0.6343 2.6727 21 6 4.4741 -1.3066 3.3259 22 6 4.5230 -0.9135 1.8480 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.2574 1.5012 -2.1245 29 1 3.0777 3.8225 -2.1259 30 1 3.3129 5.0469 -0.0026 31 1 1.0173 0.7028 2.3180 32 1 1.4576 2.1822 3.2046 33 1 1.7101 2.6773 5.9557 34 1 2.3885 -1.2529 2.4788 35 1 5.0639 -0.7126 4.0241 36 1 4.3934 -2.3676 3.5621 37 1 4.4745 -1.7159 1.1120 38 1 5.1445 -0.0610 1.5740 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355600392.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:55 Heat of formation + Delta-G solvation = 47.962098 kcal Electronic energy + Delta-G solvation = -20627.791619 eV Core-core repulsion = 17689.817661 eV Total energy + Delta-G solvation = -2937.973957 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.59795 -38.50069 -37.12077 -35.40975 -34.83963 -33.02963 -31.06945 -30.14315 -27.40398 -25.57445 -24.41163 -22.92410 -22.58790 -21.78726 -21.16253 -18.30220 -17.45235 -17.13639 -16.74653 -16.24022 -15.97230 -15.52220 -15.04329 -14.77689 -14.39145 -14.22901 -13.97573 -13.54879 -13.36493 -13.16599 -12.88703 -12.74402 -12.64663 -12.42732 -12.23424 -12.12275 -12.07250 -11.75238 -11.59474 -11.56554 -11.23009 -11.07484 -10.80715 -10.31262 -9.40838 -9.33187 -8.32539 -7.77680 -5.39383 0.44127 0.54072 1.25267 1.40048 1.44915 1.71228 2.47349 2.84534 3.27700 3.49007 3.69957 3.94706 4.09184 4.22709 4.29399 4.38888 4.41075 4.52004 4.59781 4.65318 4.72083 4.79846 4.88737 4.96195 4.97652 5.09587 5.17184 5.25641 5.32315 5.41486 5.47813 5.53363 5.57074 5.63592 5.68719 5.78226 5.97258 6.14824 6.56739 7.24756 7.91417 8.43997 9.18746 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015303 B = 0.009818 C = 0.007247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.256891 B = 2851.164461 C = 3862.620809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 C -0.071 4.071 4 C -0.121 4.121 5 C -0.115 4.115 6 C -0.138 4.138 7 C -0.045 4.045 8 Cl -0.082 7.082 9 C -0.090 4.090 10 C 0.179 3.821 11 N -0.551 5.551 12 C -0.251 4.251 13 H 0.037 0.963 14 C 0.017 3.983 15 N -0.903 5.903 16 Si 0.903 3.097 17 H -0.294 1.294 18 H -0.279 1.279 19 H -0.271 1.271 20 C 0.110 3.890 21 C -0.191 4.191 22 C -0.201 4.201 23 H 0.037 0.963 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.152 0.848 29 H 0.157 0.843 30 H 0.133 0.867 31 H 0.045 0.955 32 H 0.082 0.918 33 H 0.250 0.750 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.546 -2.352 -13.479 13.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.128 4.128 3 C -0.072 4.072 4 C -0.139 4.139 5 C -0.133 4.133 6 C -0.156 4.156 7 C -0.072 4.072 8 Cl -0.054 7.054 9 C -0.093 4.093 10 C 0.053 3.947 11 N -0.267 5.267 12 C -0.381 4.381 13 H 0.054 0.946 14 C -0.182 4.182 15 N -0.546 5.546 16 Si 0.732 3.268 17 H -0.220 1.220 18 H -0.205 1.205 19 H -0.197 1.197 20 C 0.002 3.998 21 C -0.229 4.229 22 C -0.241 4.241 23 H 0.056 0.944 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.106 0.894 27 H 0.091 0.909 28 H 0.170 0.830 29 H 0.175 0.825 30 H 0.151 0.849 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.118 0.882 35 H 0.089 0.911 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.680 -2.131 -13.199 13.475 hybrid contribution 0.853 1.213 1.285 1.962 sum -0.827 -0.917 -11.914 11.978 Atomic orbital electron populations 1.21723 0.94216 1.02351 1.01535 1.20730 0.96541 0.91702 1.03809 1.19962 0.98636 0.96974 0.91665 1.21387 0.99312 0.95292 0.97914 1.21280 0.99736 0.94866 0.97468 1.21199 1.02238 1.01029 0.91167 1.21177 1.04512 0.94165 0.87327 1.98361 1.96197 1.76497 1.34296 1.20812 0.98163 0.92258 0.98093 1.19936 0.88393 0.96420 0.89912 1.43241 1.27275 1.06120 1.50113 1.18594 0.88215 1.22695 1.08623 0.94554 1.25320 0.96014 1.00498 0.96408 1.69890 1.14526 1.42297 1.27881 0.86319 0.79918 0.81760 0.78784 1.22031 1.20520 1.19653 1.21311 0.90525 0.86585 1.01356 1.23038 1.03953 1.00145 0.95756 1.23280 1.05199 1.02204 0.93459 0.94405 0.91833 0.90894 0.89380 0.90858 0.83043 0.82510 0.84932 0.93709 0.90068 0.94013 0.88168 0.91084 0.87874 0.87636 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 9.70 71.98 0.70 -2.73 16 2 C -0.09 -2.48 5.37 29.85 0.16 -2.32 16 3 C -0.07 -2.31 5.13 -19.87 -0.10 -2.41 16 4 C -0.12 -3.23 9.68 22.27 0.22 -3.02 16 5 C -0.12 -3.06 10.04 22.26 0.22 -2.84 16 6 C -0.14 -4.54 9.83 22.29 0.22 -4.32 16 7 C -0.04 -1.82 6.31 22.33 0.14 -1.67 16 8 Cl -0.08 -3.74 23.15 -2.72 -0.06 -3.80 16 9 C -0.09 -3.63 5.47 -19.84 -0.11 -3.73 16 10 C 0.18 8.20 4.58 85.63 0.39 8.59 16 11 N -0.55 -26.41 2.72 -682.32 -1.85 -28.27 16 12 C -0.25 -13.44 7.71 84.03 0.65 -12.79 16 13 H 0.04 2.06 7.09 -2.91 -0.02 2.04 16 14 C 0.02 0.91 3.25 84.86 0.28 1.19 16 15 N -0.90 -51.14 11.46 21.65 0.25 -50.90 16 16 Si 0.90 44.89 28.02 68.60 1.92 46.82 16 17 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16 18 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 19 H -0.27 -13.28 7.11 99.48 0.71 -12.58 16 20 C 0.11 4.45 4.87 44.99 0.22 4.67 16 21 C -0.19 -7.30 9.79 30.59 0.30 -7.00 16 22 C -0.20 -7.19 10.36 30.60 0.32 -6.87 16 23 H 0.04 1.08 6.91 -2.39 -0.02 1.06 16 24 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.09 1.93 8.05 -2.39 -0.02 1.92 16 27 H 0.07 2.27 3.71 -2.39 -0.01 2.26 16 28 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 29 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 30 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 31 H 0.04 1.94 5.36 -2.38 -0.01 1.93 16 32 H 0.08 4.29 4.38 -2.39 -0.01 4.28 16 33 H 0.25 14.03 8.32 -92.71 -0.77 13.26 16 34 H 0.10 3.71 6.99 -2.38 -0.02 3.69 16 35 H 0.07 3.14 6.65 -2.39 -0.02 3.12 16 36 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 37 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 38 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -61.06 311.10 4.91 -56.15 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 1.06 Total: 15.25 kcal Atomic # 6 Polarization: -38.85 SS G_CDS: 3.60 Total: -35.25 kcal Atomic # 7 Polarization: -77.56 SS G_CDS: -1.61 Total: -79.16 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.92 Total: 46.82 kcal Atomic # 17 Polarization: -3.74 SS G_CDS: -0.06 Total: -3.80 kcal Total: -61.06 4.91 -56.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355600392.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.113 kcal (2) G-P(sol) polarization free energy of solvation -61.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds