Wall clock time and date at job start Tue Mar 31 2020 00:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47393 * 2 1 4 4 C 1.33635 * 126.03461 * 90.02745 * 3 2 1 5 5 N 1.31784 * 114.49868 * 180.02562 * 4 3 2 6 6 C 1.29022 * 117.12327 * 359.97438 * 5 4 3 7 7 C 1.50708 * 124.91485 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47028 * 89.98005 * 7 6 5 9 9 C 1.46898 * 110.99777 * 190.00415 * 8 7 6 10 10 C 1.50700 * 109.46764 * 169.23302 * 9 8 7 11 11 H 1.08002 * 120.00291 * 354.97417 * 10 9 8 12 12 C 1.37878 * 119.99924 * 174.97180 * 10 9 8 13 13 N 1.31520 * 119.99980 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00369 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46965 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47224 * 120.00048 * 14 12 10 17 17 H 1.48498 * 109.47322 * 240.00309 * 14 12 10 18 18 C 1.46900 * 110.99906 * 66.04470 * 8 7 6 19 19 C 1.52994 * 109.46794 * 62.06232 * 18 8 7 20 20 C 1.47208 * 109.47057 * 179.97438 * 19 18 8 21 21 N 7.17626 * 121.51392 * 298.44881 * 2 1 3 22 22 S 1.70975 * 110.16886 * 359.72954 * 6 5 4 23 23 H 1.09001 * 109.47198 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47144 * 59.99630 * 1 2 3 25 25 H 1.09004 * 109.46661 * 299.99552 * 1 2 3 26 26 H 1.09002 * 109.47144 * 120.00370 * 2 1 3 27 27 H 1.08999 * 109.46855 * 239.99999 * 2 1 3 28 28 H 1.08006 * 122.75286 * 0.02562 * 4 3 2 29 29 H 1.08993 * 109.47118 * 209.98434 * 7 6 5 30 30 H 1.09004 * 109.46581 * 329.97915 * 7 6 5 31 31 H 1.09004 * 109.46937 * 289.22851 * 9 8 7 32 32 H 1.08998 * 109.47703 * 49.22991 * 9 8 7 33 33 H 0.96997 * 120.00225 * 179.97438 * 13 12 10 34 34 H 1.09003 * 109.47097 * 182.06056 * 18 8 7 35 35 H 1.08994 * 109.47296 * 302.05858 * 18 8 7 36 36 H 1.08996 * 109.47274 * 299.93772 * 19 18 8 37 37 H 1.09001 * 109.47325 * 59.94456 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2950 2.1618 1.0807 5 7 2.7248 3.3793 0.8171 6 6 2.8399 3.7064 -0.4257 7 6 3.3127 5.0476 -0.9244 8 7 4.7726 5.0230 -1.0863 9 6 5.2968 6.3714 -1.3410 10 6 6.8002 6.3533 -1.2389 11 1 7.3097 5.4530 -0.9286 12 6 7.5254 7.4863 -1.5415 13 7 6.9051 8.5826 -1.9198 14 14 9.3889 7.4643 -1.4142 15 1 9.8390 6.1202 -0.9712 16 1 9.9794 7.7707 -2.7418 17 1 9.8299 8.4841 -0.4290 18 6 5.1683 4.0939 -2.1532 19 6 4.5777 4.5642 -3.4839 20 6 4.9747 3.6336 -4.5532 21 7 5.2811 2.9144 -5.3791 22 16 2.3848 2.3957 -1.4247 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 2.1655 1.7930 2.0875 29 1 2.8443 5.2640 -1.8845 30 1 3.0399 5.8196 -0.2049 31 1 5.0044 6.6920 -2.3409 32 1 4.8908 7.0643 -0.6040 33 1 7.4152 9.3797 -2.1323 34 1 6.2555 4.0676 -2.2273 35 1 4.7956 3.0960 -1.9227 36 1 3.4905 4.5895 -3.4102 37 1 4.9497 5.5627 -3.7139 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360896898.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:16 Heat of formation + Delta-G solvation = 67.862219 kcal Electronic energy + Delta-G solvation = -19024.912978 eV Core-core repulsion = 16122.138413 eV Total energy + Delta-G solvation = -2902.774566 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -39.65528 -37.90522 -35.97859 -34.42961 -32.74062 -30.93797 -29.63322 -27.56591 -25.91884 -24.44842 -23.38316 -22.53968 -20.35395 -18.86347 -18.04802 -17.39785 -16.35930 -15.56989 -15.36904 -14.79051 -14.70249 -14.32219 -14.16522 -13.94799 -13.63398 -13.38936 -13.16356 -12.55529 -12.31437 -12.14660 -12.09653 -11.80938 -11.76480 -11.57546 -11.28521 -11.20897 -10.94667 -10.76860 -10.69737 -10.36614 -10.02698 -9.44257 -9.29628 -9.04678 -8.68223 -8.51278 -7.51255 -6.11841 -4.13281 0.80884 1.43104 1.85742 2.98356 3.03629 3.07082 3.28039 3.36656 3.41180 4.25346 4.28087 4.40452 4.67638 4.81582 4.89025 5.04858 5.21864 5.25244 5.30729 5.37745 5.41692 5.50366 5.60148 5.61634 5.74848 5.87511 5.93471 5.98439 6.15789 6.28792 6.50838 7.04261 7.11915 7.65692 7.79158 7.89290 7.95483 7.98260 8.34562 8.94531 9.52063 10.98452 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.021307 B = 0.004610 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.776610 B = 6072.886089 C = 6809.383766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.043 4.043 3 C -0.232 4.232 4 C 0.039 3.961 5 N -0.460 5.460 6 C 0.079 3.921 7 C 0.117 3.883 8 N -0.516 5.516 9 C 0.187 3.813 10 C -0.509 4.509 11 H 0.066 0.934 12 C 0.059 3.941 13 N -0.896 5.896 14 Si 0.895 3.105 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.284 1.284 18 C 0.063 3.937 19 C -0.075 4.075 20 C 0.224 3.776 21 N -0.456 5.456 22 S 0.100 5.900 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.170 0.830 29 H 0.054 0.946 30 H 0.105 0.895 31 H 0.008 0.992 32 H 0.035 0.965 33 H 0.262 0.738 34 H 0.098 0.902 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.770 -12.260 2.249 17.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.083 4.083 3 C -0.353 4.353 4 C -0.113 4.113 5 N -0.173 5.173 6 C -0.200 4.200 7 C -0.014 4.014 8 N -0.240 5.240 9 C 0.063 3.937 10 C -0.548 4.548 11 H 0.084 0.916 12 C -0.143 4.143 13 N -0.535 5.535 14 Si 0.723 3.277 15 H -0.196 1.196 16 H -0.211 1.211 17 H -0.210 1.210 18 C -0.067 4.067 19 C -0.117 4.117 20 C -0.094 4.094 21 N -0.134 5.134 22 S 0.355 5.645 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.101 0.899 27 H 0.092 0.908 28 H 0.187 0.813 29 H 0.072 0.928 30 H 0.123 0.877 31 H 0.026 0.974 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.081 0.919 36 H 0.113 0.887 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.972 -13.030 0.752 17.711 hybrid contribution 0.477 0.436 0.543 0.844 sum -11.495 -12.593 1.296 17.100 Atomic orbital electron populations 1.21798 0.94418 1.01854 1.02456 1.19942 0.95957 0.89176 1.03251 1.25922 1.11629 1.02468 0.95261 1.21692 1.00852 0.88933 0.99786 1.66245 1.15047 1.17197 1.18807 1.27143 1.01241 1.00826 0.90838 1.20788 0.91078 0.89587 0.99949 1.62375 1.06069 1.13339 1.42207 1.19924 0.95829 0.81887 0.96042 1.21134 0.90649 0.97918 1.45087 0.91621 1.24940 0.98731 0.95419 0.95186 1.69941 1.35615 1.01911 1.46079 0.86480 0.85376 0.78235 0.77616 1.19609 1.21118 1.20972 1.22227 1.02871 0.95949 0.85683 1.20232 1.02219 0.97932 0.91303 1.29205 0.92827 0.93572 0.93750 1.81194 1.09642 1.11162 1.11415 1.83999 1.60745 1.07598 1.12140 0.92095 0.92526 0.92292 0.89934 0.90817 0.81321 0.92797 0.87713 0.97390 0.94702 0.92846 0.88331 0.91885 0.88687 0.85549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.89 37.16 0.37 -0.72 16 2 C -0.04 -0.37 6.47 -27.88 -0.18 -0.55 16 3 C -0.23 -2.69 5.85 -35.92 -0.21 -2.90 16 4 C 0.04 0.50 11.25 -19.19 -0.22 0.29 16 5 N -0.46 -7.34 10.54 -11.86 -0.13 -7.47 16 6 C 0.08 1.18 6.18 -13.45 -0.08 1.10 16 7 C 0.12 1.83 5.34 -4.97 -0.03 1.81 16 8 N -0.52 -9.62 4.69 -237.52 -1.11 -10.73 16 9 C 0.19 4.19 4.52 -4.98 -0.02 4.17 16 10 C -0.51 -12.99 8.39 -34.44 -0.29 -13.28 16 11 H 0.07 1.70 7.36 -52.49 -0.39 1.31 16 12 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 13 N -0.90 -24.67 13.29 55.43 0.74 -23.94 16 14 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 15 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 C 0.06 1.06 4.86 -3.83 -0.02 1.04 16 19 C -0.08 -1.10 5.05 -29.52 -0.15 -1.24 16 20 C 0.22 3.56 15.44 -20.72 -0.32 3.24 16 21 N -0.46 -8.13 18.55 42.20 0.78 -7.34 16 22 S 0.10 1.26 21.58 -107.50 -2.32 -1.06 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.17 1.78 8.06 -52.48 -0.42 1.36 16 29 H 0.05 0.72 6.07 -51.93 -0.32 0.40 16 30 H 0.10 1.68 7.92 -51.93 -0.41 1.27 16 31 H 0.01 0.19 6.03 -51.93 -0.31 -0.12 16 32 H 0.03 0.85 7.92 -51.93 -0.41 0.44 16 33 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.10 1.84 6.97 -51.93 -0.36 1.48 16 35 H 0.06 0.98 5.90 -51.93 -0.31 0.68 16 36 H 0.10 1.16 6.32 -51.93 -0.33 0.83 16 37 H 0.13 2.02 6.30 -51.93 -0.33 1.69 16 LS Contribution 326.06 15.07 4.91 4.91 Total: -1.00 -29.29 326.06 -8.22 -37.51 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -4.83 Total: -2.01 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -1.24 Total: -5.60 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.28 Total: -49.48 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.32 Total: -1.06 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.29 -8.22 -37.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360896898.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.371 kcal (2) G-P(sol) polarization free energy of solvation -29.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds