Wall clock time and date at job start Tue Mar 31 2020 00:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47393 * 2 1 4 4 C 1.33635 * 126.03461 * 90.02745 * 3 2 1 5 5 N 1.31784 * 114.49868 * 180.02562 * 4 3 2 6 6 C 1.29022 * 117.12327 * 359.97438 * 5 4 3 7 7 C 1.50708 * 124.91485 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47028 * 89.98005 * 7 6 5 9 9 C 1.46898 * 110.99777 * 190.00415 * 8 7 6 10 10 C 1.50700 * 109.46764 * 169.23302 * 9 8 7 11 11 H 1.08002 * 120.00291 * 354.97417 * 10 9 8 12 12 C 1.37878 * 119.99924 * 174.97180 * 10 9 8 13 13 N 1.31520 * 119.99980 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00369 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46965 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47224 * 120.00048 * 14 12 10 17 17 H 1.48498 * 109.47322 * 240.00309 * 14 12 10 18 18 C 1.46900 * 110.99906 * 66.04470 * 8 7 6 19 19 C 1.52994 * 109.46794 * 62.06232 * 18 8 7 20 20 C 1.47208 * 109.47057 * 179.97438 * 19 18 8 21 21 N 7.17626 * 121.51392 * 298.44881 * 2 1 3 22 22 S 1.70975 * 110.16886 * 359.72954 * 6 5 4 23 23 H 1.09001 * 109.47198 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47144 * 59.99630 * 1 2 3 25 25 H 1.09004 * 109.46661 * 299.99552 * 1 2 3 26 26 H 1.09002 * 109.47144 * 120.00370 * 2 1 3 27 27 H 1.08999 * 109.46855 * 239.99999 * 2 1 3 28 28 H 1.08006 * 122.75286 * 0.02562 * 4 3 2 29 29 H 1.08993 * 109.47118 * 209.98434 * 7 6 5 30 30 H 1.09004 * 109.46581 * 329.97915 * 7 6 5 31 31 H 1.09004 * 109.46937 * 289.22851 * 9 8 7 32 32 H 1.08998 * 109.47703 * 49.22991 * 9 8 7 33 33 H 0.96997 * 120.00225 * 179.97438 * 13 12 10 34 34 H 1.09003 * 109.47097 * 182.06056 * 18 8 7 35 35 H 1.08994 * 109.47296 * 302.05858 * 18 8 7 36 36 H 1.08996 * 109.47274 * 299.93772 * 19 18 8 37 37 H 1.09001 * 109.47325 * 59.94456 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2950 2.1618 1.0807 5 7 2.7248 3.3793 0.8171 6 6 2.8399 3.7064 -0.4257 7 6 3.3127 5.0476 -0.9244 8 7 4.7726 5.0230 -1.0863 9 6 5.2968 6.3714 -1.3410 10 6 6.8002 6.3533 -1.2389 11 1 7.3097 5.4530 -0.9286 12 6 7.5254 7.4863 -1.5415 13 7 6.9051 8.5826 -1.9198 14 14 9.3889 7.4643 -1.4142 15 1 9.8390 6.1202 -0.9712 16 1 9.9794 7.7707 -2.7418 17 1 9.8299 8.4841 -0.4290 18 6 5.1683 4.0939 -2.1532 19 6 4.5777 4.5642 -3.4839 20 6 4.9747 3.6336 -4.5532 21 7 5.2811 2.9144 -5.3791 22 16 2.3848 2.3957 -1.4247 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 2.1655 1.7930 2.0875 29 1 2.8443 5.2640 -1.8845 30 1 3.0399 5.8196 -0.2049 31 1 5.0044 6.6920 -2.3409 32 1 4.8908 7.0643 -0.6040 33 1 7.4152 9.3797 -2.1323 34 1 6.2555 4.0676 -2.2273 35 1 4.7956 3.0960 -1.9227 36 1 3.4905 4.5895 -3.4102 37 1 4.9497 5.5627 -3.7139 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360896898.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:16 Heat of formation + Delta-G solvation = 50.073153 kcal Electronic energy + Delta-G solvation = -19025.684370 eV Core-core repulsion = 16122.138413 eV Total energy + Delta-G solvation = -2903.545958 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.73326 -39.28420 -37.34649 -35.27968 -34.63701 -32.17344 -30.99734 -28.87198 -27.30894 -25.76164 -24.71242 -23.48777 -21.81224 -19.92726 -19.20365 -18.63113 -18.22424 -17.03555 -16.56267 -16.17835 -15.91716 -15.62562 -15.21708 -14.91163 -14.88704 -14.58448 -14.45312 -13.98910 -13.63433 -13.48803 -13.21005 -13.04372 -12.97396 -12.75129 -12.59074 -12.57734 -12.44384 -12.32670 -11.96042 -11.72052 -11.60518 -11.27857 -10.53809 -10.44228 -10.07651 -9.68183 -8.99569 -8.13529 -6.19767 -0.21743 0.43278 0.83131 1.43107 1.46961 1.56939 1.72826 1.77109 1.93191 2.45449 2.95274 3.20044 3.22676 3.50884 3.90714 4.05985 4.07489 4.16350 4.21191 4.37936 4.43395 4.49878 4.63788 4.72381 4.80524 4.83664 5.06030 5.09752 5.17252 5.29290 5.36114 5.36848 5.39243 5.72887 6.10990 6.26215 6.54621 6.59653 6.92252 6.95071 7.48848 8.96162 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.021307 B = 0.004610 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.776610 B = 6072.886089 C = 6809.383766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.045 4.045 3 C -0.216 4.216 4 C 0.017 3.983 5 N -0.490 5.490 6 C 0.050 3.950 7 C 0.120 3.880 8 N -0.530 5.530 9 C 0.201 3.799 10 C -0.516 4.516 11 H 0.057 0.943 12 C 0.014 3.986 13 N -0.926 5.926 14 Si 0.950 3.050 15 H -0.269 1.269 16 H -0.282 1.282 17 H -0.283 1.283 18 C 0.069 3.931 19 C -0.063 4.063 20 C 0.243 3.757 21 N -0.486 5.486 22 S 0.128 5.872 23 H 0.079 0.921 24 H 0.049 0.951 25 H 0.057 0.943 26 H 0.100 0.900 27 H 0.081 0.919 28 H 0.189 0.811 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.007 0.993 32 H 0.010 0.990 33 H 0.263 0.737 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.126 0.874 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.620 -14.105 2.131 19.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.085 4.085 3 C -0.337 4.337 4 C -0.133 4.133 5 N -0.204 5.204 6 C -0.228 4.228 7 C -0.011 4.011 8 N -0.253 5.253 9 C 0.076 3.924 10 C -0.554 4.554 11 H 0.075 0.925 12 C -0.185 4.185 13 N -0.566 5.566 14 Si 0.776 3.224 15 H -0.194 1.194 16 H -0.208 1.208 17 H -0.209 1.209 18 C -0.062 4.062 19 C -0.105 4.105 20 C -0.074 4.074 21 N -0.164 5.164 22 S 0.383 5.617 23 H 0.098 0.902 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.118 0.882 27 H 0.099 0.901 28 H 0.206 0.794 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.025 0.975 32 H 0.028 0.972 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.143 0.857 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.827 -14.887 0.637 19.661 hybrid contribution 0.660 0.897 0.632 1.281 sum -12.167 -13.990 1.268 18.584 Atomic orbital electron populations 1.21784 0.93349 1.03029 1.02094 1.20131 0.96749 0.87143 1.04482 1.26395 1.09484 1.03500 0.94336 1.22009 1.01699 0.88397 1.01221 1.66217 1.15583 1.18874 1.19740 1.26882 1.03103 1.01386 0.91424 1.20732 0.89117 0.90320 1.00919 1.62159 1.08445 1.11474 1.43212 1.19564 0.94218 0.83567 0.95038 1.21428 0.92475 0.97410 1.44124 0.92454 1.25607 1.02377 0.95294 0.95246 1.70026 1.36912 1.02400 1.47298 0.85620 0.81123 0.78091 0.77518 1.19374 1.20799 1.20887 1.22104 1.01620 0.96201 0.86226 1.20145 1.03859 0.96766 0.89708 1.29245 0.91870 0.92956 0.93288 1.81217 1.10697 1.12136 1.12342 1.83805 1.59883 1.06295 1.11722 0.90200 0.93151 0.92426 0.88198 0.90072 0.79391 0.90357 0.88929 0.97541 0.97151 0.92828 0.90660 0.90491 0.85668 0.86611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.89 71.98 0.71 -0.98 16 2 C -0.05 -0.62 6.47 29.85 0.19 -0.43 16 3 C -0.22 -4.51 5.85 24.64 0.14 -4.36 16 4 C 0.02 0.41 11.25 83.66 0.94 1.35 16 5 N -0.49 -15.30 10.54 -191.44 -2.02 -17.32 16 6 C 0.05 1.46 6.18 88.52 0.55 2.01 16 7 C 0.12 3.69 5.34 85.56 0.46 4.15 16 8 N -0.53 -19.73 4.69 -905.38 -4.24 -23.98 16 9 C 0.20 9.17 4.52 85.56 0.39 9.55 16 10 C -0.52 -26.65 8.39 25.60 0.21 -26.44 16 11 H 0.06 3.00 7.36 -2.91 -0.02 2.98 16 12 C 0.01 0.72 5.46 84.65 0.46 1.18 16 13 N -0.93 -51.50 13.29 21.45 0.28 -51.22 16 14 Si 0.95 42.75 29.54 68.60 2.03 44.78 16 15 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 16 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 18 C 0.07 2.25 4.86 86.30 0.42 2.67 16 19 C -0.06 -1.76 5.05 28.79 0.15 -1.62 16 20 C 0.24 7.39 15.44 89.43 1.38 8.77 16 21 N -0.49 -16.70 18.55 20.02 0.37 -16.33 16 22 S 0.13 2.94 21.58 -56.49 -1.22 1.72 16 23 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.19 3.63 8.06 -2.91 -0.02 3.60 16 29 H 0.08 1.97 6.07 -2.39 -0.01 1.96 16 30 H 0.09 3.03 7.92 -2.39 -0.02 3.02 16 31 H 0.01 0.31 6.03 -2.38 -0.01 0.30 16 32 H 0.01 0.52 7.92 -2.39 -0.02 0.50 16 33 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 34 H 0.07 2.82 6.97 -2.39 -0.02 2.80 16 35 H 0.08 2.30 5.90 -2.39 -0.01 2.29 16 36 H 0.13 2.75 6.32 -2.39 -0.02 2.73 16 37 H 0.12 3.62 6.30 -2.39 -0.02 3.60 16 Total: -1.00 -62.64 326.06 2.29 -60.35 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: 1.08 Total: 6.14 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: 6.00 Total: -4.14 kcal Atomic # 7 Polarization: -103.24 SS G_CDS: -5.61 Total: -108.85 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -1.22 Total: 1.72 kcal Total: -62.64 2.29 -60.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360896898.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.425 kcal (2) G-P(sol) polarization free energy of solvation -62.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds