Wall clock time and date at job start Tue Mar 31 2020 01:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47489 * 2 1 4 4 C 1.50704 * 109.46759 * 240.00384 * 2 1 3 5 5 O 1.21277 * 120.00246 * 275.70128 * 4 2 1 6 6 N 1.34779 * 119.99738 * 95.70115 * 4 2 1 7 7 C 1.46501 * 120.00135 * 4.48554 * 6 4 2 8 8 C 1.50703 * 109.46442 * 274.58497 * 7 6 4 9 9 H 1.07997 * 120.00675 * 0.02562 * 8 7 6 10 10 C 1.37882 * 119.99490 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00422 * 0.02562 * 10 8 7 12 12 Si 1.86808 * 119.99656 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47196 * 90.00137 * 12 10 8 14 14 H 1.48504 * 109.46981 * 210.00273 * 12 10 8 15 15 H 1.48498 * 109.47233 * 329.99923 * 12 10 8 16 16 C 1.46504 * 119.99852 * 184.47707 * 6 4 2 17 17 C 1.52995 * 109.46877 * 84.63756 * 16 6 4 18 18 C 1.52997 * 117.50226 * 116.25147 * 17 16 6 19 19 C 1.53002 * 117.49630 * 184.91484 * 17 16 6 20 20 C 1.52996 * 109.47087 * 120.00737 * 2 1 3 21 21 F 1.39905 * 109.46845 * 179.97438 * 20 2 1 22 22 F 1.39892 * 109.47145 * 299.99352 * 20 2 1 23 23 F 1.39902 * 109.47314 * 59.99997 * 20 2 1 24 24 H 1.09001 * 109.47151 * 66.62338 * 1 2 3 25 25 H 1.08992 * 109.47595 * 186.62966 * 1 2 3 26 26 H 1.09002 * 109.47013 * 306.62754 * 1 2 3 27 27 H 1.08992 * 109.47282 * 34.58273 * 7 6 4 28 28 H 1.09004 * 109.47198 * 154.59068 * 7 6 4 29 29 H 0.96999 * 120.00118 * 179.97438 * 11 10 8 30 30 H 1.09001 * 109.47295 * 324.63515 * 16 6 4 31 31 H 1.09003 * 109.46785 * 204.63544 * 16 6 4 32 32 H 1.09002 * 115.55034 * 330.57903 * 17 16 6 33 33 H 1.08998 * 117.50292 * 214.99591 * 18 17 16 34 34 H 1.09004 * 117.49690 * 0.02562 * 18 17 16 35 35 H 1.08993 * 117.49948 * 359.97073 * 19 17 16 36 36 H 1.08998 * 117.49990 * 144.99613 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 8 2.1360 -1.9187 -1.2334 6 7 2.3661 -0.0028 -2.3280 7 6 2.3349 1.4615 -2.2930 8 6 0.9388 1.9414 -2.5960 9 1 0.1533 1.2272 -2.7943 10 6 0.6640 3.2923 -2.6190 11 7 1.6203 4.1621 -2.3770 12 14 -1.0667 3.8872 -2.9938 13 1 -1.8345 4.0051 -1.7283 14 1 -1.0012 5.2135 -3.6585 15 1 -1.7402 2.9158 -3.8927 16 6 2.7605 -0.6979 -3.5558 17 6 1.5099 -1.0777 -4.3510 18 6 1.3269 -0.4375 -5.7285 19 6 1.7045 -1.9167 -5.6156 20 6 2.0400 -0.7214 1.2491 21 9 3.4390 -0.7219 1.2488 22 9 1.5738 -0.0620 2.3914 23 9 1.5736 -2.0404 1.2490 24 1 -0.3633 0.4078 -0.9433 25 1 -0.3634 -1.0207 0.1186 26 1 -0.3633 0.6131 0.8247 27 1 2.6312 1.8077 -1.3030 28 1 3.0249 1.8576 -3.0382 29 1 1.4270 5.1125 -2.3936 30 1 3.3164 -1.6000 -3.3001 31 1 3.3892 -0.0423 -4.1585 32 1 0.6137 -1.2612 -3.7583 33 1 0.3105 -0.1998 -6.0421 34 1 2.0979 0.2540 -6.0684 35 1 2.7236 -2.1976 -5.8813 36 1 0.9364 -2.6521 -5.8549 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361821757.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:52 Heat of formation + Delta-G solvation = -172.685853 kcal Electronic energy + Delta-G solvation = -23404.807365 eV Core-core repulsion = 19474.699490 eV Total energy + Delta-G solvation = -3930.107875 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.70867 -47.24361 -47.10557 -39.50655 -36.97622 -34.86241 -33.30640 -32.58355 -28.02202 -26.54528 -25.90388 -23.32798 -22.44270 -22.00314 -20.44415 -18.89649 -18.16387 -17.93710 -16.85938 -16.63604 -16.33167 -15.66814 -14.81023 -14.43835 -14.37585 -14.08824 -13.95044 -13.61230 -13.50408 -13.34826 -13.28375 -12.90719 -12.66524 -12.51160 -12.16543 -11.93005 -11.71979 -11.46743 -11.28956 -11.18167 -11.01600 -10.98132 -10.65146 -10.34535 -10.00300 -9.78973 -9.48366 -9.20551 -8.63851 -7.90107 -6.27185 -4.34426 2.89986 3.16175 3.18171 3.25060 3.28509 3.65304 4.16906 4.23161 4.25161 4.48623 4.58264 5.03553 5.07562 5.19679 5.31202 5.36828 5.43549 5.52363 5.77159 5.90514 6.00370 6.07334 6.11312 6.15364 6.25805 6.43925 6.51486 6.56366 6.69570 7.03091 7.36813 7.67126 7.93538 8.10168 8.64371 8.79138 9.33321 10.79764 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.013002 B = 0.008397 C = 0.005898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.072422 B = 3333.779978 C = 4746.062809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.155 4.155 3 H 0.144 0.856 4 C 0.525 3.475 5 O -0.553 6.553 6 N -0.585 5.585 7 C 0.233 3.767 8 C -0.534 4.534 9 H 0.065 0.935 10 C 0.068 3.932 11 N -0.889 5.889 12 Si 0.892 3.108 13 H -0.278 1.278 14 H -0.285 1.285 15 H -0.273 1.273 16 C 0.154 3.846 17 C -0.146 4.146 18 C -0.168 4.168 19 C -0.187 4.187 20 C 0.465 3.535 21 F -0.185 7.185 22 F -0.185 7.185 23 F -0.171 7.171 24 H 0.098 0.902 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.036 0.964 28 H 0.041 0.959 29 H 0.266 0.734 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.050 -6.209 0.846 6.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.177 4.177 3 H 0.161 0.839 4 C 0.311 3.689 5 O -0.433 6.433 6 N -0.314 5.314 7 C 0.114 3.886 8 C -0.572 4.572 9 H 0.083 0.917 10 C -0.136 4.136 11 N -0.527 5.527 12 Si 0.720 3.280 13 H -0.204 1.204 14 H -0.211 1.211 15 H -0.197 1.197 16 C 0.031 3.969 17 C -0.166 4.166 18 C -0.205 4.205 19 C -0.225 4.225 20 C 0.410 3.590 21 F -0.166 7.166 22 F -0.166 7.166 23 F -0.152 7.152 24 H 0.117 0.883 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.119 0.881 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.184 -6.623 0.865 6.682 hybrid contribution -0.922 0.637 -0.058 1.123 sum -0.738 -5.986 0.807 6.085 Atomic orbital electron populations 1.21732 0.89314 1.02902 1.05769 1.22604 1.01678 1.03387 0.90056 0.83856 1.19612 0.77847 0.86926 0.84480 1.90692 1.54968 1.13759 1.83876 1.48133 1.63935 1.09580 1.09745 1.19578 0.98250 0.72346 0.98429 1.21417 0.94723 0.91779 1.49295 0.91724 1.24918 0.97285 0.96615 0.94778 1.69908 1.32241 1.02242 1.48349 0.86577 0.84389 0.78329 0.78735 1.20374 1.21106 1.19744 1.20891 0.94224 0.96899 0.84932 1.22593 1.00624 1.03373 0.89981 1.22937 1.02465 0.94625 1.00520 1.22942 1.02087 0.94397 1.03067 1.20212 0.75366 0.78029 0.85366 1.93166 1.30201 1.96476 1.96804 1.93150 1.88559 1.80971 1.53954 1.93195 1.88218 1.37139 1.96680 0.88304 0.91826 0.90853 0.94628 0.94050 0.92417 0.90719 0.90445 0.88060 0.89298 0.88814 0.89174 0.89390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.94 37.16 0.33 -1.99 16 2 C -0.16 -2.82 2.14 -91.77 -0.20 -3.02 16 3 H 0.14 2.66 5.71 -51.93 -0.30 2.37 16 4 C 0.53 10.56 6.32 -10.98 -0.07 10.49 16 5 O -0.55 -12.14 15.02 5.56 0.08 -12.06 16 6 N -0.58 -11.59 2.48 -175.06 -0.43 -12.02 16 7 C 0.23 5.11 4.89 -5.19 -0.03 5.08 16 8 C -0.53 -12.50 8.27 -34.44 -0.28 -12.79 16 9 H 0.06 1.53 6.99 -52.49 -0.37 1.16 16 10 C 0.07 1.66 5.46 -17.82 -0.10 1.56 16 11 N -0.89 -23.09 13.29 55.43 0.74 -22.35 16 12 Si 0.89 19.37 29.54 -169.99 -5.02 14.35 16 13 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 14 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 15 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 16 C 0.15 2.70 5.72 -4.04 -0.02 2.68 16 17 C -0.15 -2.46 5.97 -90.62 -0.54 -3.00 16 18 C -0.17 -2.56 10.18 -26.69 -0.27 -2.83 16 19 C -0.19 -2.58 10.26 -26.69 -0.27 -2.86 16 20 C 0.46 8.21 2.58 37.16 0.10 8.31 16 21 F -0.19 -3.38 17.02 2.25 0.04 -3.34 16 22 F -0.18 -3.03 16.92 2.25 0.04 -2.99 16 23 F -0.17 -3.16 15.28 2.25 0.03 -3.13 16 24 H 0.10 1.77 6.30 -51.93 -0.33 1.45 16 25 H 0.06 1.01 7.62 -51.93 -0.40 0.61 16 26 H 0.07 1.09 7.99 -51.93 -0.41 0.67 16 27 H 0.04 0.81 6.11 -51.93 -0.32 0.49 16 28 H 0.04 0.96 7.80 -51.93 -0.40 0.55 16 29 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 30 H 0.07 1.30 7.53 -51.93 -0.39 0.91 16 31 H 0.08 1.27 7.53 -51.93 -0.39 0.88 16 32 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 33 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.09 1.39 8.03 -51.93 -0.42 0.98 16 35 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 314.08 15.07 4.73 4.73 Total: -1.00 -26.29 314.08 -5.69 -31.98 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -4.55 Total: 3.20 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -1.36 Total: 1.63 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 0.30 Total: -34.37 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.08 Total: -12.06 kcal Atomic # 9 Polarization: -9.57 SS G_CDS: 0.11 Total: -9.46 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -26.29 -5.69 -31.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361821757.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.704 kcal (2) G-P(sol) polarization free energy of solvation -26.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds